Digestive tract

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Unknown (3055)
Transcriptomics (974)
Genomics (523)
Metabolomics (402)
Proteomics (192)
Clinical (43)
Methylation profiling (4)
Other (4)
Models (3)
Genomic (3)
Multiomics (1)

Organisms

Mus musculus (364)
Homo sapiens (304)
Drosophila melanogaster (50)
Rattus norvegicus (33)
Gallus gallus (21)
Bacteroides thetaiotaomicron (17)
Sus scrofa (17)
Escherichia coli (15)
Danio rerio (14)
Caenorhabditis elegans (13)
Candida albicans (9)
mouse gut metagenome (8)
human gut metagenome (7)
Bifidobacterium breve UCC2003 (7)
Macaca mulatta (7)
Bos taurus (7)
gut metagenome (7)
Helicoverpa armigera (5)
Sparus aurata (5)
Yersinia pestis (5)
Rousettus aegyptiacus (4)
Enterococcus faecium (4)
Helicobacter pylori (4)
Anopheles gambiae (4)
Saccharomyces cerevisiae (4)
Bacteria (3)
Mayetiola destructor (3)
Bifidobacterium longum (3)
Bacteroides thetaiotaomicron VPI-5482 (3)
Bacillus cereus (3)

Organisms

Homo sapiens (33)
Mus musculus (28)
gut metagenome (10)
insect gut metagenome (6)
bovine gut metagenome (3)
Candida albicans (3)
Hirudo nipponia (2)
invertebrate gut metagenome (2)
rabbit gut metagenome (2)
sheep gut metagenome (2)
Ovis aries (2)
human metagenome (2)
human gut metagenome (2)
Danio rerio (2)
Bacillus velezensis (2)
Rattus norvegicus (2)
Gallus gallus (2)
Methanorbis rubei (1)
Methanorbis furvi (1)
Methanocorpusculaceae archaeon Sp1 (1)
Methanolapillus africanus (1)
Methanolapillus ohkumae (1)
Methanolapillus millepedarum (1)
Methanimicrococcus hacksteinii (1)
Methanimicrococcus hongohii (1)
Methanimicrococcus stummii (1)
Scytalidium sp. 3C (1)
Aretaon asperrimus (1)
Arbacia dufresnii (1)
Yersinia pestis KIM10+ (1)

Repository

biostudies-arrayexpress (951)
ENA (409)
MetaboLights (401)
MassIVE (125)
geo (78)
EGA (62)
jPOST (22)
pride (18)
iProX (13)
PAXDB (7)
PeptideAtlas (7)
PanoramaPublic (4)
dbGaP (3)
Cell Collective (2)
BioModels (1)
EVA (1)
GNPS (1)

Tissue

Digestive System (1)
Crop (1)
Ruminal fluid (1)
Digestive gland (1)
Gastric juice (1)
Rumen (1)
Hemolymph (1)
Intestine (1)
Pancreas (1)
Salivary gland (1)
Gut (1)
Urine (1)
Feces (1)
Cell culture (1)

Disease

Neoplasms (7)
Colorectal Neoplasms (6)
Carcinoma (4)
Normal (3)
Malignant neoplasm of gallbladder (2)
Colorectal cancer (2)
Inflammatory bowel disease (1)
Portal hypertension (1)
Chronic granulomatous disease (1)
Germ-free (1)
Infected (1)
Colorectal cancer (1)
Colon adenocarcinoma (1)
Unaffected (1)
Leiomyosarcoma (1)
Healthy (1)
Liver Cirrhosis (1)
Parastomal hernia with gangrene (1)
Bowel Cancer screening (1)
Digestive tract tumors, including colorectal cancer, gastric cancer, pancreatic cancer, esophageal adenocarcinoma, esophagogastric junction cancer, etc (1)
Gastroesophageal Reflux (1)
Pancreatic cancer Colon cancer Hepatocellar carcinoma Gastric cancer Bile duct cancer Inflammatory bowel disease (Ulcerative colitis, Crohn) Intraductal papillary mucinous neoplasm Autoimmune disease Hepatic/ digestive tract disorder (1)
Peritoneal Diseases (1)
Centralization of surgical procedures of the gastro-intestinal and hepatobiliary tract:esophageal cancer, gastric cancer, rectal cancer, (primary/secundary) liver cancer and cancer of the biliary tract (1)
Elective colorectal surgery for inflammatory bowel disease, diverticular disease or cancer (1)
Head and Neck Neoplasms (1)
Esophageal Squamous Cell Carcinoma (1)
Colorectal polyps (1)
Congenital digestive tract atresia, gastrointestinal motility disorder, intestinal malrotation, congenital gastrointestinal malformation, Hirschsprung disease, anorectal malformation, neonatal gastrointestinal perforation, pancreaticobiliary maljunction, biliary atresia, portal hypertension, liver fibrosis, congenital airway disease, pulmonary cystic disease, diaphragmatic hernia, vascular or lymphatic malformation, tumor disease, abdominal wall dysplasia, renal urological malformation, malformation syndrome, etc (1)
Pharyngolaryngeal epithelial tumor, epithelial tumor of digestive tract, inflammatory bowel disease (1)

Technology Type

Mass spectrometry (220)
Mass spectrometry assay (164)
NMR spectroscopy (19)
Mass Spectrometry (18)
Shotgun proteomics (12)
Gel-based experiment (2)
Top-down proteomics (2)
Bottom-up proteomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)

Instrument Platform

Illumina NovaSeq 6000 (58)
NextSeq 500 (29)
Illumina HiSeq 2500 (27)
Illumina MiSeq (19)
Illumina HiSeq 4000 (16)
Illumina HiSeq 2000 (12)
Illumina HiSeq 3000 (6)
Single cells were captured using the 10x Genomics Chromium Controller. (5)
NextSeq 550 (5)
10x Genomics Chromium Controller (4)
HiSeq X Ten (4)
Illumina Genome Analyzer IIx (3)
N/A (3)
Illumina HiScanSQ (2)
NextSeq 2000 (2)
TruSeq stranded Total RNA kit (1)
3’ 10X Genomics Chromium (1)
Linux (1)
Zephyr G3 NGS workstation (1)
MiRNeasy Micro kit (1)
Radial JawTM (1)
10x Chromium with a target of 5,000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v2 (1)
10X Genomics reagent kit (1)
MACS (1)
10x Genomics Chromium (1)
Applied Biosciences (1)
GeneTitan Multi-Channel (MC) Instrument (1)
PCR machine; AMPure XP beads; TruSeq Stranded mRNA stranded prep. kit (1)
PCR machine; Superscript II polymerase Kit (Invitrogen); PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep kit.; TruSeq Stranded mRNA stranded prep. kit (1)
Centrifuge 5424R (Eppendorf); miRNeasy Mini Kit (Qiagen); TURBO^TM DNase (Ambion); Bioanalyser (Agilent) (1)

Publication Date

2026 (189)
2025 (154)
2013 (125)
2010 (107)
2014 (105)
2024 (94)
2015 (92)
2011 (89)
2016 (82)
2012 (73)
2022 (71)
2021 (71)
2023 (63)
2020 (55)
2008 (55)
2019 (40)
2009 (36)
2018 (35)
2017 (34)
2007 (22)
2006 (6)
2005 (6)
2004 (2)
2027 (1)

UNIPROT ID/AC

LRC31_HUMAN (5)
PABP3_HUMAN (5)
ST1A2_HUMAN (5)
LIN7B_HUMAN (5)
TPX2_HUMAN (5)
AT12A_HUMAN (5)
JKIP1_HUMAN (5)
PECA1_HUMAN (5)
KAPCG_HUMAN (5)
A0A087WT00_HUMAN (5)
CC146_HUMAN (5)
UB2L3_HUMAN (5)
LC7L2_HUMAN (5)
SGK1_HUMAN (5)
POTEI_HUMAN (5)
SH2B3_HUMAN (5)
GOSR2_HUMAN (5)
NEDD8_HUMAN (5)
KISHA_HUMAN (5)
MBNL2_HUMAN (5)
DHR11_HUMAN (5)
CYFP1_HUMAN (5)
EIF1B_HUMAN (5)
TBB8_HUMAN (5)
SOCS6_HUMAN (5)
CANB1_HUMAN (5)
EPN3_HUMAN (5)
PKHG1_HUMAN (5)
P85B_HUMAN (5)
PRPS3_HUMAN (5)

ENSEMBL ID

ENSG00000229353 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:17368 (48)
CHEBI:16704 (46)
CHEBI:15428 (45)
CHEBI:15891 (45)
CHEBI:17596 (45)
CHEBI:30769 (45)
CHEBI:15741 (44)
CHEBI:16919 (44)
CHEBI:17568 (43)
CHEBI:16359 (43)
CHEBI:32816 (39)
CHEBI:16737 (39)
CHEBI:17821 (37)
CHEBI:30915 (37)
CHEBI:15354 (37)
CHEBI:15940 (36)
CHEBI:16708 (35)
CHEBI:17750 (35)
CHEBI:17687 (35)
CHEBI:6650 (34)
CHEBI:16335 (34)
CHEBI:27266 (34)
CHEBI:16411 (34)
CHEBI:24813 (34)
CHEBI:15971 (34)
CHEBI:18012 (34)
CHEBI:18257 (33)
CHEBI:16750 (33)
CHEBI:25017 (33)
CHEBI:27732 (19)

Metabolite Name

Hypoxanthine (82)
Creatine (80)
Inosine (78)
Uracil (76)
Taurine (74)
Adenosine (70)
Creatinine (70)
Xanthine (69)
Uridine (69)
Adenine (67)
Choline (65)
Riboflavin (64)
Cytidine (64)
Thymine (63)
Azelaic acid (61)
L-Phenylalanine (61)
Guanine (59)
Thymidine (59)
L-Tyrosine (59)
Xanthosine (58)
Citrulline (57)
Betaine (56)
Kynurenic acid (56)
Guanosine (56)
Oleamide (55)
L-Histidine (54)
Cytosine (54)
Deoxycholic acid (53)
Histamine (53)
4-Hydroxybenzaldehyde (52)

First Public Date

2022 (53)
2025 (47)
2024 (40)
2021 (37)
2026 (34)
2019 (34)
2020 (32)
2023 (31)
2014 (28)
2018 (17)
2017 (16)
2016 (16)
2013 (14)
2015 (9)
2011 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Recruiting (19)
Not provided (6)
Active, not recruiting (5)
Not yet recruiting (5)
Completed (5)
Terminated (2)
Enrolling by invitation (1)

Lab affiliation

North Carolina State University (2)
Laboratory of Bacteriology, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, MT 59840, USA. (1)
Proteomic Plateform, Laboratory of Microbiology, Department of Molecular Biology, Université Libre de Bruxelles, Belgium (1)
INRAE-THEIX PFEM composante proteomique UR QuaPA (1)
Instituto de Fisiologia (IHEM-CONICET). Universidad Nacional de Cuyo (1)
Department of Translational Medical Science, University of Naples 'Federico II', Italy (1)
State key Laboratory of Cellular Stress Biology,School of Pharmaceutical Sciences, Xiamen University,China (1)
Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, QLD, Australia (1)
Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (1)
Applied Proteomics Lab, Department of Biology, Maynooth University, Ireland. (1)
Hydrosystems and bioprocesses unit research (HBAN), Environmental Technologies Department, Irstea, France (1)
Manchester Institute of Biotechnology, School of Biological Sciences, Manchester Academic Health Sciences Centre, The University of Manchester, Princess Street, Manchester, M1 7DN, UK (1)
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, 200030, China (lab head) (1)
CR University Grenoble Alpes, Institute for Advanced Biosciences, Inserm U1209, CNRS UMR 5309, Grenoble, France (1)
Department of Biochemistry, University of Oxford (1)
Department of Chemistry University of Nebraska-Lincoln Lincoln, NE 68588 USA (1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (1)

Keyword

Somatuline PR 30mg (1)
ENT cancers (1)
Upper-digestive tract cancers (1)
Phase one (1)
Human epidermal growth factor receptor 2 (1)
Jet injector (1)
Saline solution (1)
Digestive Tract Cancers (1)
Endocrine Tumors (1)
Ovarian/Endometrial Cancer (1)
Genitourinary Cancer (1)
Virtual Reality (1)
VR (1)
Mosapride (1)
Colorectal Cancer Surgery (1)
RET Lung (1)
RET Thyroid (1)
RET fusion (1)
RET alteration (1)
RET mutation (1)
RET positive (1)
RET inhibitor (1)
RET altered (1)
RET rearrangement (1)
RET NSCLC (1)
RET medullary thyroid cancer (1)
RET-rearranged NSCLC (1)
RET-rearranged thyroid (1)
M918T (1)
TRIM33-RET (1)

IsPrivate

False (1)

Classification

bacteria (10)
fungi (3)
helminths (2)
protozoa (1)

Study type

Transcription profiling by array (569)
RNA-seq of coding RNA (150)
Comparative genomic hybridization by array (38)
RNA-seq of coding RNA from single cells (33)
ChIP-seq (21)
DNA-seq (20)
Unknown experiment type (17)
Other (13)
Animal - High-throughput sequencing (12)
RNA-seq of non coding RNA (12)
Methylation profiling by array (10)
RNA-seq of total RNA (7)
High-throughput sequencing (5)
Transcription profiling by tiling array (5)
ChIP-chip by array (4)
Transcription profiling by RT-PCR (4)
Cell line - High-throughput sequencing (3)
Genotyping by array (3)
Baseline (2)
Animal - Single-cell sequencing (2)
Human - Single-cell sequencing (2)
MicroRNA profiling by high throughput sequencing (2)
Spatial transcriptomics by high-throughput sequencing (2)
ATAC-seq (2)
Ribo-seq (2)
Transcription profiling by high throughput sequencing (1)
Transcription profiling by SAGE (1)
Animal - One-color microarray (1)
One-color microarray (1)
Human - High-throughput sequencing (1)

Release Date

2022 (426)
2021 (392)
2023 (382)
2024 (321)
2020 (314)
2025 (313)
2018 (199)
2016 (199)
2019 (189)
2015 (175)
2013 (174)
2017 (159)
2014 (155)
2010 (130)
2011 (118)
2012 (101)
2008 (66)
2009 (56)
2026 (51)
2007 (38)
2005 (15)
2006 (12)
2002 (5)
2004 (4)
1999 (4)
2000 (3)
2003 (2)
1998 (2)
2001 (1)

Location

United States (9)
China (7)
France (7)
United Kingdom (5)
Netherlands (4)
Japan (4)
India (3)
Germany (3)
Italy (3)
Spain (3)
Belgium (2)
Brazil (2)
Canada (2)
Australia (2)
Switzerland (2)
Guam (1)
Iran (1)
Hong Kong (1)
Ireland (1)
Thailand (1)
Taiwan (1)
Lithuania (1)
Singapore (1)
Romania (1)
Portugal (1)
Denmark (1)
Sweden (1)
South Korea (1)

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Relationships between digestive efficiency and metabolomic profiles of serum and intestinal contents in chickens

The increasing cost of conventional feedstuffs has bolstered interest in genetic selection for digestive efficiency (DE), a component of feed efficiency, assessed by apparent metabolisable energy corrected to zero nitrogen retention (AMEn). However, its measurement is time-consuming and constraining...

2018-05-02 | MTBLS560 | MetaboLights

Transcription profiling of mouse jejunum detached peyers patch from mice orally administered lactoperoxidase (LPO) to study influence of bovine LPO on the digestive tract.

Lactoperoxidase (LPO) is a component of milk and other external secretions. Recently, we found antiinflammatory effect of orally administered LPO in mouse model of influenza virus-induced pneumonia. In order to study influence of bovine LPO on the digestive tract as its possible target organ, we per...

ORGANISM(S): Mus musculus

2007-11-13 | E-GEOD-5562 | biostudies-arrayexpress

Bacterial communities of the bovine digestive tract

PRJEB19601 | ENA

Metagenome of Strongylocentrotus intermedius digestive tract

Metagenome of Strongylocentrotus intermedius digestive tract Raw sequence reads

PRJNA1088764 | ENA

Metagenome-assembled genomes in digestive tract of Buffalo

PRJEB43196 | ENA

Transcription profiling of mouse gastro intestinal tract after conventional and germ free treatments

Whole tissues corresponding to the corpus, jejunum, descending colon and rectum were dissected from each mouse, washed with ice-cold PBS, placed into 2ml of RNA-later and flash-frozen in liquid nitrogen. The corpus was defined as the part of the stomach different from the antrum (distinguished by a ...

ORGANISM(S): Mus musculus

2007-09-29 | E-GEOD-1392 | biostudies-arrayexpress

bacterial microbiota of the digestive tract of horses

bacterial microbiota of the digestive tract of horses Metagenome

PRJNA1105226 | ENA

Proteome of Triatoma infestans digestive tract

Triatoma infestans are insect triatomines and vectors of the protozoan Trypanosoma cruzi responsible for human Chagas' disease. Considering that T. cruzi multiplies inside the triatomine digestive tract (TDT), the analysis of the TDT protein profile is an essential step to understand TDT physiology ...

ORGANISM(S): Triatoma Infestans (ncbitaxon:30076)

MSV000086192 | MassIVE

Proteome of Rhodnius prolixus digestive tract

Rhodnius prolixus are insect triatomines and vectors of the protozoan Trypanosoma cruzi responsible for human Chagas' disease. Considering that T. cruzi multiplies inside the triatomine digestive tract (TDT), the analysis of the TDT protein profile is an essential step to understand TDT physiology d...

ORGANISM(S): Rhodnius Prolixus (ncbitaxon:13249)

MSV000086191 | MassIVE

Proteome of Panstrongylus megistus digestive tract

Panstrongylus megistus are insect triatomines and vectors of the protozoan Trypanosoma cruzi responsible for human Chagas' disease. Considering that T. cruzi multiplies inside the triatomine digestive tract (TDT), the analysis of the TDT protein profile is an essential step to understand TDT physiol...

ORGANISM(S): Panstrongylus Megistus (ncbitaxon:65343)

MSV000086190 | MassIVE

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