Dna-affinity purification

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Genomics (721)
Unknown (488)
Transcriptomics (421)
Proteomics (202)
Other (34)
Methylation profiling (12)
Multiomics (1)

Organisms

Homo sapiens (219)
Caenorhabditis elegans (214)
Mus musculus (180)
Saccharomyces cerevisiae (39)
Drosophila melanogaster (35)
Arabidopsis thaliana (35)
Zea mays (10)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (8)
Trypanosoma brucei (8)
Escherichia coli (8)
Bacillus subtilis (5)
Rattus norvegicus (5)
Campylobacter jejuni (4)
Escherichia coli K-12 (4)
Escherichia coli str. K-12 substr. MG1655 (4)
Corynebacterium glutamicum (3)
Bos taurus (3)
Staphylococcus aureus (3)
Brachypodium distachyon (3)
Bacillus subtilis subsp. subtilis str. 168 (2)
Chlorocebus sabaeus (2)
Equus caballus (2)
Schizosaccharomyces pombe (2)
Mesocricetus auratus (2)
Candida albicans (2)
Danio rerio (2)
Tetrahymena thermophila (2)
Streptomyces griseus (1)
Ascaris suum (1)
Lupinus angustifolius (1)

Organisms

Mus musculus (38)
Homo sapiens (31)
Arabidopsis thaliana (20)
Zea mays (7)
Solanum lycopersicum (7)
Drosophila melanogaster (7)
Oryza sativa (7)
Saccharomyces cerevisiae (6)
Pseudomonas fluorescens (5)
Neurospora crassa (4)
Solanum tuberosum (3)
Triticum aestivum (3)
Vitis vinifera (3)
Corynebacterium glutamicum ATCC 13032 (2)
Staphylococcus aureus (2)
Novosphingobium aromaticivorans (2)
Fragaria vesca (2)
Sorghum bicolor (2)
Actinidia chinensis (2)
Gossypium hirsutum (2)
Lotus japonicus (2)
Klebsiella michiganensis M5al (1)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (1)
Citrobacter koseri ATCC BAA-895 (1)
Brucella melitensis M5-90 (1)
Burkholderia sp. JP2-270 (1)
Escherichia coli BW25113 (1)
Providencia stuartii (1)
Pseudomonas aeruginosa PAO1 (1)
Clostridioides difficile (1)

Repository

biostudies-arrayexpress (720)
ENA (342)
pride (160)
geo (127)
MassIVE (27)
iProX (5)
jPOST (5)
EGA (2)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (57)
Epithelial cell (11)
Permanent cell line cell (10)
B cell (7)
Fibroblast (7)
Early embryonic cell (6)
Embryonic stem cell (5)
HeLa cell (4)
Kidney (4)
Embryo (4)
Blood (3)
Hepatocyte (3)
Egg (2)
HEK-293T cell (2)
Bone marrow (2)
Cell suspension culture (2)
T cell (2)
Breast (2)
Brain (2)
Blood plasma (2)
Whole body (2)
Liver (2)
Colonocyte (1)
HEK-293T/17 cell (1)
Sublaminar layer S2 (1)
SCHNEIDER-2 cell (1)
Cervix squamous epithelium (1)
Skeletal muscle cell line (1)
Ovary cancer cell (1)
Cervix epithelium (1)

Disease

Cervix carcinoma (8)
Disease free (7)
Normal (6)
Breast cancer (6)
Lymphoma (4)
Osteosarcoma (3)
Acute leukemia (2)
Colon cancer (2)
Endometrial adenocarcinoma (1)
Hepatitis B (1)
Mitochondrial metabolism disease (1)
Tularemia (1)
Head and neck squamous cell carcinoma (1)
Chronic lymphocytic leukemia (1)
Burkitt lymphoma (1)
Liver cancer (1)
Facioscapulohumeral muscular dystrophy (1)
Malignant neoplasm of ovary (1)
COVID-19 (1)
Alzheimer's disease (1)
Leishmaniasis (1)
Cystic fibrosis (1)
Brain cancer (1)
Neuroblastoma (1)
Mixed disorder as reaction to stress (1)

Technology Type

Mass Spectrometry (160)
Affinity purification coupled with mass spectrometry proteomics (117)
Shotgun proteomics (48)
Bottom-up proteomics (20)
Data-dependent acquisition (15)
Gel-based experiment (10)
Top-down proteomics (5)
Data-independent acquisition (4)
DiaPASEF (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SWATH MS (3)
Affinity proteomics (2)
Illumina Genome Analyzer II (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (16)
NextSeq 500 (15)
Illumina HiSeq 2500 (13)
Illumina HiSeq 2000 (13)
LTQ Orbitrap Velos (5)
Illumina Genome Analyzer II (4)
NextSeq 550 (4)
Illumina HiSeq 4000 (4)
LTQ (4)
LTQ Orbitrap Elite (4)
Illumina NovaSeq X (3)
TripleTOF 5600 (3)
Q Exactive (3)
Illumina Genome Analyzer IIx (2)
Affymetrix (2)
NextSeq 2000 (2)
Illumina MiSeq (2)
TripleTOF 6600 (2)
-- (1)
Cutadapt, STAR (1)
TruSeq Stranded mRNA Sample Prep Kit (Illumina) (1)
BD InFlux Cytometer (Becton-Dickinson) (1)
In Silico Molecular Cloning Program (1)
Unspecified (1)
GenePix Professional 4200A [Axon Instruments] (1)
Flow Cytometer (1)
NA (1)
Illumina HiSeq X (1)
Illumina HiSeq 1000 (1)
Illumina HiSeq 1500 (1)

Publication Date

2013 (204)
2014 (91)
2015 (88)
2012 (88)
2011 (79)
2022 (50)
2016 (50)
2024 (46)
2023 (45)
2021 (45)
2025 (44)
2010 (42)
2020 (30)
2026 (24)
2017 (23)
2019 (21)
2018 (19)
2009 (19)
2008 (17)
2006 (7)
2007 (5)
2005 (3)

UNIPROT ID/AC

IGSF2_MOUSE (1)
TMM52_MOUSE (1)
MCIN_MOUSE (1)
ELF5_MOUSE (1)
IL12A_MOUSE (1)
CXA10_MOUSE (1)
E9Q6B9_MOUSE (1)
MRGB2_MOUSE (1)
TSCOT_MOUSE (1)
LRRC9_MOUSE (1)
A2CF17_MOUSE (1)
PRDM5_MOUSE (1)
SPB11_MOUSE (1)
10090.ENSMUSP00000137545 (1)
GDPD3_MOUSE (1)
CCNQ_MOUSE (1)
PATE2_MOUSE (1)
OL473_MOUSE (1)
M4A6C_MOUSE (1)
SLNL1_MOUSE (1)
E9PWJ8_MOUSE (1)
GP174_MOUSE (1)
S13A2_MOUSE (1)
ZN664_MOUSE (1)
SATL1_MOUSE (1)
S26A5_MOUSE (1)
Q99N04_MOUSE (1)
PTHD3_MOUSE (1)
TR135_MOUSE (1)
SOCS3_MOUSE (1)

First Public Date

2022 (76)
2026 (53)
2025 (41)
2024 (38)
2014 (27)
2023 (24)
2021 (22)
2020 (12)
2013 (11)
2018 (8)
2017 (8)
2015 (8)
2016 (7)
2019 (6)
2012 (1)

Classification

bacteria (20)
fungi (2)

Modification

15.994915 (1)
57.021464 (1)

Study type

ChIP-seq (315)
RNA-seq of coding RNA (123)
Transcription profiling by array (118)
Other (41)
ChIP-chip by array (24)
Methylation profiling by high throughput sequencing (20)
ChIP-chip by tiling array (17)
Methylation profiling by array (11)
RNA-seq of non coding RNA (9)
Ribo-seq (8)
Unknown experiment type (5)
Comparative genomic hybridization by array (5)
RNA-seq of coding RNA from single cells (5)
Translation profiling (3)
Proteomic profiling by array (3)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA from single cells (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
Bisulfite-seq (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)

Release Date

2013 (212)
2015 (113)
2014 (108)
2012 (105)
2011 (95)
2016 (67)
2025 (55)
2023 (49)
2021 (48)
2010 (48)
2024 (41)
2022 (40)
2018 (33)
2020 (32)
2009 (32)
2017 (29)
2008 (25)
2019 (24)
2026 (13)
2006 (11)
2007 (9)
2005 (7)
2004 (3)
1999 (3)
2003 (2)
1998 (2)
2001 (1)
2000 (1)

Lab affiliation

Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg Germany (4)
Medical bioanalytics Institute for ophthalmic research Eberhard-Karls-University Tuebingen (3)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands. (3)
Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany. (3)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Centre for Genomic Regulation (2)
Dept. of Molecular Biosciences, University of Texas at Austin, Texas 78712 USA (2)
Wellcome Trust Sanger Institute (2)
Institute of Human Genetics (IGH), Centre National de la Recherche Scientifique (CNRS), Montpellier, France (1)
Centre de recherche du CHU de Québec - Université Laval (1)
Department of Molecular Microbiology & Immunology Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Leiden University Medical Center (LUMC) Einthovenweg 20 2333 ZC Leiden (1)
Department of Molecular Biology Radboud Institute for Molecular Life Sciences Radboud University Nijmegen 6500 HB the Netherlands (1)
Department of Genetics, Stanford School of Medicine, USA (1)
Department of Molecular, Cellular, and Developmental Biology (MCDB) at University of California Santa Barbara (UCSB) (1)
Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA (1)
Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
Max Planck Institute for Biophysics Max Planck Institute of Brain Research (1)
Institute of Functional Epigenetics, Helmholtz Zentrum München, Germany (1)
Department of Microbiology and Immunology, Department of Biochemistry and Biophysics, and Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill (1)
Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald-Insel Riem,Germany (1)
Department of Cellular and Molecular Pharmacology Quantitative Biosciences Institute University of California San Francisco San Francisco, CA 94158, USA (1)
Professor of Biochemistry, Faculty of Biology, Medicine & Health, Wellcome Trust Centre for Cell-Matrix Research, University of Manchester, United Kingdom (lab head) (1)
Department of Bacterial Molecular Genetics University of Gdansk (1)
Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520 Turku, Finland Institute of Biomedicine, University of Turku, 20520 Turku, Finland (1)
Department of Chemical and Biological Engineering, University of Sheffield (1)
Institute of Epigenetics and Stem Cells, Helmholtz ZentrumMünchen, Feodor-Lynen- Strasse 21, 81377 München, Germany (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI)Beutenbergstr. 11 07745 Jena Germany Tel.: +49 3641 656876 (1)
Genetics, Cell Biology and Anatomy; University of Nebraska Medical Center; USA (1)
Hainan University (1)

1878 Results

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