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TranscriptomicsIdentifying crossover locations in Arabidopsis thaliana asy1/+ Col × Ler F2 populations using genotyping-by-sequencing
Genomic DNA from 191 asy1/+ Col x Ler F2 individuals was extracted using CTAB and used to generate sequencing libraries as described (Lawrence et al, 2019 Current Biology). Sequencing data was analysed to identify crossovers using the TIGER pipeline as previously described (Rowan et al, 2015 G3 (Bet...
ORGANISM(S): Arabidopsis thaliana 
2020-05-18 | E-MTAB-8725 | biostudies-arrayexpress
MetabolomicsMetabolic Profiling of Volatile Organic Compounds (VOCs) Emitted by the Pathogens Francisella tularensis and Bacillus anthracis in Liquid Culture
We conducted comprehensive (untargeted) metabolic profiling of volatile organic compounds (VOCs) emitted in culture by bacterial taxa Francisella tularensis (F. tularensis) subspecies novicida and Bacillus anthracis (B. anthracis) Sterne, surrogates for potential bacterial bioterrorism agents, as we...
2020-08-20 | MTBLS1737 | MetaboLights
GenomicsIdentification of the primary target of the chemotherapeutic agent CX-5461 as a late step in transcription initiation by RNA Polymerase I
In recent years, several small molecule cytotoxic drugs have been identified as potential inhibitors of ribosome biogenesis (Drygin et al., 2011; Peltonen et al., 2014a; Peltonen et al., 2014b). CX-5461 is one such drug that has also demonstrated anticancer potential for a wide range of malignancies...
ORGANISM(S): Mus musculus 
2021-04-07 | E-MTAB-9242 | biostudies-arrayexpress
MetabolomicsLinking soil biology and chemistry in biological soil crust using isolate exometabolomics
Metagenomic sequencing provides a window into microbial community structure and metabolic potential; however, linking these data to exogenous metabolites that microorganisms process and produce (the exometabolome) remains challenging. Previously, we observed strong exometabolite niche partitioning a...
2018-07-31 | MTBLS492 | MetaboLights
Other,MultiomicsChevrette et al 2019 Insect-associated Streptomyces
Paper title: The antimicrobial potential of Streptomyces from insect microbiomes. Author list: Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J, Carlos C, Flanigan W, Grubbs KJ, Horn HA, Hoffmann FM, Klassen JL, Knack JJ, Lewin GR, McDonald BR, Muller L, Melo ...
ORGANISM(S): Pseudonocardia Kitasatospora Streptomyces Gordonia <actinomycete> 
2019-12-18 | MSV000084723 | MassIVE
ProteomicsComprehensive peptide quantification for data independent acquisition mass spectrometry using chromatogram libraries
Raw DDA and DIA data to support Searle et al. 2018. Comprehensive peptide quantification for data independent acquisition mass spectrometry using chromatogram libraries. bioRxiv doi:10.1101/277822
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Saccharomyces Cerevisiae (ncbitaxon:4932) 
2018-08-08 | MSV000082805 | MassIVE
TranscriptomicsChIP-seq for Hoxa2 on mouse posterior branchial arches at E11.5
Hoxa2 ChIP-seq on mouse posterior branchial arches connected to outflow tract of the heart (PBA/OFT) at embryonic day (E) 11.5.
ORGANISM(S): Mus musculus 
2020-10-16 | E-MTAB-8606 | biostudies-arrayexpress
UnknownCorrection: CO2 induced phase transitions in diamine-appended metal-organic frameworks.
Not available
S-EPMC6979493 | biostudies-literature
TranscriptomicsChIP-seq for Hoxa2 on mouse second branchial arches at E11.5.
Hoxa2 ChIP-seq on mouse second branchial arch (BA2) at embryonic day (E) 11.5.
ORGANISM(S): Mus musculus 
2020-01-06 | E-MTAB-7766 | biostudies-arrayexpress
GenomicsChIP-seq for Hoxa3 on mouse posterior branchial arches at E11.5.
Hoxa3 ChIP-seq on mouse posterior branchial arches connected to outflow tract of the heart (PBA/OFT) at embryonic day (E) 11.5.
ORGANISM(S): Mus musculus 
2020-10-16 | E-MTAB-8607 | biostudies-arrayexpress
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