Dps - OmicsDI

Show results for

Unknown (761)
Genomics (264)
Transcriptomics (113)
Proteomics (18)
Metabolomics (3)
Other (2)
Models (1)

Organisms

Mus musculus (45)
Homo sapiens (40)
Drosophila melanogaster (12)
Bombyx mori (9)
Caenorhabditis elegans (8)
Arabidopsis thaliana (5)
Escherichia coli (5)
Bifidobacterium breve UCC2003 (3)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (3)
soil metagenome (2)
Bacillus cereus (2)
Oryza sativa (2)
Deinococcus geothermalis DSM 11300 (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Pediococcus acidilactici (1)
Leishmania braziliensis (1)
Brassica napus (1)
Drosophila virilis (1)
Staphylococcus aureus subsp. aureus USA300 (1)
Mus musculus domesticus (1)
Cricetulus griseus (1)
Saccharomyces cerevisiae (1)
Rattus norvegicus (1)
Escherichia coli str. K-12 substr. W3110 (1)
Pyrococcus furiosus (1)
Deinococcus radiodurans (1)
Saccharolobus islandicus (1)
Bacillus cereus ATCC 14579 (1)
Escherichia coli K-12 (1)
Magallana gigas (1)

Organisms

Mus musculus (13)
Homo sapiens (8)
Variovorax atrisoli (4)
Rhodococcoides fascians (3)
Escherichia coli (3)
Pedobacter africanus (2)
Curtobacterium oceanosedimentum (2)
Sphingomonas trueperi (2)
Paenarthrobacter nitroguajacolicus (2)
Mucilaginibacter rubeus (2)
Paraburkholderia caledonica (2)
Stenotrophomonas rhizophila (2)
Janthinobacterium lividum (2)
Deinococcus geothermalis DSM 11300 (2)
Bifidobacterium breve UCC2003 (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Aeromonas salmonicida (2)
Pseudomonas fluorescens (2)
Priestia aryabhattai (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (2)
Variovorax sp. 2002 (1)
Curtobacterium sp. 1909 (1)
Variovorax sp. 1763 (1)
Flavobacterium sp. 1750 (1)
Microbacterium sp. 1676 (1)
Variovorax sp. 1615 (1)
Herbaspirillum sp. 1589 (1)
Microbacterium sp. 1518 (1)
Curtobacterium sp. 1517 (1)
Duganella sp. 1411 (1)

Repository

ENA (236)
biostudies-arrayexpress (108)
geo (33)
pride (9)
iProX (4)
MassIVE (4)
MetaboLights (2)
BioModels (1)
EGA (1)
GNPS (1)
GPMDB (1)
jPOST (1)

Tissue

Whole body (1)
Leaf (1)

Disease

Alzheimer's disease (1)
N/A (culture-derived) (1)
Not Available (1)

Technology Type

Mass Spectrometry (9)
Shotgun proteomics (6)
Mass spectrometry (2)
SWATH MS (1)
SRM/MRM (1)
Data-dependent acquisition (1)
Top-down proteomics (1)
Bottom-up proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
Illumina HiSeq 2500 (3)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
Impact HD (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina MiniSeq (1)
NextSeq 2000 (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
Instrument (1)
LTQ Orbitrap Elite (1)
Q Exactive HF (1)
QTRAP 6500+ (1)

Publication Date

2014 (17)
2016 (15)
2012 (15)
2015 (12)
2009 (12)
2020 (10)
2010 (10)
2011 (9)
2024 (8)
2025 (8)
2023 (7)
2021 (5)
2013 (5)
2022 (5)
2026 (4)
2019 (4)
2018 (3)
2017 (3)
2008 (3)
2007 (3)
2006 (3)

UNIPROT ID/AC

O25420 (1)
Q48271 (1)
O25044 (1)
O25333 (1)
O25332 (1)
O25786 (1)
O25071 (1)
O25342 (1)
O26078 (1)
O26085 (1)
O26018 (1)
O25376 (1)
O25488 (1)
Q48262 (1)
O25014 (1)
O26011 (1)
O25838 (1)
O25551 (1)
O25150 (1)
O25011 (1)
O26077 (1)
O25505 (1)
P56003 (1)
O25122 (1)
O25124 (1)
P56117 (1)
P56176 (1)
O25872 (1)
O26103 (1)
O26102 (1)

Metabolite Name

Homomethionine (2)
Melezitose (2)
N-Methylisoleucine (2)
N6,N6,N6-Trimethyl-L-lysine (2)
Dihydrojasmonic acid (2)
N-Acetyl-beta-alanine (2)
Uracil (2)
L-Aspartyl-L-Phenylalanine (2)
N6-Acetyl-L-lysine (2)
5'-Methylthioadenosine (2)
5-Hydroxymethyluracil (2)
N-Carbamoylsarcosine (2)
L-Ornithine (2)
Tributyl citrate (2)
N-Acetyl-L-tyrosine (2)
Traumatin (2)
Sebacic acid (2)
Sphinganine (2)
Stachyose (2)
Creatine (2)
Alpha-Aminobutyric acid (1)
20-Hydroxypregn-4-en-3-one (1)
SM(d16:2(4E,8Z)/TXB2) (1)
1-amino-3-(4-tert-butylphenoxy)propan-2-ol (1)
Bis(Hydroxyethyl) terephthalate (1)
Ser Pro Glu (1)
Glycyl-D-proline (1)
1h-Benzotriazole (1)
P-Hydroxyphenylacetic acid (1)
Ile Asp Asp (1)

IsPrivate

False (1)

First Public Date

2021 (107)
2024 (78)
2014 (12)
2025 (10)
2020 (8)
2026 (6)
2023 (3)
2022 (2)
2019 (2)
2018 (2)
2017 (2)
2016 (2)
2015 (2)

Classification

bacteria (30)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (48)
ChIP-seq (21)
RNA-seq of coding RNA (11)
Methylation profiling by array (10)
ChIP-chip by tiling array (2)
ChIP-chip by array (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Other (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (89)
2023 (87)
2025 (85)
2024 (79)
2020 (76)
2021 (73)
2019 (60)
2018 (49)
2016 (35)
2017 (33)
2014 (31)
2015 (28)
2012 (28)
2013 (17)
2011 (16)
2010 (15)
2009 (15)
2026 (10)
2006 (10)
2008 (9)
2004 (6)
2007 (4)
2003 (3)
2000 (3)
2005 (2)
2002 (2)
1999 (2)
2001 (1)
1998 (1)

Lab affiliation

Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg, CNRS, IPHC, UMR 7178, 25 Rue Becquerel, F-67087 Strasbourg, France (2)
TUBITAK UME, National Metrology Institute of TURKEY (1)
Institute for Molecular Bioscience - University of Queensland (1)
Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, 3012 Bern, Switzerland (1)
State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry (1)
Department of Biochemistry and Molecular Biology, Brody School of Medicine at East Carolina University, NC, USA (1)
Beijing Proteome Research Center (1)
College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University (1)

Previous page
1 / 117
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 117
Next page

Sort by:

Relevance

Page size

RNA-Seq analysis among dps-disrupted mutants in Deinococcus geothermalis

Transcriptomic analysis was performed in Deinococcus geothermalis wild-type and three mutants including dgeo_0257, dgeo_0281, and double knockout (DK) mutants. dgeo_0281 is a major Dps-coding gene and dgeo_0257 is a novel Dps candidate. Thus, to detecte physiological functions of both Dps-encoded ge...

ORGANISM(S): Deinococcus geothermalis DSM 11300

2025-04-30 | GSE284126 | GEO

exoRNA-mediated Cell-to-cell Communications in E. coli are Supported by Dps Mobility

Being a ferroxidase and a structural factor of the Escherichia coli nucleoid, Dps protein was recently encountered in the outer membrane and attracted attention as a potential partner for bacterial RNAs. Here, we show the first images visualizing Dps on the surface of bacteria and demonstrate that D...

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2023-08-30 | GSE221667 | GEO

The Nucleoid Protein Dps Binds Genomic DNA of Escherichia coli in a Non-random Manner

Dps is a multifunctional homododecameric protein that oxidizes Fe2+ ions accumulating them in the form of Fe2O3 within its protein cavity, interacts with DNA tightly condensing bacterial nucleoid upon starvation and performs some other functions. Ferroxidase activity of Dps is rather well studied, b...

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2017-08-10 | GSE102091 | GEO

Dps binds and protects DNA in starved Escherichia coli with minimal effect on chromosome accessibility, dynamics and organization

Dps is the most abundant nucleoid-associated protein in starved Escherichia coli with ∼180000 copies per cell. Dps binds DNA and oxidizes iron, facilitating survival in harsh environments. Dps–DNA complexes can form crystalline structures, leading to the proposed model that Dps reorganizes the starv...

ORGANISM(S): Escherichia coli str. K-12 substr. W3110

2026-01-06 | GSE293552 | GEO

RNA-Seq analysis among dps-disrupted mutants in Deinococcus geothermalis

PRJNA1197403 | ENA

exoRNA-mediated Cell-to-cell Communications in E. coli are Supported by Dps Mobility

PRJNA915474 | ENA

Characterization of the DNA-Mediated Oxidation of Dps, A Bacterial Ferritin.

Not available

S-EPMC5014645 | biostudies-literature

Single-Cell Analysis of the Dps Response to Oxidative Stress.

Not available

S-EPMC4959295 | biostudies-literature