Duke M M - OmicsDI

Show results for

Unknown (14187)
Proteomics (165)
Transcriptomics (131)
Genomics (81)
Models (13)
Genomic (6)
Metabolomics (6)

Organisms

Homo sapiens (156)
Mus musculus (53)
Saccharomyces cerevisiae (14)
Escherichia coli (8)
Rattus norvegicus (7)
Caenorhabditis elegans (6)
Bos taurus (6)
Drosophila melanogaster (5)
Arabidopsis thaliana (4)
Danio rerio (3)
Olavius algarvensis (3)
Olavius algarvensis Delta 1 endosymbiont (3)
Olavius algarvensis Delta 4 endosymbiont (3)
Olavius algarvensis Gamma 1 endosymbiont (3)
Olavius algarvensis spirochete endosymbiont (3)
Olavius algarvensis sulfate-reducing endosymbiont (3)
Mammalia (2)
Mycobacterium tuberculosis (2)
cellular organisms (1)
Cryptococcus gattii (1)
Strongylocentrotus purpuratus (1)
Musca domestica (1)
Taeniopygia guttata (1)
Brassica napus (1)
Rattus rattus (1)
Cryptococcus neoformans (1)
Gallus gallus (1)
Eremophila rugosa (1)
108887 (1)
Lycium barbarum (1)

Organisms

Homo sapiens (11)
Mus musculus (9)
Danio rerio (3)
Halobacterium salinarum NRC-1 (2)
Microcebus (1)
Mucor lusitanicus (1)
Malassezia sympodialis (1)
Microcebus murinus (1)
Erythranthe laciniata (1)
Musa acuminata (1)
Mycobacterium tuberculosis H37Rv (1)
marine metagenome (1)
Arabidopsis thaliana (1)
Escherichia coli (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (157)
pride (110)
ENA (46)
MassIVE (42)
BioModels (13)
EGA (9)
jPOST (9)
dbGaP (6)
MetaboLights (4)
GNPS (2)
iProX (2)
PanoramaPublic (2)

Tissue

Cell culture (23)
Brain (10)
Epithelial cell (7)
Liver (4)
Permanent cell line cell (4)
Blood plasma (3)
Blood serum (3)
Cell suspension culture (3)
Colon (3)
Heart (3)
Cerebrospinal fluid (2)
Cotyledon (2)
Fibroblast (2)
HeLa cell (2)
Hepatocyte (2)
Skeletal muscle (2)
Skin (2)
Anterior chamber of the eye (1)
Blood (1)
Blood cell (1)
Bone marrow (1)
Choroid (1)
Choroidal cell of the eye (1)
Dendritic cell (1)
Early embryonic cell (1)
Egg (1)
Electrically active cell (1)
Embryo (1)
Exoskeleton (1)
Eye trabecular meshwork (1)

Disease

Breast cancer (7)
Disease free (3)
Human immunodeficiency virus infectious disease (2)
Alzheimer's disease (2)
Cardiovascular system disease (2)
Parkinson's disease (2)
Prostate carcinoma (2)
Non-small cell lung carcinoma (2)
Prostate adenocarcinoma (2)
Autistic disorder (1)
Bacterial infectious disease (1)
Cancer (1)
Down syndrome (1)
Multiple sclerosis (1)
Metastatic prostate cancer (1)
Healthy (1)
Cervix carcinoma (1)
Colon cancer (1)
Degeneration of macula and posterior pole (1)
Malignant neoplasm of ovary (1)
Obesity (1)
Ocular hypertension (1)
Pigment dispersion syndrome (1)
Progeria (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (110)
Shotgun proteomics (56)
Bottom-up proteomics (36)
Affinity purification coupled with mass spectrometry proteomics (10)
Data-dependent acquisition (10)
Gel-based experiment (5)
Data-independent acquisition (4)
Mass spectrometry (2)
Mass spectrometry assay (2)
Top-down proteomics (2)
Affinity proteomics (1)
HDMSE (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Orbitrap Fusion Lumos (23)
Orbitrap Exploris 480 (7)
Orbitrap Astral (6)
Q Exactive (5)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
NextSeq 500 (2)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
MouseWG-6_V2_0_R3_11278593_A (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
MicrOTOF II (1)
Orbitrap Fusion ETD (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Thermo Exploris 480 (1)
TimsTOF Pro 2 (1)
TripleTOF 6600 (1)
Xevo TQ-XS (1)
Gas Chromatography MS - - - Liquid Chromatography MS - - - Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2024 (30)
2025 (28)
2010 (27)
2026 (25)
2012 (23)
2021 (20)
2015 (18)
2023 (18)
2011 (17)
2022 (17)
2014 (16)
2019 (15)
2016 (14)
2008 (13)
2020 (13)
2013 (12)
2017 (8)
2018 (7)
2005 (7)
2009 (5)
2007 (3)
2006 (1)

UNIPROT ID/AC

O96020 (1)
P00451 (1)
P00734 (1)
P00740 (1)
P00742 (1)
P01008 (1)
P01106 (1)
P06400 (1)
P07490 (1)
P08709 (1)
P0A7L0 (1)
P0AG67 (1)
P10646 (1)
P12259 (1)
P13726 (1)
P24864 (1)
P30969 (1)
P51924 (1)
Q01094 (1)

CHEBI ID

CHEBI:15428 (4)
CHEBI:16811 (4)
CHEBI:17822 (4)
CHEBI:17230 (3)
CHEBI:17858 (3)
CHEBI:18237 (3)
CHEBI:15633 (2)
CHEBI:15635 (2)
CHEBI:15637 (2)
CHEBI:15641 (2)
CHEBI:16474 (2)
CHEBI:17622 (2)
CHEBI:18406 (2)
CHEBI:1989 (2)
CHEBI:15356 (1)
CHEBI:15414 (1)
CHEBI:15611 (1)
CHEBI:15638 (1)
CHEBI:15740 (1)
CHEBI:16240 (1)
CHEBI:16526 (1)
CHEBI:16595 (1)
CHEBI:16680 (1)
CHEBI:16842 (1)
CHEBI:16856 (1)
CHEBI:17515 (1)
CHEBI:17724 (1)
CHEBI:17750 (1)
CHEBI:17755 (1)
CHEBI:18272 (1)

Metabolite Name

GAR (2)
Uracil (2)
1-Naphthaleneacetic acid (1)
1-methyladenosine (1)
1-methylnicotinamide (1)
12-Methyltridecanoic acid (1)
16-Methylheptadecanoic acid (1)
2,3-BPG (1)
2-Hydroxybutyric acid (AHB) (1)
2-Hydroxystearic acid (1)
2-Indolecarboxylic acid (1)
2-Ketobutyric acid (1)
2-aminoadipate (1)
2-hydroxyglutarate (1)
2-oxoadipate (1)
3-hydroxybutyrate (1)
3-hydroxyisobutyric acid (1)
3-methylglutarylcarnitine (1)
3-phosphoglycerate (1)
3-ureidopropionate (1)
4-Guanidinobutanoic acid (1)
4-Hydroxybutyric acid (1)
4-Methylcatechol (1)
5-Hydroxyindole-3-Acetate (1)
6-phosphogluconate (1)
7-methylguanosine (1)
ADP (1)
ADP-ribose (1)
AICAR (1)
AMP (1)

First Public Date

2014 (10)
2022 (8)
2024 (4)
2013 (4)
2026 (3)
2017 (3)
2025 (2)
2023 (2)
2021 (2)
2020 (2)
2019 (2)
2018 (2)
2016 (1)
2012 (1)

Modelling Approach

Ordinary differential equation model (11)

Lab affiliation

North Carolina State University (6)
Duke University (5)
Assistant Professor Department of Medicine, Division of Endocrinology, Metabolism, and Nutrition Department of Pharmacology and Cancer Biology Duke University Medical Center (3)
Duke University Eye Center (3)
Cardiovascular and Metabolic Diseases, Duke-NUS Medical School, Singapore (2)
Chemistry, Duke University, USA (2)
Department of Pathology and Duke Cancer Institute, Duke University School of Medicine, Durham, NC 27710, USA (2)
Duke Proteomics and Metabolomics Shared Resource (2)
Professor of Pharmacology, Duke University (2)
Professor, Chemistry, Duke University (2)
1 Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. 2 Department of Pharmacology and Cancer Biology, Duke University School of Medicine, Durham, NC 27710, USA 3 Duke Cancer Institute, Duke University School of Medicine, Durham, NC 27710, USA 4 Department of Pathology, Duke University School of Medicine, Durham, NC 27710, USA (1)
Arts and Sciences Distinguished Professor of Biology Duke University (1)
Assistant Professor of Biochemistry Assistant Professor in Neurobiology Nanaline Duke Room 155 Box 3711, DUMC Durham, NC 27710 (1)
Assistant Professor of Biochemistry Assistant Professor of Neurobiology Nanaline Duke Room 155 Box 3711, DUMC Durham, NC 27710 (1)
Assistant Professor of Medicine (Hematology) Senior Fellow, Duke Aging Center Duke Molecular Physiology Institute Duke University School of Medicine (1)
Associate Professor Department of Biochemistry Duke University Medical Center (1)
Associate Professor Department of Biochemistry Duke University School of Medicine (1)
Associate Professor Department of Pharmaceutical Sciences College of Pharmacy The University of Oklahoma Health Sciences Center (1)
Associate Professor of Biochemistry Associate Professor of Cell Biology Duke University School of Medicine (1)
Associate Professor of Oncological Sciences Huntsman Cancer Institute at the University of Utah (1)
Associate Professor, Department of Medicine, Division of Endocrinology, Metabolism, and Nutrition, Department of Pharmacology and Cancer Biology Duke University Medical Center (1)
Cardiovascular & Metabolic Disorders, Duke-NUS Medical School, Singapore (1)
Center for Genomics and Systems Biology Department of Biology New York University, New York, NY, 10003, USA (1)
Center for Genomics and Systems Biology Department of Biology New York University, USA (1)
Chair, Department of Molecular Genetics and Microbiology James B. Duke Distinguished Professor of Molecular Genetics and Microbiology Duke University School of Medicine (1)
Chemistry department, Duke university (1)
Chemistry, Duke University (1)
Chemistry, Fitzgerald lab, Duke University, USA (1)
Chemistry, Fitzgerald, Duke University, USA (1)
Chemistry, Fitzgerald, Duke university, USA (1)