Duncan M M - OmicsDI

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Unknown (2680)
Transcriptomics (130)
Models (67)
Proteomics (65)
Genomics (28)
Metabolomics (22)
Multiomics (3)

Organisms

Homo sapiens (145)
Mus musculus (64)
Schizosaccharomyces pombe (13)
Arabidopsis thaliana (6)
Saccharomyces cerevisiae (3)
Mycobacterium tuberculosis (3)
Vesicular stomatitis Indiana virus (2)
Leishmania donovani (2)
Schmidtea mediterranea (2)
Rattus norvegicus (2)
Bacteria (2)
Ovis aries (2)
Gallus gallus (2)
Babesia microti (1)
Zaire ebolavirus (1)
Tai Forest ebolavirus (1)
Apodemus sylvaticus (1)
Citrus limonia (1)
Paramecium bursaria Chlorella virus 1 (1)
Clostridium perfringens (1)
Salmonella enterica (1)
Tetraodon nigroviridis (1)
Anolis carolinensis (1)
Xenopus tropicalis (1)
mouse gut metagenome (1)
Zea mays (1)
Staphylococcus aureus (1)
Canis lupus familiaris (1)
Drosophila melanogaster (1)
Danio rerio (1)

Organisms

Mus musculus (2)
Severe acute respiratory syndrome coronavirus 2 (1)

Repository

biostudies-arrayexpress (146)
BioModels (67)
pride (59)
MetaboLights (18)
EGA (8)
MassIVE (6)
GNPS (4)
ENA (3)
geo (2)

Tissue

Cell culture (10)
Kidney cell (6)
Liver (5)
Epithelial cell (4)
Leaf (3)
Plant cell (3)
Blood plasma (2)
Brain (2)
Breast (2)
Anther (1)
Blood vessel (1)
Breast cancer cell (1)
Breast epithelium (1)
Callus culture (1)
Early embryonic cell (1)
Embryo (1)
Endometrial cancer cell line (1)
Endosperm (1)
Frond (1)
Gastrointestinal stromal tumor cell (1)
Hepatocyte (1)
Pollen (1)
Primary cell (1)
Root (1)
Shoot (1)
Venom (1)
Whole body (1)

Disease

Normal (4)
Breast cancer (4)
Malignant neoplasm of ovary (4)
HHV-6B infected (2)
Invasive carcinoma (1)
Brain glioblastoma multiforme (1)
Cardiovascular system disease (1)
Colon cancer (1)
Congenital disorder of glycosylation type II (1)
Endometrial cancer (1)
Hepatocellular carcinoma (1)

Technology Type

Mass Spectrometry (59)
Shotgun proteomics (23)
Bottom-up proteomics (19)
Mass spectrometry (12)
Affinity purification coupled with mass spectrometry proteomics (11)
Data-dependent acquisition (6)
Mass spectrometry assay (4)
NMR spectroscopy (4)
Top-down proteomics (4)
Data-independent acquisition (2)
Illumina MiSeq (1)
NextSeq 500, Illumina HiSeq 4000, ILLUMINA (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
Glycoproteomics (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2000 (11)
Illumina HiSeq 2500 (9)
Liquid Chromatography MS - positive - reverse phase (9)
Illumina HiSeq 4000 (6)
Illumina Genome Analyzer II (5)
Q Exactive (5)
Illumina NovaSeq 6000 (4)
Liquid Chromatography MS - negative - reverse phase (4)
Bruker (3)
Axon GenePix 4000B scanning hardware (2)
6520A Quadrupole Time-of-Flight LC/MS (2)
Dell Precision Tower 7910 workstation (1)
Affymetrix GCS3000 7G SCANNER (1)
GeneChip Hybridization Oveer 640 (1)
Bio-Rad T100 Thermocycler (1)
4100A scanner (1)
10X Genomics Chromium (1)
Illumina MouseWG-6 v2 Expression BeadChip (1)
Illumina Genome Analyzer IIx (1)
NextSeq 2000 (1)
Illumina NextSeq 500 (1)
Illumina MiSeq (1)
NextSeq 550 (1)
NextSeq 500 (1)
LTQ FT (1)
LTQ Orbitrap (1)
MaXis (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Flow injection analysis MS – POS (1)

Publication Date

2005 (66)
2012 (24)
2025 (21)
2024 (19)
2014 (18)
2016 (16)
2015 (16)
2011 (16)
2023 (12)
2021 (12)
2020 (12)
2013 (12)
2010 (11)
2018 (9)
2008 (9)
2007 (7)
2026 (6)
2009 (4)
2022 (4)
2019 (3)
2017 (3)
2006 (2)

UNIPROT ID/AC

A0PJJ9 (66)
A0PJK1 (66)
A0S0A7 (66)
A6NFM2 (66)
A8K3J4 (66)
A8K761 (66)
A8K7W0 (66)
A8MU28 (66)
B1AK53 (66)
B1AM93 (66)
B2R6S5 (66)
B2RB13 (66)
B2RD24 (66)
B3KNC1 (66)
B3KXN9 (66)
B4DG68 (66)
B4DIA3 (66)
B4DK61 (66)
B4DKS0 (66)
B4DUG1 (66)
B7Z1R0 (66)
B7Z3W8 (66)
B7Z4Y6 (66)
B7Z792 (66)
C9JT23 (66)
C9JZ62 (66)
D3DX95 (66)
D9HTE9 (66)
E5KNH5 (66)
E5KS60 (66)

CHEBI ID

CHEBI:15428 (72)
CHEBI:15603 (72)
CHEBI:15354 (70)
CHEBI:10983 (66)
CHEBI:1148 (66)
CHEBI:11805 (66)
CHEBI:11851 (66)
CHEBI:1296 (66)
CHEBI:13705 (66)
CHEBI:15035 (66)
CHEBI:15343 (66)
CHEBI:15355 (66)
CHEBI:15361 (66)
CHEBI:15374 (66)
CHEBI:15377 (66)
CHEBI:15379 (66)
CHEBI:15414 (66)
CHEBI:15440 (66)
CHEBI:15467 (66)
CHEBI:15570 (66)
CHEBI:15589 (66)
CHEBI:15636 (66)
CHEBI:15698 (66)
CHEBI:15699 (66)
CHEBI:15710 (66)
CHEBI:15740 (66)
CHEBI:15748 (66)
CHEBI:15754 (66)
CHEBI:15893 (66)
CHEBI:15901 (66)

Metabolite Name

Citric acid (5)
D-Glucose (5)
Glycine (4)
L-Alanine (4)
L-Lactic acid (4)
L-Phenylalanine (4)
L-Tyrosine (4)
L-Valine (4)
Pyruvic acid (4)
3-Hydroxybutyric acid (3)
3-Hydroxyisovaleric acid (3)
Acetic acid (3)
Cholic acid (3)
Elaidic acid (3)
Ethanol (3)
Formic acid (3)
Glycerol (3)
Guanidoacetic acid (3)
L-Glutamine (3)
L-Histidine (3)
L-Isoleucine (3)
L-Leucine (3)
L-Threonine (3)
Succinate (3)
Tris(2-butoxyethyl) phosphate (3)
Xanthine (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Methylhistidine (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)

First Public Date

2021 (1)
2017 (1)
2016 (1)

Modelling Approach

Logical model (1)

Lab affiliation

Principal Investigator Centre for Targeted Protein Degradation, School of Life Sciences (4)
Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (3)
Memorial Sloan Kettering Cancer Center (3)
Principal Investigator Centre for Targeted Protein Degradation (2)
Principal Investigator • Centre for Targeted Protein Degradation (2)
1Lester and Sue Smith Breast Center and Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA (1)
ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, Australia and Harry Perkins Institute of Medical Research, Perth, Western Australia, Australia (1)
ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, M316, Perth,WA, 6009, Australia (1)
CRUK Manchester Institute, University of Manchester (1)
Cancer Biology Program, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Cancer Biology, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling and Epigenetics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Cancer Signaling and Microenvironment Program,Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Caris Science Inc (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (1)
Centre of Excellence in Plant Energy Biology, Department of Molecular Sciences, University of Western Australia (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Marine, Earth and Atmospheric Sciences, North Carolina State University, Raleigh, NC 27695 (1)
Department of Medicine, Department of Microbiology & Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. (1)
Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA (1)
Department of Microbiology, Immunology and Pathology; Colorado State University; Fort Collins, CO, USA (1)
Department of Oncology, Sidney Kimmel Comprehensive Cancer Center and Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, USA (1)
Department of Oral Biology and Pathology, Faculty of Odontology, Malmö University, Malmö, Sweden Genovis AB, Kävlinge, Sweden (1)
Department of Pediatrics Indiana University School of Medicine Riley Hospital for Children (1)
Department of Pharmacology Faculty of Health Sciences School of Medicine University of Pretoria (1)
Department of Pharmacology, University of North Carolina Chapel Hill School of Medicine, Chapel Hill, NC USA (1)
Department of Radiation Oncology, Robert Wood Johnson Medical School, Rutgers Cancer Institute of New Jersey, New Brunswick, NJ (1)
Director | ARC CoE Plant Energy Biology, The University of Western Australia (1)
Division of Neonatology, Department of Pediatrics, Batchelor Children’s Research Institute, University of Miami Miller School of Medicine, Miami, FL, USA (1)
Equipe ProbiHôte Unité MICALIS Centre INRAE Domaine de Vilvert 78350 Jouy en Josas Tél: 01 34 65 24 69 (1)

IsPrivate

False (67)

Model Flag

Non Kinetic (66)

Classification

viruses (1)

Study type

Transcription profiling by array (60)
RNA-seq of coding RNA (27)
ChIP-seq (14)
ChIP-chip by array (11)
Other (6)
RNA-seq of coding RNA from single cells (5)
Genotyping by array (4)
Comparative genomic hybridization by array (4)
Methylation profiling by array (2)
Genotyping by high throughput sequencing (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of total RNA (2)
Unknown experiment type (1)
Differential (1)
Human - Single-cell sequencing (1)
ATAC-seq (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)

Release Date

2022 (295)
2025 (272)
2021 (270)
2023 (255)
2024 (252)
2020 (212)
2019 (199)
2018 (183)
2016 (136)
2017 (131)
2014 (125)
2015 (119)
2012 (83)
2013 (77)
2011 (56)
2026 (41)
2010 (37)
2008 (24)
2009 (21)
2007 (12)
2006 (7)
2005 (3)
2004 (3)
2003 (3)
2002 (3)
2000 (3)
2001 (1)
1999 (1)
1998 (1)
1997 (1)

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Amplification of TLK2 Induces Genomic Instability via Impairing the G2-M Checkpoint.

Not available

S-EPMC5065758 | biostudies-literature

Deciphering the Bacterial Microbiome of Citrus Plants in Response to M-bM-^@M-^XCandidatus Liberibacter asiaticusM-bM-^@M-^Y-Infection and Antibiotic Treatments

Huanglongbing (HLB) is a worldwide devastating disease of citrus. There are no effective control measures for this newly emerging but century-old disease. A powerful oligonucleotide microarray of high-density 16S rRNA genes, the PhyloChip microarray, has been developed and effectively used to study ...

ORGANISM(S): Citrus limonia

2013-05-09 | E-GEOD-46728 | biostudies-arrayexpress

Mycobacterial cells have dual nickel-cobalt sensors: sequence-relationships and metal-sites of metal-responsive repressors are not congruent.

A novel ArsR-SmtB family transcriptional repressor, KmtR, has been characterised from mycobacteria. Mutants of M. tuberculosis lacking kmtR show elevated expression of Rv2025c encoding a deduced CDF-family metal-exporter. KmtR-dependent repression of the cdf and kmtR operator-promoters was alleviate...

ORGANISM(S): Mycobacterium tuberculosis

2007-09-17 | E-BUGS-49 | biostudies-arrayexpress

NCOA1 Directly Targets M-CSF1 Expression to Promote Breast Cancer Metastasis.

Not available

S-EPMC4083628 | biostudies-literature

Evaluation of the feasibility of the FAST-M maternal sepsis intervention in Pakistan: a protocol.

Not available

S-EPMC9229426 | biostudies-literature

Enrichment of G2/M cell cycle phase in human pluripotent stem cells enhances HDR-mediated gene repair with customizable endonucleases.

Not available

S-EPMC4757933 | biostudies-literature

LIX75 vs H37Rv under Log phase growth (M-BM-1 5 mM Nitrate), and during hypoxic growth (48 h)

Transcription analysis of M-NM-^TnarL mutant (LIX75) versus wild type H37Rv during aerobic growth in absence or presence of 5 mM Nitrate, and during hypoxic growth. This will elucidate the regulatory role of NarL response regulator duirng aerobic growth in absence of presence of exogenous nitrate su...

ORGANISM(S): Mycobacterium tuberculosis

2015-02-09 | E-GEOD-59063 | biostudies-arrayexpress

Effect of cannabidiol on apoptosis and cellular interferon and interferon-stimulated gene responses to the SARS-CoV-2 genes ORF8, ORF10 and M protein.

Not available

S-EPMC9091075 | biostudies-literature

Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South Africa.

Not available

S-EPMC6637627 | biostudies-literature

Efficacy of a Multi-component m-Health Weight-loss Intervention in Overweight and Obese Adults: A Randomised Controlled Trial.

Not available

S-EPMC7503928 | biostudies-literature