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Unknown
(12471)
Transcriptomics
(1179)
Genomics
(734)
Proteomics
(217)
Metabolomics
(31)
Other
(15)
Methylation profiling
(9)
Models
(3)
Clinical
(2)
Genomic
(1)
Organisms
Mus musculus
(418)
Homo sapiens
(408)
Arabidopsis thaliana
(64)
Rattus norvegicus
(36)
Saccharomyces cerevisiae
(30)
Drosophila melanogaster
(29)
Sus scrofa
(16)
Danio rerio
(16)
Pseudomonas putida
(15)
Bos taurus
(14)
Rhizobium leguminosarum
(13)
Streptomyces venezuelae
(13)
Escherichia coli str. K-12 substr. MG1655
(13)
Candida albicans
(11)
Escherichia coli
(11)
Gallus gallus
(10)
Neisseria meningitidis
(9)
Triticum aestivum
(9)
Bacillus amyloliquefaciens
(7)
Salmonella enterica subsp. enterica serovar Typhimurium
(7)
Solanum tuberosum
(7)
Caldicellulosiruptor saccharolyticus
(6)
Streptococcus pneumoniae
(6)
Apis mellifera
(5)
Pseudomonas protegens
(4)
Neisseria gonorrhoeae
(4)
Gasterosteus aculeatus
(4)
Bartonella henselae
(4)
Oryza sativa Indica Group
(4)
Schizosaccharomyces pombe
(4)
Organisms
Mus musculus
(194)
Homo sapiens
(152)
Akkermansia muciniphila
(43)
Drosophila melanogaster
(11)
Chlamydia trachomatis
(10)
Rattus norvegicus
(7)
Danio rerio
(6)
Sus scrofa
(4)
Bos taurus
(4)
Chlamydia pneumoniae
(2)
Solanum tuberosum
(2)
Bacillus pumilus
(2)
Drosophila C virus
(1)
Chlamydia pneumoniae CWL029
(1)
meat metagenome
(1)
Agapanthus praecox subsp. orientalis
(1)
Vogesella sp. EB
(1)
Leptopilina drosophilae
(1)
Leidyana gryllorum
(1)
Mycoavidus sp. B2-EB
(1)
Trypanosoma brucei brucei
(1)
Albopleistophora grylli
(1)
Bacillus sp. EB V-12
(1)
Escherichia coli O157:H7 str. EDL933
(1)
Dimocarpus longan
(1)
Trichoderma citrinoviride
(1)
Orius laevigatus
(1)
Pseudomonas aeruginosa PA14
(1)
human gammaherpesvirus 4
(1)
Akkermansia sp. EB-AMDK43
(1)
Repository
biostudies-arrayexpress
(1120)
ENA
(543)
geo
(270)
pride
(185)
MetaboLights
(28)
MassIVE
(20)
EGA
(11)
iProX
(8)
BioModels
(3)
GNPS
(3)
jPOST
(3)
NODE
(2)
dbGaP
(1)
GPMDB
(1)
PeptideAtlas
(1)
Tissue
Cell culture
(37)
Brain
(21)
Lung
(20)
Epithelial cell
(12)
Lung epithelium
(8)
Permanent cell line cell
(8)
Blood plasma
(6)
Type II pneumocyte
(6)
Blood serum
(5)
Cell suspension culture
(5)
Embryonic stem cell
(5)
Fibroblast
(5)
Leaf
(4)
Heart
(3)
Kidney
(3)
Kidney epithelial cell
(3)
Melanocyte
(3)
Microglial cell
(3)
Root
(3)
T cell
(3)
Blood
(2)
Blood cell
(2)
Early embryonic cell
(2)
Egg
(2)
Liver
(2)
Mature astrocyte
(2)
Monocyte
(2)
Marrow
(1)
Prostate
(1)
Brain
(1)
Disease
Lung cancer
(14)
Normal
(13)
Alzheimer's disease
(11)
Melanoma
(4)
Rheumatoid arthritis
(3)
Mitochondrial complex I deficiency
(2)
Cancer
(2)
Ovarian cancer patient invasive malignant
(1)
Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0)
(1)
Embryonic lethal at day 8.5 to 9.5
(1)
Invasive Ductal Carcinoma
(1)
Colorectal cancer recurrence-free
(1)
Pancreatic cancer
(1)
Porphyria NOS
(1)
Osteosarcoma
(1)
ARR1-SRDX
(1)
None- acute control
(1)
Invasive lobular carcinoma
(1)
Squamous cell carcinoma
(1)
Hyperglycaemic
(1)
Colonic adenocarcinoma
(1)
Barrett's esophagus
(1)
Neurological disease
(1)
None- Acute Control
(1)
Chronic active EB virus infection
(1)
Prostate cancer
(1)
Healthy donor tissue
(1)
Colorectal cancer
(1)
Colorectal Neoplasms
(1)
Not Available
(1)
Technology Type
Mass Spectrometry
(185)
Shotgun proteomics
(97)
Affinity purification coupled with mass spectrometry proteomics
(51)
Bottom-up proteomics
(33)
Mass spectrometry
(24)
Data-dependent acquisition
(15)
Data-independent acquisition
(9)
SWATH MS
(9)
Gel-based experiment
(8)
SRM/MRM
(4)
Top-down proteomics
(4)
Mass spectrometry assay
(3)
Chemical cross-linking coupled with mass spectrometry proteomics
(2)
NMR spectroscopy
(1)
DiaPASEF
(1)
MSE
(1)
Instrument Platform
Illumina HiSeq 2000
(39)
Illumina HiSeq 2500
(29)
BGISEQ-500
(24)
NextSeq 500
(21)
ScanArray Express HT
(17)
Axon GenePix 4000B scanning hardware
(14)
Illumina NovaSeq 6000
(14)
Illumina Genome Analyzer II
(11)
NextSeq 550
(10)
Illumina HiSeq 4000
(10)
PromethION
(5)
DNBSEQ-T7
(5)
GenePix Professional 4200A [Axon Instruments]
(4)
G2565AA DNA microarray scanner [Agilent]
(4)
G2565BA DNA microarray scanner [Agilent]
(4)
ScanArray 4000 [PerkinElmer]
(3)
428 [Affymetrix]
(3)
GenePix Personal 4100A [Axon Instruments]
(3)
Axon- GenePix4000B
(3)
ScanArray Express HT [PerkinElmer]
(3)
Scanning hardware
(3)
Maxwell® AS2000 instrument
(2)
Maxwell® 16 AS2000
(2)
G2565BA DNA microarray scanner
(2)
Axon Instruments GenePix 4000B scanner
(2)
Illumina Genome Analyzer
(2)
Agilent G2505B scanner
(2)
GenePix 4000A [Axon Instruments]
(2)
DNA Microarray Scanner BA [Agilent Technologies]
(2)
418 [Affymetrix]
(2)
Publication Date
2013
(117)
2010
(116)
2015
(109)
2014
(105)
2012
(104)
2011
(99)
2016
(90)
2025
(84)
2023
(83)
2022
(74)
2008
(70)
2024
(65)
2005
(63)
2007
(63)
2009
(56)
2006
(56)
2020
(52)
2021
(49)
2026
(48)
2019
(47)
2018
(38)
2017
(37)
2004
(12)
2003
(3)
2002
(1)
UNIPROT ID/AC
A0A024R8H9
(1)
A0A024RC46
(1)
A0A087WTX5
(1)
A0A087WVW2
(1)
A0A087WVZ5
(1)
A0A087WWA5
(1)
A0A087WWK8
(1)
A0A087WXI0
(1)
A0A087WYL9
(1)
A0A087X130
(1)
A0A087X1S3
(1)
A0A087X1V9
(1)
A0A0A0MR66
(1)
A0A0A0MS07
(1)
A0A0A0MS51
(1)
A0A0A0MSA7
(1)
A0A0C4DG89
(1)
A0A0C4DGT3
(1)
A0AVT1
(1)
A0FGR8
(1)
A0FGR8-2
(1)
A0FGR8-6
(1)
A0M8Q6
(1)
A0MZ66
(1)
A0PJX4
(1)
A1L0T0
(1)
A1L390
(1)
A2A3K4
(1)
A2BFH1
(1)
A2NUT2
(1)
ENSEMBL ID
ENSG00000170477
(1)
ENSG00000229353
(1)
CHEBI ID
CHEBI:28044
(14)
CHEBI:16335
(13)
CHEBI:27897
(13)
CHEBI:7916
(12)
CHEBI:17596
(12)
CHEBI:30769
(12)
CHEBI:6650
(11)
CHEBI:30753
(11)
CHEBI:15354
(11)
CHEBI:26271
(10)
CHEBI:17015
(10)
CHEBI:16750
(9)
CHEBI:25017
(9)
CHEBI:16610
(9)
CHEBI:28683
(9)
CHEBI:18211
(9)
CHEBI:16027
(9)
CHEBI:16765
(8)
CHEBI:16680
(8)
CHEBI:16856
(8)
CHEBI:22660
(8)
CHEBI:18186
(8)
CHEBI:16811
(8)
CHEBI:17533
(8)
CHEBI:16708
(8)
CHEBI:27470
(8)
CHEBI:30763
(8)
CHEBI:16235
(8)
CHEBI:17509
(8)
CHEBI:17750
(8)
Metabolite Name
Inosine
(6)
Xanthosine
(5)
Taurine
(5)
Guanosine
(5)
Adenine
(5)
Spermidine
(5)
Syringic acid
(4)
Pantothenic acid
(4)
Oleamide
(4)
Uridine
(4)
Tryptophan
(4)
Thymidine
(4)
Proline
(4)
Kynurenine
(4)
Xanthine
(4)
Phenylalanine
(4)
Choline
(4)
Valine
(4)
4-hydroxybenzoic acid
(4)
Malic acid
(4)
Agmatine
(3)
Alpha-ketoglutaric acid
(3)
Glyphosate
(3)
Glutamic acid
(3)
Folic acid
(3)
Phosphoenolpyruvate
(3)
Stachydrine
(3)
Anthranilate
(3)
Oleoyl ethanolamide
(3)
D-glucosamine 6-phosphate
(3)
First Public Date
2014
(82)
2019
(64)
2025
(60)
2024
(56)
2023
(55)
2026
(36)
2022
(34)
2020
(29)
2021
(26)
2017
(26)
2015
(24)
2018
(20)
2016
(20)
2013
(11)
Modelling Approach
Ordinary differential equation model
(3)
Study status
Recruiting
(1)
Completed
(1)
Lab affiliation
Moffitt Cancer Center Tampa, FL, USA
(13)
Moffitt Cancer Center
(9)
Emory University School of Medicine Departments of Biochemistry and Neurology
(5)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA
(4)
Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center
(3)
Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK.
(2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX, Amsterdam, The Netherlands
(2)
Emory University School of Medicine Department of Biochemistry
(2)
Moffitt Cancer Center Tampa, FL
(2)
Professor, Emory University School of Medicine Departments of Biochemistry and Neurology
(2)
TIGEM
(2)
University of Cologne, Germany
(2)
University of Colorado-Anschutz Campus
(2)
(1) Maisonneuve Rosemont Hospital Research Center, CIUSSS Est de l’Île de Montréal, Montreal, QC, Canada (2) Department of Medicine, University of Montreal, Montréal, QC, Canada
(1)
3 Univ. Grenoble Alpes, CNRS, INRAE, CEA, IRIG-LPCV, 38000 Grenoble, FranceLPCV - to be completed 4. Univ. Grenoble Alpes, CEA, INSERM, UA13 BGE, CNRS, CEA, FR2048, Grenoble, France
(1)
Affiliation Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden
(1)
Assistant Professor Department of Neurology
(1)
Associate Professor of Neuroscience and BIO5 Institute University of Arizona
(1)
Associate Professor, Department of Neurology, Emory University
(1)
Associate Professor, Department of Neurology, Yale University School of Medicine
(1)
Associate Research Professor, Institut de recherches cliniques de Montréal (IRCM) Professeure agrégée, Département de biochimie et médecine moléculaire, Université de Montréal Associate Professor, Division of Experimental Medicine, McGill University
(1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany
(1)
Beijing proteome research center, Beijing, China
(1)
Biology Department, University of Washington, Seattle, WA
(1)
Biomolecular Mass Spectrometry and Proteomics, University of Utrecht, the Netherlands
(1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France
(1)
CECAD Forschungszentrum, Joseph-Stelzmann-Str. 26, 50931 Köln
(1)
Cell Biology - Emory University
(1)
Center for Genetic Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA Department of Pharmacology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA
(1)
Center of Allergy and Environment (ZAUM), Technical University of Munich and Helmholtz Center Munich, 80802 Munich, Germany Department of Immunobiology, Université de Lausanne, 1066 Epalinges, Switzerland
(1)
Tags
pathogen
(21)
pathogen:bacterium
(18)
xref:PubMed:39826545
(13)
xref:PubMed:17999768
(6)
xref:PubMed:30560907
(4)
xref:PubMed:35235780
(4)
xref:PubMed:27239026
(4)
xref:PubMed:37216554
(4)
xref:PubMed:40568081
(4)
xref:PubMed:41603733
(4)
xref:PubMed:25564442
(4)
xref:PubMed:39000232
(3)
xref:PubMed:30591554
(3)
xref:PubMed:33420489
(3)
xref:PubMed:38056452
(3)
xref:PubMed:34995303
(3)
xref:PubMed:39863595
(3)
xref:PubMed:29765017
(3)
xref:PubMed:35550615
(3)
xref:PubMed:37565751
(3)
xref:PubMed:38174321
(3)
xref:PubMed:27183470
(3)
xref:PubMed:34504070
(3)
xref:PubMed:37586372
(2)
xref:PubMed:16449999
(2)
xref:PubMed:40503901
(2)
xref:PubMed:39138218
(2)
xref:PubMed:16002666
(2)
xref:PubMed:33230114
(2)
xref:PubMed:36785787
(2)
Keyword
CPT
(1)
PET/CT
(1)
IsPrivate
False
(3)
Classification
bacteria
(18)
viruses
(2)
protozoa
(1)
Modification
0.984016
(1)
15.994915
(1)
57.021464
(1)
Study type
Transcription profiling by array
(595)
RNA-seq of coding RNA
(203)
ChIP-seq
(94)
Methylation profiling by high throughput sequencing
(30)
ChIP-chip by array
(25)
ChIP-chip by tiling array
(24)
Comparative genomic hybridization by array
(23)
Other
(20)
DNA-seq
(14)
Unknown experiment type
(13)
RNA-seq of coding RNA from single cells
(11)
High-throughput sequencing
(9)
RNA-seq of non coding RNA
(9)
ATAC-seq
(6)
Methylation profiling by array
(4)
Transcription profiling by RT-PCR
(3)
RNA-seq of total RNA
(3)
Cell line - High-throughput sequencing
(2)
Transcription profiling by tiling array
(2)
MicroRNA profiling by high throughput sequencing
(2)
RIP-seq
(2)
MicroRNA profiling by array
(2)
CUT&RUN
(2)
Genotyping by high throughput sequencing
(2)
Differential
(1)
MeDIP-seq
(1)
Animal - Single-cell sequencing
(1)
Human - High-throughput sequencing
(1)
Plant - High-throughput sequencing
(1)
Translation profiling
(1)
Release Date
2022
(1412)
2021
(1361)
2023
(1247)
2025
(1224)
2024
(1117)
2020
(1047)
2019
(839)
2018
(774)
2017
(644)
2016
(643)
2015
(593)
2014
(524)
2013
(410)
2012
(317)
2011
(314)
2010
(268)
2009
(177)
2026
(173)
2008
(135)
2007
(103)
2006
(88)
2005
(84)
2004
(25)
2003
(15)
1999
(14)
2001
(12)
2000
(12)
2002
(11)
1998
(4)
1997
(4)
Location
China
(1)
Japan
(1)
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Vogesella sp. EB strain:EB
Vogesella sp. EB strain:EB Genome sequencing and assembly
PRJNA286802
|
ENA
Cite
Akkermansia sp. EB-AMDK43
Akkermansia sp. EB-AMDK43 Genome sequencing
PRJNA1012816
|
ENA
Cite
Bacillus sp. EB V-12
Bacillus sp. EB V-12 Genome sequencing
PRJNA1356350
|
ENA
Cite
Faecalibacterium prausnitzii strain:EB-FPDK11
Faecalibacterium prausnitzii strain:EB-FPDK11 Genome sequencing
PRJNA757920
|
ENA
Cite
Bacillus cereus strain:EB-40 | isolate:EB-40
Genome sequencing and assembly of Bacillus cereus isolate EB-40
PRJNA922520
|
ENA
Cite
Akkermansia muciniphila strain:EB-AMDK-19
Akkermansia muciniphila strain:EB-AMDK19 Genome sequencing and hybrid assembly
PRJNA429289
|
ENA
Cite
Akkermansia muciniphila strain:EB-AMDK-27
Akkermansia muciniphila strain:EB-AMDK-27 Genome sequencing and assembly
PRJNA434535
|
ENA
Cite
Akkermansia muciniphila strain:EB-AMDK-28
Akkermansia muciniphila strain:EB-AMDK-28 Genome sequencing and assembly
PRJNA434536
|
ENA
Cite
Akkermansia muciniphila strain:EB-AMDK-31
Akkermansia muciniphila strain:EB-AMDK-31 Genome sequencing and assembly
PRJNA434605
|
ENA
Cite
Akkermansia muciniphila strain:EB-AMDK-33
Akkermansia muciniphila strain:EB-AMDK-33 Genome sequencing and assembly
PRJNA434606
|
ENA
Cite
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