Ebpr - OmicsDI

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Genomics (138)
Unknown (63)
Transcriptomics (5)
Proteomics (5)
Metabolomics (1)

Organisms

Mycobacterium tuberculosis SP7 (4)
Mycobacterium tuberculosis SP10 (4)
Mycobacterium tuberculosis SP13 (4)
Mycobacterium tuberculosis SP22 (4)
Chlamydomonas reinhardtii (4)
Enterococcus mundtii CRL35 (4)
Oncorhynchus tshawytscha (4)
Pseudomonas canadensis (4)
Pseudomonas aeruginosa PAO1H2O (4)
Human alphaherpesvirus 1 strain 17 (4)
Mycobacterium tuberculosis SP1 (4)
Marchantia polymorpha subsp. ruderalis (4)
Methylocystis sp. (4)
Exiguobacterium sp. SH31 (4)
Palaemonetes sp. common grass shrimp associated circular virus (4)
Amaranthus tricolor (4)
Spirochaeta sp. ELBA (4)
Clavibacter nebraskensis NCPPB 2581 (4)
Porites pukoensis (4)
Porphyromonas gingivalis (4)
Leishmania tarentolae (4)
Porphyromonas gingivalis W83 (4)
mixed sample (2)
Enterococcus faecalis (2)
Candidatus Accumulibacter phosphatis (1)
uncultured bacterium (1)
Archaea (1)
Bacteria (1)
Candidatus Accumulibacter (1)
Accumulibacter sp. (1)

Organisms

wastewater metagenome (33)
activated sludge metagenome (13)
bioreactor sludge metagenome (11)
bioreactor metagenome (9)
Candidatus Accumulibacter phosphatis (2)
sludge metagenome (2)
biofilm metagenome (2)
Candidatus Competibacter denitrificans Run_A_D11 (1)
Candidatus Accumulibacter sp. BA-94 (1)
Candidatus Accumulibacter appositus (1)
Candidatus Accumulibacter adjunctus (1)
Candidatus Accumulibacter cognatus (1)
Candidatus Accumulibacter regalis (1)
Candidatus Accumulibacter sp. SK-11 (1)
Phycicoccus elongatus Lp2 (1)
mixed sample (1)
Candidatus Contendobacter odensis Run_B_J11 (1)
Candidatus Accumulibacter vicinus (1)
Nostocoides jenkinsii Ben 74 (1)
Nostocoides japonicum T1-X7 (1)
Nostocoides australiense Ben110 (1)
Enterococcus faecalis (1)
uncultured prokaryote (1)

Repository

ENA (138)
pride (4)
geo (3)
biostudies-arrayexpress (2)
iProX (1)
MetaboLights (1)

Technology Type

Mass Spectrometry (4)
Data-dependent acquisition (2)
Shotgun proteomics (2)
Mass spectrometry assay (1)
Bottom-up proteomics (1)

Instrument Platform

Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)

Publication Date

2014 (2)
2026 (2)
2010 (1)
2018 (1)
2009 (1)
2019 (1)
2022 (1)
2015 (1)

Metabolite Name

Propanoic acid, 2-methyl-, 1-(1,1-dimethylethyl)-2-methyl-1,3-propanediyl ester (1)
Glycoside (1)
N,N-dimethylglycine (1)
Ethanedioic acid (1)
2-Butenedioic acid (1)
Cellobiose (1)
3-Cyanoalanine (1)
Leucine (1)
4-Aminobutyric acid (1)
Glucopyranose (1)
Fructose (1)
Ribose (1)
Serine (1)
Stearic acid (1)
Valine (1)
Alanine (1)
5-Oxoproline (1)
Glycine (1)
Pyroglutamic acid (1)
Threonine (1)
Proline (1)
Phenylalanine (1)
Maltose (1)
Isoleucine (1)
Aspartic acid (1)
Asparagine (1)
Sucrose (1)
Trehalose (1)
Pyruvic acid (1)
Melibiose (1)

First Public Date

2017 (36)
2014 (13)
2013 (13)
2025 (10)
2018 (10)
2026 (8)
2020 (8)
2016 (7)
2015 (7)
2024 (6)
2023 (6)
2022 (5)
2019 (5)
2021 (4)

Classification

bacteria (1)

Study type

Transcription profiling by array (2)

Release Date

2019 (7)
2017 (6)
2021 (5)
2016 (5)
2010 (4)
2024 (4)
2023 (4)
2022 (4)
2014 (3)
2020 (3)
2018 (3)
2015 (3)
2011 (3)
2025 (2)
2013 (2)
2002 (2)
2026 (1)
2012 (1)
2007 (1)
2005 (1)
2000 (1)

Lab affiliation

Department of Biotechnology, TU Delft, The Netherlands (2)
Biotechnology, Applied Sciences, Delft University of Technology, The Netherlands (1)
The University of Queensland, Advanced Water Management Centre (AWMC), QLD 4072, Australia (1)

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Evaluation of extraction solvents for untargeted metabolomics analysis of enrichment reactor cultures performing enhanced biological phosphorus removal (EBPR)

INTRODUCTION: The extraction solvent mixtures were optimized for untargeted metabolomics analysis of microbial communities from two laboratory scale activated sludge reactors performing enhanced biological phosphorus removal (EBPR).

OBJECTIVE: To develop a ...

2019-08-16 | MTBLS884 | MetaboLights

EBPR SBR 2025

EBPR SBR 2025 Raw sequence reads

PRJNA1418447 | ENA

Metatranscriptomic array analysis of “Candidatus Accumulibacter phosphatis”-enriched EBPR Sludge

Here we report a metatranscriptomic analysis of gene expression and regulation of “Candidatus Accumulibacter”-enriched lab-scale sludge during enhanced biological phosphorus removal (EBPR). Medium density oligonucleotide microarrays were generated with probes targeting most predicted genes hypothesi...

ORGANISM(S): Candidatus Accumulibacter phosphatis uncultured bacterium

2009-12-31 | GSE17857 | GEO

Metagenome of lab-reactor for EBPR

Metagenome of lab-reactor for EBPR Genome sequencing and assembly

PRJNA1018460 | ENA

EBPR and S2EBPR metagenomic comparison in US and Canada

EBPR and S2EBPR metagenomic comparison in US and Canada Raw sequence reads

PRJNA1223043 | ENA

'Candidatus Accumulibacter' gene expression in response to dynamic EBPR conditions.

Not available

S-EPMC3105699 | biostudies-literature

Bicarbonate enhances expression of the endocarditis and biofilm associated pilus locus, ebpR-ebpABC, in Enterococcus faecalis.