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TranscriptomicsRNAi profiling of Arabidopsis Col-0 plants (air control), 8 week old Col-0 plants treated for 24 hours with ethylene gas (10 ppm), and artificial microRNA knockdown mutants, amiR-ETP1/2 - interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis
A complex interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 is essential for triggering ethylene responses in plants. The gaseous plant hormone ethylene can trigger myriad physiological and morphological responses in plants. While many ethylene signaling pathway component...
ORGANISM(S): Arabidopsis thaliana 
2009-12-05 | E-GEOD-14247 | biostudies-arrayexpress
TranscriptomicsUnexpected diversity of chloroplast non-coding RNAs as revealed by deep sequencing of the Arabidopsis transcriptome
Non-coding RNAs (ncRNAs) are widely expressed in both prokaryotes and eukaryotes. Eukaryotic ncRNAs are commonly small (18-25 nt) micro- and small interfering RNAs involved in post-transcriptional gene silencing, while prokaryotic ncRNAs vary in size and are involved in various aspects of gene regul...
ORGANISM(S): Arabidopsis thaliana 
2011-10-13 | E-MTAB-4478 | biostudies-arrayexpress
UnknownSingle-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex.
Not available
S-EPMC5570439 | biostudies-literature
UnknownA transcription factor hierarchy defines an environmental stress response network.
Not available
S-EPMC5217750 | biostudies-literature
UnknownUnexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome.
Not available
S-EPMC3276175 | biostudies-literature
UnknownRobust single-cell DNA methylome profiling with snmC-seq2.
Not available
S-EPMC6147798 | biostudies-literature
UnknownThe complex architecture and epigenomic impact of plant T-DNA insertions.
Not available
S-EPMC6338467 | biostudies-literature
TranscriptomicsHighly integrated epigenome maps in Arabidopsis - methylcytosine immunoprecipitation
Part of a set of highly integrated epigenome maps for Arabidopsis thaliana. Keywords: methylcytosine ChIP-chip on tiling array Identification of cytosine DNA methylation by methylcytosine immunoprecipitation and whole-genome oligonucleotide tiling microarrays for wildtype Columbia-0.
ORGANISM(S): Arabidopsis thaliana 
2008-04-20 | E-GEOD-10969 | biostudies-arrayexpress
GenomicsHighly integrated single base resolution maps of the epigenome in Arabidopsis
Whole genome shotgun bisulfite sequencing, small RNA sequencing and transcriptome sequencing of wildtype Arabidopsis plants (Col-0), and met1, drm1 drm2 cmt3, and ros1 dml2 dml3 null mutants using the Illumina Genetic Analyzer. A comparison was performed with regions of the genome containing cytosin...
ORGANISM(S): Arabidopsis thaliana 
2008-04-20 | E-GEOD-10877 | biostudies-arrayexpress
UnknownMolecular Criteria for Defining the Naive Human Pluripotent State.
Not available
S-EPMC5065525 | biostudies-literature
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