Ecotype - OmicsDI

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Transcriptomics (8830)
Genomics (1799)
Unknown (748)
Proteomics (373)
Metabolomics (199)
Other (19)
Models (5)
Methylation profiling (4)

Organisms

Mus musculus (1181)
Arabidopsis thaliana (1036)
Saccharomyces cerevisiae (866)
Caenorhabditis elegans (711)
Drosophila melanogaster (558)
Homo sapiens (409)
Escherichia coli (212)
Rattus norvegicus (188)
Candida albicans (142)
Danio rerio (134)
Staphylococcus aureus (102)
Schizosaccharomyces pombe (81)
Mycobacterium tuberculosis (80)
Thermus thermophilus HB8 (72)
Pseudomonas aeruginosa (72)
Escherichia coli str. K-12 substr. MG1655 (65)
Oryza sativa (60)
Streptococcus pneumoniae D39 (58)
Triticum aestivum (54)
Oryza sativa Japonica Group (50)
Plasmodium falciparum (47)
Gallus gallus (46)
Sus scrofa (43)
Streptococcus pneumoniae (42)
Streptomyces coelicolor (41)
Anopheles gambiae (41)
Campylobacter jejuni (39)
Streptococcus pyogenes (37)
Aedes aegypti (37)
Hordeum vulgare (37)

Organisms

Arabidopsis thaliana (287)
plant metagenome (30)
Aegilops tauschii (4)
Populus nigra (4)
Lotus japonicus (4)
Ralstonia solanacearum (4)
Homo sapiens (4)
Panicum virgatum (3)
Marchantia polymorpha (3)
marine metagenome (3)
Panicum capillare (2)
Oxybasis rubra (2)
Lotus burttii (2)
Littorina saxatilis (2)
Nicotiana attenuata (2)
Anaplasma phagocytophilum (2)
Fagopyrum esculentum subsp. esculentum (2)
Arabidopsis thaliana x Arabidopsis arenosa (2)
Silene acaulis (2)
Brachypodium distachyon (2)
Withania somnifera (2)
Chenopodium quinoa (2)
Triticum turgidum (2)
Medicago truncatula (2)
Arabidopsis (2)
rhizosphere metagenome (2)
Prochlorococcus marinus str. MIT 9303 (1)
Prochlorococcus marinus str. MIT 9301 (1)
Heliosperma pusillum (1)
Gymnocypris przewalskii ssp. n. CT-2017 (1)

Repository

biostudies-arrayexpress (9682)
ENA (813)
MassIVE (205)
MetaboLights (198)
geo (150)
pride (57)
jPOST (56)
iProX (26)
PAXDB (22)
EVA (17)
EGA (14)
GPMDB (9)
Cell Collective (3)
PeptideAtlas (3)
FAIRDOMHub (2)
ExpressionAtlas (1)
MetabolomicsWorkbench (1)

Tissue

Plant cell (18)
Leaf (15)
Root (14)
Rosette (7)
Photosynthetic cell (6)
Cell culture (5)
Seedling (3)
Whole body (3)
Shoot (2)
Plant (1)
Cell suspension culture (1)
Diploid cell (1)
Embryo (1)
Flower (1)
Pollen (1)
Protonema (1)

Disease

Normal (17)
Uninfected (2)
Hypertension (2)
HHV-6B infected (2)
Porphyria NOS (2)
Control (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Fatty liver disease (1)
FRD1234 (1)
Yersinia enterocolitica WAP infected (virulent) (1)
Wounded; tumour (1)
Measles virus infected (1)
Nondiabetic (1)
Inflammatory bowel disease (1)
Uninfected 11dpi (1)
Dengue 2 (JAM1409) infected (1)
S. mansoni - exposed (1)
Blumeria graminis f.sp. Hordei inoculated (1)
12 DAI with PepMV-EU isolate (1)
Sham infected (1)
Infected with IBDV strain F52/70 (1)
Wolbachia infected (1)
Cladosporium fulvum infected (1)
Spinal muscular atrophy (1)
Schistosome-exposed (1)
Control exposed to non-pathogenic DSM-350 (1)
Cultured with Candida albicans CAF2-1 (1)
1dpi (1)
Malaria (1)
CAMN (1)

Technology Type

Mass spectrometry (124)
Mass spectrometry assay (65)
Mass Spectrometry (58)
Shotgun proteomics (40)
NMR spectroscopy (10)
Gel-based experiment (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Bottom-up proteomics (5)
Data-dependent acquisition (3)
SWATH MS (3)
Top-down proteomics (3)
Illumina HiSeq 2500 (1)
NMR spectroscopy assay (1)
ESI (1)

Instrument Platform

Illumina HiSeq 2000 (199)
NextSeq 500 (146)
Illumina NovaSeq 6000 (140)
Illumina HiSeq 2500 (107)
Illumina HiSeq 4000 (73)
Illumina MiSeq (71)
BGISEQ-500 (63)
DNBSEQ-T7 (45)
NextSeq 2000 (38)
HiSeq X Ten (30)
Illumina HiSeq 3000 (27)
Illumina HiSeq 1500 (26)
NextSeq 550 (23)
Illumina Genome Analyzer II (21)
Illumina NovaSeq X (20)
Scanning hardware (18)
GenePix 4000B [Axon Instruments] (15)
Illumina Genome Analyzer IIx (14)
Illumina HiSeq 1000 (12)
Ion Torrent Proton (11)
DNBSEQ-G400 (11)
Agilent G2505B scanner (9)
ScanArray Express HT (9)
MinION (9)
AB SOLiD 4 System (8)
PromethION (7)
Axon GenePix 4000A scanning hardware (7)
G2565AA DNA microarray scanner [Agilent] (7)
Axon- GenePix4000B (7)
ScanArray Lite [PerkinElmer] (6)

Publication Date

2013 (1546)
2010 (1414)
2011 (994)
2012 (941)
2014 (911)
2015 (717)
2008 (572)
2016 (492)
2009 (486)
2007 (261)
2023 (211)
2021 (199)
2022 (194)
2024 (179)
2025 (178)
2005 (176)
2020 (162)
2019 (161)
2026 (153)
2017 (148)
2018 (133)
2006 (121)
2004 (37)
2003 (16)
2002 (1)
2001 (1)

UNIPROT ID/AC

449447.MAE_04790 (6)
449447.MAE_07440 (6)
449447.MAE_10380 (6)
449447.MAE_10510 (6)
449447.MAE_10730 (6)
449447.MAE_10800 (6)
449447.MAE_13300 (6)
449447.MAE_25300 (6)
449447.MAE_41160 (6)
449447.MAE_43300 (6)
449447.MAE_45140 (6)
449447.MAE_45460 (6)
449447.MAE_47540 (6)
449447.MAE_48060 (6)
449447.MAE_48410 (6)
449447.MAE_49540 (6)
449447.MAE_52620 (6)
449447.MAE_54620 (6)
449447.MAE_54990 (6)
449447.MAE_55610 (6)
449447.MAE_58080 (6)
449447.MAE_58140 (6)
449447.MAE_59350 (6)
449447.MAE_60500 (6)
ACKA_MICAN (6)
AMPA_MICAN (6)
APT_MICAN (6)
ARGB_MICAN (6)
ARGC_MICAN (6)
ASSY_MICAN (6)

CHEBI ID

CHEBI:30769 (43)
CHEBI:18186 (34)
CHEBI:27897 (34)
CHEBI:15428 (33)
CHEBI:28044 (32)
CHEBI:27266 (32)
CHEBI:18257 (31)
CHEBI:17992 (29)
CHEBI:25094 (29)
CHEBI:15741 (29)
CHEBI:16704 (29)
CHEBI:26271 (28)
CHEBI:18237 (28)
CHEBI:28300 (28)
CHEBI:16708 (28)
CHEBI:16449 (28)
CHEBI:17822 (27)
CHEBI:16811 (27)
CHEBI:25017 (27)
CHEBI:17568 (27)
CHEBI:29016 (27)
CHEBI:22660 (26)
CHEBI:6650 (26)
CHEBI:16335 (26)
CHEBI:15756 (26)
CHEBI:16750 (25)
CHEBI:18012 (25)
CHEBI:30915 (25)
CHEBI:15603 (25)
CHEBI:7916 (24)

Metabolite Name

Adenine (38)
Hypoxanthine (36)
Uridine (34)
Adenosine (33)
L-Tyrosine (33)
Choline (30)
L-Phenylalanine (30)
Uracil (29)
Guanine (28)
L-Tryptophan (28)
Guanosine (26)
Sucrose (26)
Inosine (26)
Cytidine (25)
L-Histidine (23)
Betaine (22)
Thymine (22)
Pantothenic acid (22)
Oleamide (22)
Spermidine (22)
Cytosine (22)
L-Serine (22)
L-Valine (22)
L-Threonine (21)
Citric acid (21)
L-Glutamine (21)
Azelaic acid (21)
Creatine (21)
Ornithine (20)
Creatinine (20)

First Public Date

2014 (311)
2021 (68)
2018 (62)
2022 (46)
2013 (46)
2024 (42)
2026 (41)
2020 (34)
2025 (32)
2017 (29)
2016 (28)
2023 (26)
2019 (26)
2015 (19)
2012 (3)

Classification

bacteria (2)
fungi (1)

Modification

N6 (2)
N6-dimethyl-L-lysine (2)

Study type

Transcription profiling by array (5543)
RNA-seq of coding RNA (1268)
ChIP-seq (735)
ChIP-chip by tiling array (409)
Comparative genomic hybridization by array (321)
Unknown experiment type (237)
RNA-seq of non coding RNA (192)
Transcription profiling by tiling array (183)
DNA-seq (152)
Other (90)
ChIP-chip by array (73)
Methylation profiling by high throughput sequencing (58)
RNA-seq of total RNA (52)
High-throughput sequencing (47)
Genotyping by high throughput sequencing (38)
RNA-seq of coding RNA from single cells (32)
Cell line - High-throughput sequencing (21)
Transcription profiling by SAGE (20)
Plant - High-throughput sequencing (19)
Methylation profiling by array (17)
Animal - High-throughput sequencing (15)
Genotyping by array (11)
Transcription profiling by RT-PCR (11)
Proteomic profiling by array (10)
ATAC-seq (8)
MNase-seq (7)
One-color microarray (7)
Ribo-seq (7)
Bisulfite-seq (6)
RIP-seq (6)

Release Date

2013 (1562)
2010 (1419)
2011 (997)
2012 (953)
2014 (932)
2015 (716)
2008 (574)
2016 (499)
2009 (476)
2007 (241)
2023 (234)
2022 (214)
2020 (191)
2021 (177)
2005 (177)
2025 (171)
2017 (157)
2019 (156)
2024 (155)
2018 (154)
2006 (118)
2026 (97)
2004 (40)
2003 (13)
2002 (4)
2000 (2)
2001 (1)

Lab affiliation

University of the Balearic Islands (4)
Laboratory of Membrane Biogenesis, University of Bordeaux, France (3)
EDyP (2)
Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York, United States (2)
Biochemistry and Cell Signalling in Nitric Oxide Group Area of Biochemistry and Molecular Biology. Department of Experimental Biology. University of Jaén /University Institute for Research in Olive Oil and Olive Oils (Spain) (1)
Biochemistry of Plants, Faculty for Biology and Biotechnology, Ruhr-University Bochum, UniversitÃƒÂ¤tsstrasse 150, 44801 Bochum, Germany (1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (1)
CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
Center for Plant Molecular Biology (ZMBP) Plant Physiology University of Tübingen Tübingen Germany (1)
Centre for Proteome Research, Institute of Integrative Biology, University of Liverpool (1)
Centro Nacional de Biotecnología (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain (1)
Deparment of Boichemistry and Structural Biology Center for Molecular Protein Science Lund University PO Box 124 22100 Lund Sweden (1)
Department of Biochemistry & Molecular Biology, Michigan State University (1)
Department of Biology, Washington University-St. Louis St. Louis, Missouri 63130 USA (1)
Department of Cellular Biochemistry Institute for Biochemistry and Biotechnology Martin-Luther-University Halle-Wittenberg Kurt-Mothes-Str. 3 06120 Halle (Saale) (1)
Department of Chemistry, Biology and Biotechnology, University of Perugia, Italy (1)
Department of Chemistry, Michigan State University (1)
Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, NC (1)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (1)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (1)
Fudan University (1)
Fujian Institute of Subtropical Botany (1)
Innovative Institute for Plant Health, Zhongkai University of Agriculture and Engineering, Guangzhou, China (1)
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 542/2, 160 00, Prague 6, Czech Republic (1)
Instituto de Bioquimica Vegetal y Fotosintesis Consejo Superior de Investigaciones Cientificas Avda. Americo Vespucio, 49 Sevilla Spain (1)
Instituto de Bioquimica Vegetal y Fotosintesis. CSIC (1)
Instituto de Bioquímca Vegetal y Fotosíntesis-CSIC Avda. Américo Vespucio, 49 41092-Sevilla Spain (1)
Laboratoire Reproduction et DÉveloppement des Plantes, ENS de Lyon (1)
Laboratoire de Spectrométrie de Masse Bio-Organique (LSMBO) Institut Pluridisciplinaire Hubert Curien (IPHC-UMR7178) CNRS - Université de Strasbourg Strasbourg, FRANCE (1)
Leibniz Institute of Plant Biochemistry; Center for Structural Mass Spectrometry, Institute of Pharmacy, Martin-Luther University Halle-Wittenberg (1)

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Panicum capillare strain:Norris ecotype | cultivar:Norris ecotype

Panicum capillare, Norris ecotype genome sequencing

PRJNA337390 | ENA

Panicum capillare strain:Bridger ecotype | cultivar:Bridger ecotype

Panicum capillare, Bridger ecotype genome sequencing

PRJNA337379 | ENA

Anaplasma phagocytophilum strain:ecotype I | isolate:SLO-1

Anaplasma phagocytophilum strain:ecotype I | isolate:SLO-1 Genome sequencing

PRJNA1145303 | ENA

Eutrema halophilum strain:Ecotype Shandong

Eutrema halophilum strain:Ecotype Shandong Transcriptome or Gene expression

PRJNA159239 | ENA

Striga hermonthica kibos ecotype microRNA annotations

PRJNA1188022 | ENA

2-week-old Arabidopsis seedlings (Columbia ecotype)

Comparison of TopHat alignments and assessment of spurious splice junctions for 32nt and 76nt read lengths. Total RNA from 2-week-old Arabidopsis thaliana (ecotype Columbia) seedlings grown on MS plates was isolated using RNeasy Plant Mini Kit from Qiagen. To remove any contaminating DNA, RNA was t...

ORGANISM(S): Arabidopsis thaliana

2011-09-24 | E-GEOD-32318 | biostudies-arrayexpress

Arabidopsis thaliana Colombia-0 ecotype, Whole Genome Assembly

Arabidopsis thaliana Colombia-0 ecotype, Whole Genome Assembly Project

PRJEB422 | ENA

Arabidopsis thaliana strain:ecotype Col-0

Arabidopsis thaliana strain:ecotype Col-0 Raw sequence reads

PRJNA485392 | ENA

Transcription profiling of Arabidopsis thaliana ecotype Col-0 vs Arabidopsis thaliana ecotype Ler, both grown to Boyes scale 1.04 performed at VIB

A dye swap experiment to compare Arabidopsis thaliana ecotype Col-0 with Arabidopsis thaliana ecotype Ler, both grown to Boyes scale 1.04 at VIB, Plant systems biology, Gent, Belgium

ORGANISM(S): Arabidopsis thaliana

2005-01-01 | E-CAGE-10 | biostudies-arrayexpress

Phyllostachys edulis cultivar:ecotype

Phyllostachys edulis cultivar:ecotype Raw sequence reads

PRJNA554957 | ENA

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12007 Results

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