Edta - OmicsDI

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Transcriptomics (6206)
Proteomics (5458)
Genomics (2344)
Unknown (2052)
Metabolomics (298)
Other (15)
Methylation profiling (8)
Genomic (6)
Clinical (6)

Organisms

Homo sapiens (2098)
Mus musculus (1496)
Drosophila melanogaster (862)
Saccharomyces cerevisiae (384)
Caenorhabditis elegans (333)
Arabidopsis thaliana (278)
Rattus norvegicus (146)
Schizosaccharomyces pombe (120)
Escherichia coli (72)
Thermus thermophilus HB8 (71)
Candida albicans (50)
Escherichia coli str. K-12 substr. MG1655 (47)
Gallus gallus (43)
Danio rerio (43)
Bos taurus (41)
Staphylococcus aureus (33)
Triticum aestivum (32)
Rhizobium leguminosarum (30)
Sus scrofa (26)
Pseudomonas putida (25)
Pseudomonas aeruginosa (23)
Zea mays (23)
Escherichia coli K-12 (21)
Taeniopygia guttata (19)
Streptococcus pneumoniae (19)
Sinorhizobium meliloti (19)
Hordeum vulgare (17)
Solanum tuberosum (17)
Bacillus subtilis (16)
Salmonella enterica subsp. enterica serovar Typhimurium (16)

Organisms

Homo sapiens (351)
Mus musculus (271)
Drosophila melanogaster (17)
Rattus norvegicus (16)
Saccharomyces cerevisiae (15)
Escherichia coli (8)
Bos taurus (7)
Oryza sativa (5)
Chlamydomonas reinhardtii (4)
Caenorhabditis elegans (4)
Danio rerio (4)
Arabidopsis thaliana (4)
Gallus gallus (4)
Apium graveolens (3)
Xenopus laevis (3)
Manihot esculenta (3)
Escherichia coli K-12 (3)
Zea mays (3)
Cupriavidus metallidurans CH34 (2)
Rangifer tarandus (2)
Phaeocystis globosa (2)
Synechocystis sp. PCC 6803 (2)
rabbit gut metagenome (2)
Neurospora crassa (2)
Shewanella oneidensis MR-1 (2)
Macaca mulatta (2)
Salmo salar (2)
Sorghum bicolor (2)
Hordeum vulgare subsp. vulgare (2)
Candida albicans (2)

Repository

biostudies-arrayexpress (7488)
pride (5339)
ENA (952)
MetaboLights (246)
geo (145)
MassIVE (55)
MetabolomicsWorkbench (46)
EGA (23)
NODE (23)
iProX (20)
jPOST (16)
dbGaP (6)
GNPS (6)
PeptideAtlas (2)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (1255)
Liver (158)
Blood plasma (142)
Lung (68)
Blood (31)
Unspecified (5)
Breast (4)
Cell line (4)
Prostate (3)
Cultured cells (2)
Decidua (2)
Plasma Non-glyco (2)
Cyst fluid (1)
Cells (1)
Intestine (1)
Keratinocytes (1)
Lung (1)
Tumor cells (1)
Bacterial cells (1)
Urine (1)
Hair (1)
In vitro (1)
Large intestine (1)
Marrow (1)
PBMC (1)
Pancreas (1)
Peripheral whole blood (1)
Prefrontal Cortex (1)
Prostate-lung (1)
Small intestine (1)

Disease

Breast cancer (114)
Normal (54)
Prostate cancer (6)
Rheumatoid arthritis (4)
Chronic lymphocytic leukemia (4)
Acute myeloid leukemia (4)
Neuroblastoma (4)
Cancer (3)
Reference (3)
Gastric cancer (3)
Adenocarcinoma (3)
Wilms tumour (3)
ACUTE MYELOID LEUKEMIA (2)
Hypertension (2)
Mitochondrial complex I deficiency (2)
Infiltrating ductal carcinoma (2)
Primary tumor (2)
Breast adenocarcinoma (2)
Porphyria NOS (2)
Colorectal cancer (2)
Osteosarcoma (2)
Squamous cell carcinoma (2)
Colon adenocarcinoma (2)
Not infected (2)
Benign prostatic hyperplasia (2)
Chronic myeloid leukemia (2)
Osteosarcoma (2)
Colorectal adenocarcinoma (2)
Cervical cancer (2)
Multiple sclerosis (1)

Technology Type

Mass Spectrometry (5385)
Shotgun proteomics (2633)
Affinity purification coupled with mass spectrometry proteomics (1157)
Bottom-up proteomics (936)
Data-dependent acquisition (622)
Gel-based experiment (452)
Data-independent acquisition (244)
Mass spectrometry (161)
SWATH MS (160)
Top-down proteomics (136)
Chemical cross-linking coupled with mass spectrometry proteomics (91)
Mass spectrometry assay (52)
SRM/MRM (52)
Affinity proteomics (44)
ESI (43)
HDMSE (39)
All-ion fragmentation (28)
NMR spectroscopy (25)
Immunopeptidomics (20)
MSE (14)
Mass spectrometry imaging (14)
DiaPASEF (12)
NMR spectroscopy assay (8)
Olink affinity proteomics (5)
RNA mass spectrometry (5)
EI (3)
Metaproteomics (3)
Proteogenomics (2)
SomaScan affinity proteomics (2)
Glycoproteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (277)
NextSeq 500 (245)
Illumina HiSeq 2000 (159)
Illumina HiSeq 2500 (150)
Illumina HiSeq 4000 (129)
NextSeq 550 (56)
Illumina MiSeq (47)
NextSeq 2000 (34)
Scanning hardware (29)
GenePix 4000B [Axon Instruments] (24)
Illumina NovaSeq X (24)
Illumina Genome Analyzer II (23)
Illumina HiSeq 1500 (20)
Illumina Genome Analyzer IIx (19)
Axon- GenePix4000B (19)
Axon GenePix 4000B scanning hardware (19)
GenePix 4000A [Axon Instruments] (14)
ScanArray 4000XL [PerkinElmer] (13)
Illumina HiSeq 3000 (13)
418 [Affymetrix] (9)
NextSeq 1000 (9)
Illumina HiSeq 1000 (9)
ScanArray 4000 [PerkinElmer] (8)
Other (8)
PromethION (7)
ArrayWoRx Biochip Reader [Applied Precision] (7)
G2565BA DNA microarray scanner [Agilent] (7)
NA (7)
DNBSEQ-G400 (7)
BGISEQ-500 (7)

Publication Date

2013 (1108)
2025 (1047)
2010 (940)
2022 (898)
2024 (873)
2023 (859)
2021 (744)
2014 (709)
2015 (707)
2011 (686)
2026 (616)
2012 (584)
2020 (572)
2016 (507)
2019 (499)
2008 (414)
2018 (400)
2009 (296)
2017 (273)
2007 (194)
2006 (147)
2005 (136)
2004 (70)
2003 (19)
2002 (2)
2027 (1)

UNIPROT ID/AC

A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WYL9 (2)
A0A087X130 (2)
A0A087X1V9 (2)
A0A0A0MS51 (2)
A2NUT2 (2)
B7Z556 (2)
B7Z9A0 (2)
B7ZKJ8 (2)
B9A064 (2)
C9JV77 (2)
D6RE86 (2)
E7ETB4 (2)
E7ETN3 (2)
E9PFZ2 (2)
F8W696 (2)
H7C5H1 (2)
H7C5R1 (2)
P00450 (2)
P00734 (2)
P00736 (2)
P00747 (2)
P00751 (2)
P01008 (2)
P01011 (2)
P01019 (2)
P01023 (2)
P01024 (2)
P01031 (2)

CHEBI ID

CHEBI:16737 (68)
CHEBI:30769 (63)
CHEBI:16919 (61)
CHEBI:15891 (59)
CHEBI:15428 (52)
CHEBI:17596 (52)
CHEBI:17368 (52)
CHEBI:16704 (49)
CHEBI:15354 (48)
CHEBI:32816 (46)
CHEBI:28300 (45)
CHEBI:17154 (45)
CHEBI:27266 (45)
CHEBI:28044 (44)
CHEBI:17568 (44)
CHEBI:17750 (44)
CHEBI:18186 (43)
CHEBI:25017 (42)
CHEBI:16335 (42)
CHEBI:27897 (41)
CHEBI:18132 (40)
CHEBI:25094 (40)
CHEBI:17268 (40)
CHEBI:17295 (40)
CHEBI:18237 (39)
CHEBI:7916 (39)
CHEBI:17562 (38)
CHEBI:16449 (38)
CHEBI:17895 (38)
CHEBI:18012 (37)

Metabolite Name

Creatinine (73)
Creatine (61)
EDTA (60)
Hypoxanthine (56)
Taurine (54)
Choline (48)
Betaine (45)
Adenosine (44)
Glutamine (44)
Glycine (43)
Inosine (43)
Cytidine (42)
Uridine (42)
Leucine (40)
Proline (40)
Ornithine (38)
Alanine (38)
Phenylalanine (38)
Xanthine (37)
Glycerophosphocholine (37)
L-Phenylalanine (37)
Uracil (36)
Tyrosine (36)
Valine (35)
Lysine (35)
Histamine (35)
Histidine (34)
L-Histidine (34)
Arginine (34)
Guanine (34)

First Public Date

2014 (146)
2025 (136)
2024 (128)
2023 (99)
2021 (76)
2026 (75)
2019 (64)
2022 (60)
2020 (47)
2018 (30)
2017 (26)
2015 (23)
2013 (22)
2016 (18)
2012 (2)

Classification

bacteria (22)
fungi (4)
protozoa (3)
viruses (2)

Modification

2x(15)N labeled L-lysine (14)
4x(15)N labeled L-arginine (11)
N6-dimethyl-L-lysine (8)
Not available (8)
4-tetrahydrothiazine-3-carboxylic acid (6)
N6 (5)
15.994915 (4)
4x(2)H labeled dimethylated residue (3)
-17.026549 (2)
15.99491 (2)
3x(2)H labeled N6-acetyl-L-lysine (2)
42.010565 (2)
57.02146 (2)
57.021464 (2)
58.005479 (2)
0.984016 (1)
4-dinitrophenyl modified residue (1)
47.036105 (1)
4x(2)H labeled dimethylated L-lysine (1)
56.026215 (1)
59.036279 (1)
6-dioxaoctanediamine derivatized cysteine (1)
6x(2)H labeled dimethylated L-arginine (1)

Study status

Withdrawn (2)
Recruiting (2)
Completed (2)

Study type

Transcription profiling by array (2989)
ChIP-seq (1147)
ChIP-chip by tiling array (845)
RNA-seq of coding RNA (711)
RNA-seq of coding RNA from single cells (209)
ChIP-chip by array (205)
Comparative genomic hybridization by array (189)
Other (168)
Methylation profiling by array (146)
DNA-seq (94)
Methylation profiling by high throughput sequencing (92)
RNA-seq of non coding RNA (81)
MicroRNA profiling by array (80)
Transcription profiling by tiling array (56)
RNA-seq of total RNA (45)
Unknown experiment type (42)
Cell line - High-throughput sequencing (38)
Genotyping by array (29)
High-throughput sequencing (25)
CUT&RUN (23)
RIP-seq (21)
Transcription profiling by RT-PCR (20)
Proteomic profiling by array (19)
Human - High-throughput sequencing (15)
ATAC-seq (14)
Hi-C (14)
Animal - High-throughput sequencing (13)
RNAi profiling by array (9)
MicroRNA profiling by high throughput sequencing (9)
Single nucleus RNA sequencing (8)

Release Date

2013 (1154)
2010 (963)
2014 (730)
2011 (715)
2015 (652)
2012 (627)
2016 (454)
2008 (443)
2022 (415)
2021 (394)
2023 (342)
2009 (318)
2025 (307)
2024 (293)
2020 (275)
2019 (248)
2018 (241)
2007 (203)
2017 (176)
2005 (149)
2006 (148)
2026 (141)
2004 (76)
2003 (29)
2001 (13)
1998 (10)
2002 (8)
2000 (7)
1999 (5)
1993 (1)

Lab affiliation

EDyP (40)
Head of the Curie Institute Mass Spectrometry Platform (26)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (20)
UCSF (17)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (14)
School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China (14)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (13)
University of Oxford (12)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (11)
School of Biological Sciences, Nanyang Technological University (11)
Institute of Molecular Biology (IMB), Mainz, Germany (10)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (10)
School of Biological Sciences, Nanyang Technological University, Singapore (10)
University of Bristol (10)
School of Life Sciences, University of Warwick (9)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (8)
Department Biochemistry of Plant Interactions, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany (8)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (8)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (8)
Proteomics facility, Central Science Laboratory, University of Tasmania (8)
University of Edinburgh (8)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (7)
Cornell University (7)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (7)
Indiana University School of Medicine (7)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (7)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (7)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA (7)
Molecular Genetics, RPTU Kaiserslautern (7)
USDA-ARS (7)

Location

Germany (2)
China (1)
Austria (1)
France (1)

Keyword

Poor vascular access (1)
Thromboembolism (1)
Intestinal NET (1)
Somatostatin analogues (1)
Tryptophan hydroxylase inhibitor (1)
Intestinal microbiota, microbial genes, oncology (1)
Minocycline (1)
Nonmetastatic childhood soft tissue sarcoma (1)
Mast cell leukemia (1)
Poor prognosis metastatic gestational trophoblastic tumor (1)
Childhood grade III lymphomatoid granulomatosis (1)
Next generation sequencing (1)
Surveillance strategies (1)
Recurrent childhood grade III lymphomatoid granulomatosis (1)
Atypical chronic myeloid leukemia, BCR-ABL negative (1)
Juvenile myelomonocytic leukemia (1)
Heparin (1)
Previously untreated childhood rhabdomyosarcoma (1)
Stage I childhood small noncleaved cell lymphoma (1)
Stage I childhood large cell lymphoma (1)
Stage II childhood small noncleaved cell lymphoma (1)
Stage II childhood large cell lymphoma (1)
Stage III childhood small noncleaved cell lymphoma (1)
Stage III childhood large cell lymphoma (1)
Stage IV childhood small noncleaved cell lymphoma (1)
Stage IV childhood large cell lymphoma (1)
Recurrent childhood small noncleaved cell lymphoma (1)
Recurrent childhood large cell lymphoma (1)
Childhood chronic myelogenous leukemia (1)
Recurrent childhood acute lymphoblastic leukemia (1)

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New primary renal diagnosis codes for the ERA-EDTA.

Not available

S-EPMC3520087 | biostudies-literature

The association of living donor source with patient and graft survival among kidney transplant recipients in the ERA-EDTA Registry - a retrospective study.

Not available

S-EPMC7821376 | biostudies-literature

Expression data from peripheral blood - blood draws at Pre and Post time points of Allergen inhalation challenge (PAX.NGR and EDTA)

To determine differential gene expression in peripheral blood of asthmatic individuals undergoing allergen inhalation challenge, post-challenge compared to pre-challenge Blood was collected immediately prior to, and two hours after challenge The 8 PAXgene non-globin reduced (PAX.NGR) samples were co...

ORGANISM(S): Homo sapiens

2012-01-26 | E-GEOD-34160 | biostudies-arrayexpress

Effect of refrigeration storage duration of Blood EDTA samples

PRJNA1026626 | ENA

Eicosanoid measurements from EDTA plasma from 1500 people

Eicosanoid measurement from EDTA plasma from 1500 people. Collected in negative ion mode.

ORGANISM(S): Homo Sapiens

2018-08-25 | MSV000082852 | MassIVE

Response of efflux system deletion mutants of Cupriavidus metallidurans to Zn and EDTA

PRJNA753479 | ENA

Chronic kidney disease is a key risk factor for severe COVID-19: a call to action by the ERA-EDTA.

Not available

S-EPMC7771976 | biostudies-literature

Towards clinical applications of blood-born miRNA signatures: The influence of the anticoagulant EDTA on miRNA abundance

Circulating microRNAs (miRNAs) from blood are increasingly recognized as biomarker candidates for human diseases. Clinical routine settings frequently include blood sampling in tubes with EDTA as anticoagulant without considering the influence of phlebotomy on the overall miRNA expression pattern. W...

ORGANISM(S): Homo sapiens

2015-12-31 | E-GEOD-73401 | biostudies-arrayexpress

Hemodialysis vascular access and subsequent transplantation: a report from the ESPN/ERA-EDTA Registry.

Not available

S-EPMC6394682 | biostudies-literature

Disodium EDTA Parma

PRJNA1117376 | ENA

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16427 Results

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