Eec - OmicsDI

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Unknown (384)
Genomics (126)
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Mus musculus (68)
Homo sapiens (60)
Aerococcus urinae NBRC 15544 = CCUG 36881 (9)
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Ectopseudomonas oleovorans CECT 5344 (9)
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synthetic construct (1)

Organisms

Homo sapiens (45)
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ear metagenome (1)
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Repository

ENA (102)
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pride (9)
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Tissue

Cell culture (2)
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Uterine endometrial cancer cell (1)

Disease

Normal (3)
Alzheimer's disease (2)
Endometrioid carcinoma (1)
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Endometrial Endometrioid Adenocarcinoma (1)

Technology Type

Mass Spectrometry (9)
Shotgun proteomics (8)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (2)
450K (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Illumina HiSeq 4000 (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Illumina HiSeq 2500 (2)
UPLC-LTQ-MS (2)
Zymo Research (1)
PAXgene tubes (1)
Chromium Next GEM Chip G (1)
10X v3 (1)
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PC (1)
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Q Exactive HF (1)
Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2009 (17)
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2010 (7)
2020 (7)
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2007 (2)

CHEBI ID

CHEBI:140071 (2)
CHEBI:348530 (2)
CHEBI:140197 (1)
CHEBI:140231 (1)
CHEBI:140230 (1)
CHEBI:140216 (1)
CHEBI:140209 (1)
CHEBI:140206 (1)
CHEBI:140201 (1)
CHEBI:21949 (1)
CHEBI:72689 (1)
CHEBI:73067 (1)
CHEBI:70749 (1)
CHEBI:57589 (1)
CHEBI:17368 (1)

Metabolite Name

Thiouracil (2)
3-thioureidopropionic acid (2)
2-methylthiouracil (1)
3-[(2-amino-3-sulfanylpropanoyl)amino]-4-(carboxymethylamino)-4-oxobutanoic acid (1)
N-({2-[(ethylsulfonyl)amino]ethyl}sulfonyl)-L-alanine (1)
3-(1,1-dioxo-3-thiolanyl)-5-methyl-2-thioxo-4-imidazolidinone (1)
2H-tetrazol-2-ium-5-carboxamide (1)
6-(2-hydroxyethyl)-2-sulfanylidene-1H-pyrimidin-4-one (1)
2-sulfanyl-2,3-dihydro-1H-pyrimidin-4-one (1)
Soyasaponin Bb (1)
PGP(18:0/TXB2) (1)
PGP(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/5-iso PGF2VI) (1)
PI(PGJ2/20:1(11Z)) (1)
PGP(22:4(7Z,10Z,13Z,16Z)/20:4(5Z,8Z,11Z,14Z)-OH(16R)) (1)
PIP(20:3(5Z,8Z,11Z)/16:0) (1)
PI(16:1(9Z)/6 keto-PGF1alpha) (1)
PGP(5-iso PGF2VI/20:3(5Z,8Z,11Z)) (1)
PGP(20:4(8Z,11Z,14Z,17Z)/20:4(5Z,8Z,11Z,14Z)-OH(16R)) (1)
PI(PGJ2/18:2(9Z,12Z)) (1)
PI(PGJ2/18:3(6Z,9Z,12Z)) (1)
PGP(18:1(11Z)/20:4(5Z,8Z,11Z,14Z)-OH(16R)) (1)
PG(22:4(7Z,10Z,13Z,16Z)/19:1(9Z)) (1)
PI(17:0/17:0) (1)
Ginsenoside Rg5 (1)
PG(20:0/18:0) (1)
SM(d18:1/22:6(4Z,7Z,11E,13Z,15E,19Z)-2OH(10S,17)) (1)
PG(i-19:0/18:2(10E,12Z)+=O(9)) (1)
PI-Cer(t20:0/14:0) (1)
PG(i-15:0/22:6(5Z,7Z,10Z,13Z,16Z,19Z)-OH(4)) (1)
Alpha-Hederin (1)

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2021 (8)
2020 (7)
2014 (7)
2018 (6)
2019 (2)
2015 (2)
2013 (2)
2017 (1)

Classification

bacteria (6)

Study type

Transcription profiling by array (58)
RNA-seq of coding RNA (5)
ChIP-seq (3)
RNA-seq of coding RNA from single cells (2)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

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2022 (43)
2020 (41)
2021 (40)
2024 (35)
2019 (33)
2018 (23)
2017 (20)
2016 (20)
2015 (19)
2009 (19)
2014 (18)
2012 (12)
2026 (10)
2011 (7)
2010 (7)
2008 (6)
2013 (5)
2007 (1)
2001 (1)
2000 (1)

Lab affiliation

Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Clinical Neuroproteomics Group, Navarrabiomed (Spain) (1)
Department of Gynecological Oncology, Tongji Hospital, Tongji Medical College,Huazhong University of Science and Technology (1)
Department of Innovative Technologies in Medicine & Dentistry, University of Chieti, Italy (1)
Lehrstuhl für Neuroproteomik, Technische Universität München und Neuroproteomik, Deutsches Zentrum für Neurodegenerative Erkrankungen, München (1)
Prof. Dr. Martin von Bergen Helmholtz Centre for Environmental Research - UFZ Head of Department for Molecular Systems Biology http://www.ufz.de/index.php?de=17634 Professor of Functional Proteomics Faculty of Life Sciences, Pharmacy and Psychology University of Leipzig Permoserstr. 15 04318 Leipzig GERMANY (1)
Sir William Dunn School of Pathology, University of Oxford (1)
Sir William Dunn School of Pathology, University of Oxford,Oxford, UK (1)

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Escherichia coli strain:EEC-124

Escherichia coli strain:EEC-124 Genome sequencing

PRJNA1255164 | ENA

Escherichia coli strain:EEC-144

Escherichia coli strain:EEC-144 Genome sequencing

PRJNA1255426 | ENA

Escherichia coli strain:EEC-219

Escherichia coli strain:EEC-219 Genome sequencing and assembly

PRJNA1168037 | ENA

Escherichia coli strain:EEC-121

Escherichia coli strain:EEC-121 Genome sequencing and assembly

PRJNA1168691 | ENA

Seminal plasma induces global transcriptomic changes associated with cell migration, proliferation and viability in endometrial epithelial cells and stromal fibroblasts.

Exposure of eEC and eSF to SP in vitro increases expression of genes and secreted proteins associated with cellular migration, proliferation, viability and inhibition of cell death. This is a cross sectional study involving control samples versus treatment. SP (pooled from twenty donors) was first t...

ORGANISM(S): Homo sapiens

2014-05-07 | E-GEOD-57356 | biostudies-arrayexpress

Escherichia coli strain:EEC-113

Escherichia coli strain:EEC-113 Genome sequencing

PRJNA1255762 | ENA

Transcriptomic analysis of stage I endometrioid endometrial carcinoma (EEC)

PRJNA938100 | ENA

microRNA expression profile in endometrioid endometrial carcinoma (EEC)

The aim of the presented study was to define tissue and plasma miRNA signatures, which could potentially serve as diagnostic and prognostic markers in endometrioid endometrial cancer (EEC), and to investigate miRNA profiles in regard to clinicopathological characteristics of the tumors. Results: qP...

ORGANISM(S): Homo sapiens

2012-05-31 | E-GEOD-35794 | biostudies-arrayexpress

The ENCCA-WP7/EuroSarc/EEC/PROVABES/EURAMOS 3rd European Bone Sarcoma Networking Meeting/Joint Workshop of EU Bone Sarcoma Translational Research Networks; Vienna, Austria, September 24-25, 2015. Workshop Report.

Not available

S-EPMC4794847 | biostudies-literature

Differentially Expressed Genes in EEC and LMS Syndromes.

Not available

S-EPMC4468125 | biostudies-literature

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