Egd - OmicsDI

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Unknown (319)
Genomics (103)
Transcriptomics (80)
Proteomics (28)
Clinical (2)
Other (2)
Genomic (1)

Organisms

Listeria monocytogenes EGD-e (46)
Listeria monocytogenes (33)
Homo sapiens (8)
Mus musculus (6)
Listeria monocytogenes EGD (4)
Listeria monocytogenes serotype 4b str. H7858 (3)
Listeria monocytogenes serotype 1/2a str. F6854 (3)
Listeria monocytogenes serotype 4b str. F2365 (3)
Galleria mellonella (1)
Listeria monocytogenes J2818 (1)
Listeria monocytogenes FSL R2-503 (1)
Listeria monocytogenes FSL J1-175 (1)
Listeria monocytogenes F6900 (1)
Listeria monocytogenes FSL N1-017 (1)
Listeria monocytogenes FSL J2-064 (1)
Listeria monocytogenes FSL J2-003 (1)
Listeria monocytogenes FSL J1-194 (1)
Listeria monocytogenes FSL F2-208 (1)
Listeria monocytogenes HPB2262 (1)
Listeria monocytogenes FSL J2-071 (1)
Listeria monocytogenes FSL F2-515 (1)
Listeria monocytogenes FSL N3-165 (1)
Listeria monocytogenes FSL J1-208 (1)
Listeria monocytogenes J0161 (1)
Listeria innocua Clip11262 (1)
Listeria monocytogenes LO28 (1)
Listeria monocytogenes 10403S (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
synthetic construct (1)

Organisms

Listeria monocytogenes EGD-e (29)
Listeria monocytogenes (8)
Homo sapiens (6)
Pseudomonas sp. EGD-AKN5 (4)
Listeria monocytogenes EGD (3)
Bacillus cereus (2)
Mus musculus (2)
Escherichia phage EGD-2014 (1)
Ochrobactrum sp. EGD-AQ16 (1)
Bacillus amyloliquefaciens EGD-AQ14 (1)
Pseudogulbenkiania ferrooxidans EGD-HP2 (1)
Bacillus sp. EGD-AK10 (1)
Alcaligenes sp. EGD-AK7 (1)
Pseudomonas sp. EGD-AK9 (1)
Lactiplantibacillus plantarum EGD-AQ4 (1)
Acinetobacter baumannii EGD-HP18 (1)
Pantoea dispersa EGD-AAK13 (1)
Serratia marcescens EGD-HP20 (1)
Staphylococcus sp. EGD-HP3 (1)
Enterobacter sp. EGD-HP1 (1)
Enterococcus gallinarum EGD-AAK12 (1)
Klebsiella pneumoniae EGD-HP19-C (1)
Ectopseudomonas chengduensis (1)
Morganella sp. EGD-HP17 (1)
Listeria monocytogenes N53-1 (1)
Listeria monocytogenes La111 (1)
Pseudomonas simiae (1)
Serratia marcescens (1)
Pseudomonas aeruginosa (1)
Klebsiella pneumoniae (1)

Repository

ENA (100)
biostudies-arrayexpress (50)
geo (36)
pride (24)
dbGaP (1)
EVA (1)
iProX (1)
MassIVE (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Intestinal epithelial cell (2)
Prokaryotic cell (2)
Colon (2)
Cell culture (2)
Splenocyte (1)
Macrophage (1)
Spleen (1)
Hepatocyte (1)
Epithelial cell (1)
Liver (1)

Disease

Listeriosis (2)
Diseases of the digestive system (1)
Colorectal Neoplasms (1)
Cervix carcinoma (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (24)
Shotgun proteomics (17)
Bottom-up proteomics (3)
Data-independent acquisition (2)
Data-dependent acquisition (2)
Mass spectrometry imaging (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Generation III Array Scanner [Amersham] (5)
Illumina NovaSeq 6000 (2)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Illumina MiSeq (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
ThermoFinnigan LCQ Classic (1)

Publication Date

2010 (16)
2014 (12)
2013 (12)
2008 (11)
2019 (8)
2021 (8)
2012 (6)
2009 (6)
2018 (5)
2023 (4)
2022 (4)
2015 (4)
2024 (4)
2011 (3)
2025 (3)
2017 (2)
2016 (2)
2020 (2)
2007 (1)
2026 (1)

UNIPROT ID/AC

CATA_LISMO (1)
Q8Y647_LISMO (1)
Q8YA01_LISMO (1)
MCSB_LISMO (1)
CSPB_LISMO (1)
Q92EC0_LISMO (1)
HEMH_LISMO (1)
Q92CE7_LISMO (1)
RS16_LISMO (1)
RS21_LISMO (1)
Q92DV7_LISMO (1)
PFKA_LISMO (1)
G6PI_LISMO (1)
Q7AP49_LISMO (1)
Q8Y6Y8_LISMO (1)
Q8Y4I0_LISMO (1)
GLPK_LISMO (1)
Q8YA98_LISMO (1)
RS20_LISMO (1)
Q8Y6J3_LISMO (1)
RL31B_LISMO (1)
Q8Y9G8_LISMO (1)
Q8Y7A1_LISMO (1)
Q8Y3W4_LISMO (1)
Q8Y4S2_LISMO (1)
Q8Y7E8_LISMO (1)
Q8Y8P9_LISMO (1)
Q8Y919_LISMO (1)
KPRS1_LISMO (1)
Q92BP2_LISMO (1)

First Public Date

2014 (23)
2013 (21)
2023 (7)
2024 (6)
2019 (6)
2018 (6)
2026 (5)
2022 (5)
2016 (5)
2015 (5)
2025 (4)
2021 (3)
2012 (2)
2020 (1)
2017 (1)

Classification

bacteria (55)
viruses (1)

Modification

27.994915 (1)
45.029395 (1)
42.010565 (1)
15.994915 (1)
57.021464 (1)
+3amu) (1)
Not available (1)

Study status

Not yet recruiting (2)

Study type

Transcription profiling by array (34)
RNA-seq of coding RNA (5)
Transcription profiling by tiling array (2)
One-color microarray (1)
High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RIP-seq (1)
Other (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)
Observational (1)
Interventional (1)

Release Date

2022 (44)
2025 (39)
2023 (38)
2024 (38)
2021 (33)
2020 (24)
2014 (19)
2010 (16)
2019 (14)
2013 (13)
2018 (12)
2017 (11)
2012 (11)
2016 (10)
2008 (10)
2015 (7)
2026 (7)
2011 (4)
2009 (4)
2007 (3)
2006 (3)
2003 (2)
2001 (2)
1999 (2)
2004 (1)
2002 (1)
2000 (1)

Lab affiliation

Wageningen University (5)
Université Clermont Auvergne, INRA, UMR MEDiS, F-63122 Saint-Genès Champanelle, France. INRA, Plateforme d’Exploration du Métabolisme, composante protéomique (PFEMcp), F-63122 Saint-Genès Champanelle, France (1)
CERELA-CONICET (1)
Institut Pasteur Unité des Interactions Bactéries-Cellules, Inserm U604, INRA USC2020 25 rue du Dr. Roux 75015 Paris France (1)
Technical University of Munich, Germany; TUM School of Natural Sciences, Department of Bioscience; Center for Functional Protein Assemblies (CPA) (1)
Department of Chemistry, Chair of Organic Chemistry II, Center for Functional Protein Assemblies (CPA), Technical University of Munich, Ernst-Otto-Fischer Straße 8, 85748 Garching, Germany (1)
VIB-UGent Center for Medical Biotechnology (1)
Université Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, Jouy-en-Josas, France (1)
Max Planck Unit for the Science of Pathogens, Chariteplatz 1, 10117 Berlin, Germany (1)
Biological Sciences (1)
Micalis, Institut National de la Reherche Agronomique (1)
Ghent University, Faculty of Medicine and Health Sciences, Deparment of Biomolecular Medicine (1)
Institute of Cancer Research (1)
VIB Proteomics Core VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine (1)
VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium. Department of Biomolecular Medicine, Ghent University, Ghent, Belgium. VIB Proteomics Core, VIB, Ghent, Belgium. (1)
VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium; Department of Biomolecular Medicine, Ghent University, Ghent, Belgium. (1)
Laboratory of Food Quality and Hygiene, Department of Food Science and Human Nutrition, Agricultural University of Athens, 118 55 Athens Greece (1)
Biological Sciences Dept, Mississippi State University, Mississippi State, 39762 (1)
Institute of Cancer Research, London (1)
The Institute of Cancer Research (1)

Location

South Korea (1)

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Transcription profiling of Listeria monocytogenes EGD wild type, Listeria monocytogenes EGD-e wild-type and EGD-e PrfA*, all grown in BHI at 37C

Comparison of Listeria monocytogenes transcripts in different strains (EGD wild-type versus EGD-e wild-type, EGD-e PrfA* versus EGD-e wild-type).

ORGANISM(S): Listeria monocytogenes EGD

2013-08-01 | E-MTAB-1677 | biostudies-arrayexpress

Transcription profiling of Listeria monocytogenes EGD wild type, Listeria monocytogenes EGD-e wild-type and EGD-e PrfA*, all grown in BHI at 37C

Comparison of Listeria monocytogenes transcripts in different strains (EGD wild-type versus EGD-e wild-type, EGD-e PrfA* versus EGD-e wild-type).

ORGANISM(S): Listeria monocytogenes EGD-e

2013-08-01 | E-MTAB-1676 | biostudies-arrayexpress

Listeria monocytogenes EGD and EGD-e

Transcriptional profile after growth in MM (minimal medium (Premaratne et al. 2001) supplemented with 50 mM Glucose. Note: strain "EGD" has not been deposited at ATCC/NCTC. It is a derivative of the original Murray strain (Murray et al. 1926), obtained from S.H.E. Kaufmann. Strain "E...

ORGANISM(S): Listeria monocytogenes

2008-11-30 | E-GEOD-12146 | biostudies-arrayexpress

EGD sequence

Widely used Listeria monocytogenes strains EGD, 10403S and EGD-e are genetically and phenotypically different.

PRJEB4153 | ENA

Pseudomonas sp. EGD-AKN5

Pseudomonas sp. EGD-AKN5 Genome sequencing

PRJNA260773 | ENA

Listeria monocytogenes EGD-e

Listeria monocytogenes EGD-e Raw sequence reads

PRJNA818619 | ENA

Listeria monocytogenes EGD-e