Electron microscopy

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Organisms

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Mus musculus castaneus (1)

Organisms

Homo sapiens (194)
Mus musculus (165)
Rattus norvegicus (24)
Escherichia coli (14)
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Staphylococcus aureus (10)
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activated sludge metagenome (6)
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Euglena gracilis (2)
Pedobacter silvilitoris (2)
Aliivibrio salmonicida LFI1238 (2)
Leishmania donovani (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Anas platyrhynchos (2)
Streptococcus pneumoniae (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Ralstonia pseudosolanacearum (2)
Salmo salar (2)
Saccharomyces cerevisiae BY4741 (2)
Listeria monocytogenes (2)

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pride (523)
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Tissue

Cell culture (79)
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Bartter disease type 3 (1)
Colorectal carcinoma (1)
Endometritis (1)
Intracerebral hemorrhage (1)

Technology Type

Mass Spectrometry (523)
Shotgun proteomics (208)
Bottom-up proteomics (144)
Data-dependent acquisition (93)
Chemical cross-linking coupled with mass spectrometry proteomics (55)
Data-independent acquisition (39)
Mass spectrometry (34)
Gel-based experiment (26)
Affinity purification coupled with mass spectrometry proteomics (23)
Mass spectrometry assay (22)
HDMSE (16)
SWATH MS (15)
MSE (12)
Top-down proteomics (10)
Illumina HiSeq 2000 (7)
NMR spectroscopy (4)
All-ion fragmentation (3)
DiaPASEF (3)
Illumina HiSeq 2500, ILLUMINA (2)
Illumina HiSeq 2500 (2)
Affinity proteomics (2)
HiSeq X Five, ILLUMINA (1)
Illumina MiSeq, ILLUMINA (1)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina HiSeq 2500 (ILLUMINA) (1)
NextSeq 500, Illumina HiSeq 2500, AB 5500xl Genetic Analyzer, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Illumina MiSeq (1)
Metaproteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (35)
NextSeq 500 (18)
Illumina HiSeq 4000 (9)
Illumina NovaSeq X (7)
Illumina HiSeq 2500 (4)
GenePix 4000B [Axon Instruments] (3)
NA (3)
NextSeq 2000 (3)
10x Genomics Chromium Controller (2)
DNBSEQ-G400 (2)
Illumina HiSeq 2000 (2)
Chromium X instrument (10x Genomics); GEM-X FX Chips (10x Genomics); Agilent TapeStation D1000; qPCR (library quantification kit for Illumina platforms) (1)
Chromium X instrument (10x Genomics); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781); Human Gene Expression Probe Set v1.0.1 (10x Genomics) (1)
Countess 3 FL Automated Cell Counter (Thermo Fisher Scientific; AMQAF2000); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781) (1)
TruSeq Stranded Total RNA kit (Illumina) (1)
FACSAria III (BD Sciences) (1)
Chromium Controller with Chromium Next GEM Single Cell 5’ and V(D)J (kits v1.1) (1)
RiboErase Roche (1)
Qiagen RNaesy kit (1)
NextSeq 500, 75 bp single end lane (1)
BD Rhapsody Express Instrument (1)
Linux Bash Scripting (1)
NEBNext Ultra II Directional RNA Library Prep (1)
Qiagen RNeasy Mini Kit (1)
With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
IEO HPC (1)
HPC (1)
Maxwell 16 LEV-plant RNA kit (1)
Sequel II (1)
Genomics Core Shared Resources at Augusta University (RRID: SCR_026483) (1)

Publication Date

2025 (277)
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2023 (147)
2022 (147)
2021 (92)
2020 (67)
2019 (58)
2012 (56)
2014 (50)
2011 (48)
2016 (45)
2013 (40)
2018 (37)
2015 (35)
2010 (35)
2017 (34)
2009 (26)
2008 (26)
2007 (11)
2006 (11)
2005 (4)
2004 (2)

UNIPROT ID/AC

Q9LES0_ARATH (1)
B561M_ARATH (1)
AB33G_ARATH (1)
Q9CAS2_ARATH (1)
RLF32_ARATH (1)
JAL2_ARATH (1)
IGMT3_ARATH (1)
SCP14_ARATH (1)
PMEI9_ARATH (1)
TGA1_ARATH (1)
Q9SD52_ARATH (1)
RH48_ARATH (1)
GATA6_ARATH (1)
PLCD9_ARATH (1)
Q8GYY9_ARATH (1)
B3H6Z2_ARATH (1)
XTH18_ARATH (1)
SOT9_ARATH (1)
MIF1_ARATH (1)
XTH15_ARATH (1)
GUX5_ARATH (1)
G7IDE5_MEDTR (1)
A0A072VQN0_MEDTR (1)
G7JP51_MEDTR (1)
G7K0T1_MEDTR (1)
G7II48_MEDTR (1)
G7I9Z6_MEDTR (1)
G7JJ95_MEDTR (1)
G7JIX5_MEDTR (1)
3880.AES67516 (1)

ENSEMBL ID

ENSG00000170477 (4)
ENSG00000247315 (2)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16335 (9)
CHEBI:16919 (9)
CHEBI:30769 (9)
CHEBI:28044 (8)
CHEBI:17822 (7)
CHEBI:18132 (7)
CHEBI:25094 (7)
CHEBI:17268 (7)
CHEBI:15891 (7)
CHEBI:17895 (7)
CHEBI:22653 (6)
CHEBI:18186 (6)
CHEBI:26986 (6)
CHEBI:18257 (6)
CHEBI:24898 (6)
CHEBI:27266 (6)
CHEBI:7916 (6)
CHEBI:16449 (6)
CHEBI:29016 (6)
CHEBI:16015 (6)
CHEBI:18012 (6)
CHEBI:27897 (6)
CHEBI:15354 (6)
CHEBI:17295 (6)
CHEBI:18089 (6)
CHEBI:17768 (5)
CHEBI:17992 (5)
CHEBI:17858 (5)
CHEBI:16856 (5)
CHEBI:18237 (5)

Metabolite Name

Adenosine (9)
Uracil (8)
Creatine (8)
L-Tyrosine (8)
Pantothenic acid (7)
L-Histidine (7)
Cytosine (7)
Phenylalanine (7)
Palmitic acid (7)
L-Phenylalanine (7)
Inosine (7)
Hypoxanthine (7)
Histidine (6)
Leucine (6)
L-Lysine (6)
Palmitoleic acid (6)
Choline (6)
Fumaric acid (6)
4-Hydroxybenzaldehyde (6)
Asparagine (6)
L-Glutamine (6)
Hexadecanedioic acid (6)
Adenine (6)
Alpha-Linolenic acid (5)
Glycine (5)
Cyclohexylamine (5)
Trigonelline (5)
Valine (5)
N6-Acetyl-L-lysine (5)
L-Proline (5)

First Public Date

2025 (199)
2026 (177)
2024 (111)
2023 (90)
2014 (83)
2022 (65)
2021 (57)
2020 (50)
2019 (38)
2018 (28)
2017 (18)
2016 (17)
2015 (14)
2013 (11)

Modelling Approach

Constraint-based model (2)

Study status

Recruiting (1)

Lab affiliation

iBET – Instituto de Biologia Experimental e Tecnológica, Av. da República, Oeiras, 2780-157, Portugal (14)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (10)
Protein Biogenesis Lab, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (4)
Human Technopole, 20157, Milan, Italy (3)
1VIB-UGent Center for Medical Biotechnology, VIB, 9052 Ghent, Belgium 2Department of Biomolecular Medicine, Ghent University, 9052 Ghent, Belgium (3)
NovAliX, Department of Biophysics, 16 Rue d’Ankara, 67000, Strasbourg, France; orcid.org/0000-0001-6229-4524 (3)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (3)
Functional Proteomics, ICR (3)
King's College London, Chemistry Department, 7 Trinity Street, London, SE1 1DB, UK (2)
Institute of Biological Chemistry, Academia Sinica, Taipei, 115201, Taiwan Institute of Biochemical Sciences, National Taiwan University, Taipei, 106319, Taiwan International Institute for Sustainability with Knotted Chiral Meta Matter (SKCM2), Hiroshima University, Hiroshima, 739-8511, Japan (2)
Transcription and Disease Laboratory, Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, Karnataka, India (2)
Cellular Neurophysiology, Center for Integrative Physiology and Molecular Medicine (CIPMM), Saarland University, 66421 Homburg, Germany (2)
Department of Biochemistry Biophysics and Structural Biology, Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, St. Louis, Missouri, United States (2)
Systems Arbovirology, Leibniz Institute of Virology, Hamburg, Germany (2)
The Rockefeller University (2)
University of Modena and Reggio Emilia (2)
University Medical Center Goettingen, Department of Clinical Chemistry, Core Facility Proteomics (2)
Max-Delbrueck-Centre for Molecular Medicine (MDC), Berlin, Germany. (2)
The Francis Crick Institute (2)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (2)
EDyP (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute of Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic (2)
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China (2)
Head Department of Mass spectrometry of BioMacromolecules, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098XH, Amsterdam, The Netherlands. (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. Wellcome Center for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom. (1)
Associate Professor, Department of Chemistry Associate Professor, Thomas C. Jenkins Department of Biophysics Associate Professor, Department of Biology (1)
MRC Toxicology Unit, University of Cambridge, Hodgkin Building, Lancaster Road, Leicester, LE1 9HN, UK (1)

IsPrivate

False (2)

Classification

bacteria (65)
viruses (11)
fungi (4)
protozoa (4)
helminths (1)

Modification

4 (1)

Study type

Transcription profiling by array (210)
RNA-seq of coding RNA (55)
RNA-seq of coding RNA from single cells (19)
ChIP-seq (16)
Comparative genomic hybridization by array (6)
RNA-seq of non coding RNA (6)
Unknown experiment type (4)
Other (4)
Methylation profiling by array (4)
RNA-seq of total RNA (4)
Transcription profiling by SAGE (3)
CUT&RUN (3)
Transcription profiling by tiling array (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by high throughput sequencing (2)
ATAC-seq (2)
RIP-seq (2)
ScATAC-seq (2)
MicroRNA profiling by array (2)
RAN-seq of total RNA from single cells (1)
Human - Single-cell sequencing (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
DNA-seq (1)
Observational (1)

Release Date

2022 (5075)
2025 (4928)
2023 (4731)
2021 (4267)
2024 (4177)
2020 (3833)
2019 (3068)
2018 (2641)
2017 (2031)
2016 (1643)
2015 (1434)
2014 (1148)
2013 (814)
2026 (778)
2012 (658)
2011 (583)
2010 (465)
2009 (398)
2008 (299)
2007 (206)
2006 (165)
2005 (133)
2004 (110)
2003 (86)
2002 (85)
2001 (71)
2000 (52)
1999 (46)
1998 (33)
1997 (5)

Location

Japan (1)

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Co-occurrence of direct and indirect extracellular electron transfer mechanisms during electroactive respiration in a dissimilatory sulfate reducing bacterium

Understanding the extracellular electron transfer mechanisms of electroactive bacteria could help determine their potential in microbial fuel cells (MFCs) and their microbial syntrophy with redox-active minerals in natural environments. However, the mechanisms of extracellular electron transfer t...

2024-12-06 | MTBLS11447 | MetaboLights

Spatial Transcriptomics correlated Electron Microscopy [MERFISH]

PRJNA836863 | ENA

Spatial Transcriptomics correlated Electron Microscopy [scRNA-Seq]

PRJNA836864 | ENA

Spatial Transcriptomics correlated Electron Microscopy

PRJNA836860 | ENA

Primary ciliary dyskinesia without obvious electron microscopy defects

PRJNA635176 | ENA

Primary ciliary dyskinesia without obvious electron microscopy defects

PRJNA635175 | ENA

Preservation of protein fluorescence in embedded human dendritic cells for targeted 3D light and electron microscopy.

Not available

S-EPMC4757415 | biostudies-literature

Spatial Transcriptomics correlated Electron Microscopy [scRNA-Seq]

Current spatial transcriptomics methods identify cell types and states in a spatial context but lack morphological information. Electron microscopy, in contrast, provides structural details at nanometer resolution without decoding the diverse cellular states and identity. STEM address this limitatio...

ORGANISM(S): Mus musculus

2023-06-21 | GSE202636 | GEO

Diagnostic electron microscopy in human infectious diseases - Methods and applications.

Not available

S-EPMC12352021 | biostudies-literature

Volume electron microscopy.

Not available

S-EPMC7614724 | biostudies-literature

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46448 Results

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