Ellis L L - OmicsDI

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Unknown (1891)
Proteomics (144)
Transcriptomics (132)
Genomics (37)
Metabolomics (16)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (207)
Mus musculus (35)
Arabidopsis thaliana (12)
Zea mays (3)
Trypanosoma brucei (3)
Rattus norvegicus (2)
Sus scrofa (2)
Drosophila melanogaster (2)
Lathyrus oleraceus (2)
Puccinia graminis f. sp. tritici (1)
Tursiops truncatus (1)
Populus deltoides (1)
Populus trichocarpa x Populus deltoides (1)
Pan troglodytes (1)
Xenopus tropicalis (1)
Populus tremula x Populus tremuloides (1)
Medicago truncatula (1)
Lotus japonicus (1)
Schizosaccharomyces pombe (1)
Nicotiana tabacum (1)
Bacillus subtilis (1)
Salmo salar (1)
Triticum aestivum (1)
Canis lupus familiaris (1)
Pseudomonas aeruginosa (1)
Gallus gallus (1)
Danio rerio (1)
Rattus rattus (1)
Euglena gracilis (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Organisms

Mus musculus (3)
Vigna radiata (1)

Repository

biostudies-arrayexpress (137)
PeptideAtlas (96)
EGA (29)
pride (26)
MassIVE (21)
MetaboLights (15)
ENA (5)
dbGaP (1)
GNPS (1)
iProX (1)

Tissue

Digestive System (95)
Epithelial cell (6)
Breast cancer cell (2)
Cell culture (2)
Permanent cell line cell (2)
Prostate gland (2)
Seed (2)
Testis (2)
Female Reproductive System (1)
Adipose tissue (1)
Astrocyte (1)
Blood (1)
Blood cancer cell (1)
Blood plasma (1)
Blood platelet (1)
Bone cancer cell line (1)
Brain (1)
Brain cancer cell line (1)
Breast cancer cell line (1)
Cecum cancer cell line (1)
Cervical cancer cell line (1)
Colonic cancer cell (1)
Colorectal cancer cell line (1)
Endothelial cell of umbilical vein (1)
Extracellular vesicle (1)
Fat cell (1)
HeLa cell (1)
Kidney cancer cell (1)
Liver cancer cell (1)
Lung (1)

Disease

Prostate cancer (5)
Breast cancer (4)
Prostate adenocarcinoma (4)
Chronic myeloid leukemia (3)
Cryptozoospermia (1)
Pseudorabies virus infected (1)
Teratozoospermia and infertility (1)
These mice have a relatively normal first wave of spermatogenesis but never become fertile. Older animals show increased apoptosis of germ cells, increasing in severity as germ cell stage advances. (1)
Osteosarcoma (1)
None (1)
Normal (1)
Cervix carcinoma (1)
Chagas disease (1)
Colon cancer (1)
Coronary artery disease (1)
Disease free (1)
Glioblastoma (1)
Malignant neoplasm of ovary (1)
Rett syndrome (1)
Type 1 diabetes mellitus (1)

Technology Type

Mass Spectrometry (26)
Shotgun proteomics (14)
Mass spectrometry (12)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (4)
Illumina HiSeq 2000 (3)
NMR spectroscopy (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (108)
Q Exactive (9)
Scanning hardware (3)
LTQ Orbitrap Elite (3)
Illumina BeadArray reader (2)
ScanArray [PerkinElmer] (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
LTQ Orbitrap XL (2)
Exactive (Thermo Scientific) (2)
MS Imaging - (2)
Nuclear Magnetic Resonance (NMR) - (2)
Agilent Tapestation 4200 (1)
Axon-GenePix 4100A (1)
Typhoon TRIO (1)
GenePix Professional 4200A [Axon Instruments] (1)
418 [Affymetrix] (1)
ScanArray 4000XL [PerkinElmer] (1)
LTQ FT (1)
MaXis (1)
LTQ Velos (1)
Orbitrap Fusion Lumos (1)
TripleTOF 5600 (1)
TripleTOF 6600 (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2014 (107)
2010 (19)
2012 (18)
2011 (17)
2013 (16)
2019 (11)
2008 (10)
2022 (10)
2007 (9)
2025 (8)
2017 (7)
2006 (7)
2020 (7)
2016 (6)
2015 (6)
2005 (6)
2009 (5)
2023 (5)
2024 (4)
2021 (4)
2018 (3)
2004 (1)
2026 (1)

UNIPROT ID/AC

A0A024RC46 (96)
A0A087WTX5 (96)
A0A087WVW2 (96)
A0A087WXI0 (96)
A0A087WYL9 (96)
A0A087X130 (96)
A0A087X1V9 (96)
A0A0A0MS07 (96)
A0A0A0MS51 (96)
A0A0B4J1V0 (96)
A0A0C4DG89 (96)
A0AVT1 (96)
A0FGR8 (96)
A0FGR8-2 (96)
A0FGR8-6 (96)
A0M8Q6 (96)
A0N5G5 (96)
A1L0T0 (96)
A2BFH1 (96)
A2IPI2 (96)
A2IPI5 (96)
A2NB46 (96)
A2NKM6 (96)
A2NUT2 (96)
A2NXP9 (96)
A4F255 (96)
A5A3E0 (96)
A6NHL2 (96)
A6NNZ2 (96)
A8MTJ3 (96)

ENSEMBL ID

ENSG00000170477 (96)
ENSG00000229353 (48)
ENSG00000147251 (19)
ENSG00000176092 (2)
ENSG00000247315 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:16335 (7)
CHEBI:17568 (7)
CHEBI:17822 (7)
CHEBI:22660 (7)
CHEBI:27266 (7)
CHEBI:28044 (7)
CHEBI:30769 (7)
CHEBI:15428 (6)
CHEBI:15741 (6)
CHEBI:15756 (6)
CHEBI:16449 (6)
CHEBI:16704 (6)
CHEBI:16811 (6)
CHEBI:18186 (6)
CHEBI:24266 (6)
CHEBI:24898 (6)
CHEBI:25017 (6)
CHEBI:25094 (6)
CHEBI:26271 (6)
CHEBI:26986 (6)
CHEBI:28300 (6)
CHEBI:32816 (6)
CHEBI:14336 (5)
CHEBI:16010 (5)
CHEBI:16708 (5)
CHEBI:16919 (5)
CHEBI:17154 (5)
CHEBI:17268 (5)
CHEBI:17754 (5)
CHEBI:17964 (5)

Metabolite Name

Creatine (4)
Glutamine (4)
Inosine (4)
Myo-inositol (4)
Nicotinamide (4)
Phenylalanine (4)
Proline (4)
Serine (4)
Uracil (4)
Uridine (4)
Valine (4)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (3)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (3)
1-arachidonoyl-GPA (20:4) (3)
1-linolenoyl-GPC (18:3)* (3)
1-linoleoyl-GPC (18:2) (3)
1-linoleoyl-GPE (18:2)* (3)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6)* (3)
1-palmitoyl-GPC (16:0) (3)
1-palmitoyl-GPE (16:0) (3)
1-stearoyl-2-arachidonoyl-GPC (18:0/20:4) (3)
1-stearoyl-2-arachidonoyl-GPE (18:0/20:4) (3)
1-stearoyl-2-arachidonoyl-GPI (18:0/20:4) (3)
2'-deoxycytidine (3)
2'-deoxyuridine (3)
2-aminoadipate (3)
2-hydroxyglutarate (3)
2-hydroxypalmitate (3)
2-hydroxystearate (3)
2-stearoyl-GPE (18:0)* (3)

First Public Date

2024 (2)
2014 (2)
2025 (1)

Study type

Transcription profiling by array (97)
RNA-seq of coding RNA (10)
Comparative genomic hybridization by array (7)
ChIP-chip by array (6)
Unknown experiment type (3)
ChIP-seq (2)
MicroRNA profiling by array (2)
RNA-seq of total RNA (2)
Two-color microarray (1)
RNAi profiling by array (1)
Genotyping by array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (212)
2022 (207)
2025 (181)
2023 (179)
2024 (164)
2020 (142)
2019 (117)
2018 (113)
2015 (92)
2017 (91)
2016 (82)
2014 (68)
2011 (60)
2013 (59)
2012 (58)
2010 (52)
2026 (36)
2009 (32)
2008 (27)
2007 (15)
2006 (14)
2005 (9)
2002 (5)
2004 (3)
2001 (3)
2003 (2)
2000 (2)
1999 (2)
1998 (1)

Lab affiliation

Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
1Lester and Sue Smith Breast Center and Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA (1)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (1)
Bascom Palmer Eye Institute, Department of Ophthalmology, Miller School of Medicine at University of Miami, Miami, FL 33136, USA +1 (305) 4824103 (1)
Biochemistry and Metabolism Department John Innes Centre Norwich Research Park Norwich, UK (1)
Biochemistry and Metabolism Department John Innes Centre Norwich UK (1)
Breast Center, Baylor College of Medicine, Houston, TX US (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
Charles Perkins Centre, The University of Sydney (1)
Charles Perkins Centre, University of Sydney (1)
Clinical and Experimental Endocrinology Department, KU Leuven, Leuven, Belgium (1)
Department of Biological Sciences, Border Biomedical Research Center, The University of Texas at El Paso, El Paso, TX USA (1)
Department of Pathology and Cancer Center, Stony Brook University, Stony Brook, NY 11794 (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
Liverpool School of Tropical Medicine: Liverpool, England,GB. Senior Lecturer (Parasitology and Vector Biology) (1)
Maine Medical Center Research Institute (1)
Proteomics, Cell Metabolism, Agios, Cambridge, MA, USA (1)
School of Biomedical Sciences, The Chinese University of Hong Kong (1)
UHN (1)
University of California San Diego (1)
University of Minnesota, Twin-Cities, Pharmacology Department (1)
University of Minnesota, Twin-cities Pharmacology Department (1)
University of Nottingham (1)
University of Sheffield (1)

Tags

xref:PubMed:23267561 (1)
xref:PubMed:25999144 (1)
xref:PubMed:24495796 (1)

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Inhibition of the dapE-Encoded N-Succinyl-L,L-diaminopimelic Acid Desuccinylase from Neisseria meningitidis by L-Captopril.

Not available

S-EPMC4671288 | biostudies-literature

EVC protein regulates sonic hedgehog signalling during human intervertebral disc development and degeneration

Notochord-derived cells (NCs) in the developing nucleus pulposus (NP) maintain its hydrated extracellular matrix, essential for the shock-absorbing function of the intervertebral disc (IVD). The aging-associated loss of NCs initiates IVD degeneration, contributing to back pain. Despite their critica...

ORGANISM(S): Homo sapiens

2025-12-08 | E-MTAB-15392 | biostudies-arrayexpress

Response of physiological parameters in Dionaea muscipula J. Ellis teratomas transformed with rolB oncogene.

Not available

S-EPMC8628454 | biostudies-literature

Engineering of increased L-Threonine production in bacteria by combinatorial cloning and machine learning.

Not available

S-EPMC10331477 | biostudies-literature

The effect of various media and hormones via suspension culture on secondary metabolic activities of (Cape Jasmine) Gardenia jasminoides Ellis.

Not available

S-EPMC4055353 | biostudies-literature

Microbiome transition mediated plant immune response to Alternaria solani (Ellis & Martin) Jones & Grout infection in tomato (Solanum lycopersicum L.).