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Unknown
(58548)
Proteomics
(1025)
Genomics
(952)
Transcriptomics
(889)
Metabolomics
(647)
Other
(64)
Methylation profiling
(56)
Models
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Genomic
(1)
Clinical
(1)
Multiomics
(1)
Organisms
Homo sapiens
(516)
Mus musculus
(328)
Arabidopsis thaliana
(46)
Saccharomyces cerevisiae
(42)
Rattus norvegicus
(24)
Caenorhabditis elegans
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Danio rerio
(13)
Drosophila melanogaster
(12)
Escherichia coli str. K-12 substr. MG1655
(12)
Anguilla anguilla
(11)
Bos taurus
(11)
Mammalia
(10)
Daphnia pulex
(9)
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(7)
Bacillus subtilis
(7)
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(7)
Macaca mulatta
(6)
Candida albicans
(5)
Bacillus subtilis subsp. subtilis str. 168
(5)
Glycine max
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Gallus gallus
(5)
Schistosoma mansoni
(5)
Sus scrofa
(4)
Shewanella piezotolerans WP3
(4)
Streptococcus suis
(4)
Xenopus laevis
(4)
Oikopleura dioica
(3)
bioreactor metagenome
(3)
Streptomyces coelicolor
(3)
Arabidopsis
(2)
Organisms
Homo sapiens
(194)
Mus musculus
(139)
Arabidopsis thaliana
(13)
Saccharomyces cerevisiae
(13)
soil metagenome
(9)
rhizosphere metagenome
(7)
Schistosoma mansoni
(6)
Escherichia coli
(6)
Escherichia coli str. K-12 substr. MG1655
(5)
Glycine max
(5)
Danio rerio
(5)
Rattus norvegicus
(5)
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Piscirickettsia salmonis EM-90
(4)
Enterococcus mundtii
(4)
Drosophila melanogaster
(4)
Synechocystis sp. PCC 6803
(3)
Piscirickettsia salmonis
(3)
fungus metagenome
(3)
Oryctolagus cuniculus
(3)
Sus scrofa
(3)
Streptomyces tsukubensis NRRL18488
(2)
Klebsiella pneumoniae ATCC 43816
(2)
Papio anubis
(2)
Schizosaccharomyces pombe
(2)
Lactiplantibacillus plantarum
(2)
Salmo salar
(2)
Bombyx mori
(2)
Ctenomys talarum
(1)
Calescamantes bacterium SCGC AAA471-M6
(1)
Repository
pride
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ENA
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biostudies-arrayexpress
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MetaboLights
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geo
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MassIVE
(121)
EGA
(54)
iProX
(33)
LINCS
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BioModels
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jPOST
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(7)
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NODE
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(1)
dbGaP
(1)
FAIRDOMHub
(1)
Tissue
Cell culture
(133)
Brain
(36)
Epithelial cell
(34)
Blood plasma
(23)
Blood
(22)
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(22)
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(21)
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(13)
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(11)
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(6)
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(5)
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(5)
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(5)
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(5)
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(5)
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(3)
Disease
Disease free
(14)
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(10)
Acute leukemia
(8)
Not Available
(7)
Prostate adenocarcinoma
(7)
Alzheimer's disease
(6)
Colon cancer
(6)
COVID-19
(5)
Lymphoma
(5)
Parkinson's disease
(5)
Type 2 diabetes mellitus
(4)
Cervix carcinoma
(4)
Lung cancer
(4)
Malignant neoplasm of ovary
(4)
Melanoma
(4)
Neuroblastoma
(4)
Normal
(3)
Cockayne syndrome
(3)
Prostate cancer
(3)
Brain glioblastoma multiforme
(2)
Charcot-Marie-Tooth disease
(2)
Uninfected
(1)
Dengue 2 (JAM1409) infected
(1)
"colon adenocarcinoma, acterial infection"
(1)
Follicular thyroid adenoma
(1)
Papillary thyroid carcinoma
(1)
Temporal lobe epilepsy
(1)
None
(1)
Control
(1)
Rash
(1)
Technology Type
Mass Spectrometry
(824)
Mass spectrometry
(497)
Shotgun proteomics
(368)
Bottom-up proteomics
(154)
Chemical cross-linking coupled with mass spectrometry proteomics
(112)
Mass spectrometry assay
(109)
Data-dependent acquisition
(96)
Affinity purification coupled with mass spectrometry proteomics
(77)
Gel-based experiment
(52)
NMR spectroscopy
(39)
HDMSE
(33)
Data-independent acquisition
(31)
Fluorescence intensity
(26)
MEMA
(26)
Top-down proteomics
(25)
SWATH MS
(22)
MSE
(16)
SRM/MRM
(11)
All-ion fragmentation
(6)
Affinity proteomics
(5)
Illumina HiSeq 2000
(2)
NMR spectroscopy assay
(2)
Glycoproteomics
(2)
Complete Genomics (COMPLETE_GENOMICS)
(1)
Illumina HiSeq 2500, ILLUMINA
(1)
ILLUMINA, Illumina HiSeq 2000
(1)
Illumina HiSeq 2500
(1)
Illumina Genome Analyzer II
(1)
DiaPASEF
(1)
Proteogenomics
(1)
Instrument Platform
Illumina NovaSeq 6000
(17)
Illumina HiSeq 4000
(9)
NextSeq 500
(9)
Illumina HiSeq 2500
(5)
Illumina HiSeq 2000
(4)
Illumina Genome Analyzer IIx
(3)
ScanArray Express HT [PerkinElmer]
(3)
Affymetrix
(3)
NextSeq 2000
(3)
10x Chromium
(2)
Illumina NovaSeq X
(2)
Illumina MiSeq
(2)
NextSeq 550
(2)
Ribo-Zero Plant rRNA removal kit (Illumina); TruSeq Stranded Total RNA LT kit (Illumina)
(1)
RNeasy Plant Mini Kit (QIAGEN)
(1)
2D clinostat
(1)
Covaris sonicator, PCR thermocycler, magnetic rack for SPRI bead clean-up
(1)
Liquid-nitrogen mortar and pestle, benchtop microcentrifuge, vortex mixer
(1)
Dissecting tools, liquid nitrogen, −80 °C freezer
(1)
DNBSEQ-G50
(1)
Controlled-environment growth chamber (short-day; 8 h light / 16 h dark)
(1)
The GeneChip Instrument System
(1)
Affymetrix GeneChip Instrument System
(1)
454 GS Junior
(1)
HiSeq X Five
(1)
In Silico Molecular Cloning Program
(1)
MouseWG-6_V2_0_R1_11278593_A
(1)
Agilent DNA Microarray Scanner
(1)
Agilent 2100 Bioanaylzer and ABI StepOnePlus Real-Time PCR System
(1)
Illumina HiScanSQ
(1)
Publication Date
2025
(311)
2024
(307)
2022
(248)
2026
(243)
2023
(238)
2021
(217)
2014
(147)
2020
(144)
2015
(126)
2016
(123)
2013
(116)
2019
(112)
2012
(108)
2011
(85)
2010
(82)
2018
(62)
2017
(52)
2009
(30)
2008
(22)
2005
(16)
2007
(15)
2003
(2)
2004
(2)
2006
(1)
2027
(1)
UNIPROT ID/AC
A5V2A0_SPHWW
(4)
A5V2E2_SPHWW
(4)
A5V2E5_SPHWW
(4)
A5V2G0_SPHWW
(4)
A5V2H3_SPHWW
(4)
A5V2H4_SPHWW
(4)
A5V2H5_SPHWW
(4)
A5V2H6_SPHWW
(4)
A5V2I2_SPHWW
(4)
P62753
(2)
Q6R327
(2)
Q8N122
(2)
O60343
(2)
Q9XFM0
(2)
Q940U6
(2)
P23443
(2)
P42345
(2)
P35568
(2)
P06213
(2)
P14672
(2)
P31751
(2)
Q9LPW7
(1)
Q9LW29
(1)
Q9ZR12
(1)
Q570C0
(1)
P49677
(1)
P01308
(1)
P60568
(1)
P14784
(1)
P31785
(1)
CHEBI ID
CHEBI:30769
(177)
CHEBI:16335
(145)
CHEBI:15741
(142)
CHEBI:15428
(141)
CHEBI:16704
(139)
CHEBI:17368
(133)
CHEBI:16708
(130)
CHEBI:30915
(130)
CHEBI:17596
(130)
CHEBI:18012
(126)
CHEBI:32816
(122)
CHEBI:16750
(119)
CHEBI:6650
(118)
CHEBI:17295
(118)
CHEBI:28044
(115)
CHEBI:17568
(115)
CHEBI:15891
(115)
CHEBI:17895
(114)
CHEBI:15354
(112)
CHEBI:15756
(109)
CHEBI:18237
(108)
CHEBI:27897
(108)
CHEBI:28300
(105)
CHEBI:7916
(104)
CHEBI:16015
(104)
CHEBI:18186
(103)
CHEBI:17750
(103)
CHEBI:16235
(101)
CHEBI:16449
(101)
CHEBI:36080
(2)
Metabolite Name
Adenosine
(88)
Uridine
(87)
Adenine
(84)
L-Phenylalanine
(83)
Hypoxanthine
(83)
Inosine
(82)
Xanthine
(73)
L-Tyrosine
(73)
L-Tryptophan
(69)
Guanosine
(69)
Uracil
(68)
Taurine
(68)
Guanine
(68)
Choline
(64)
Citric acid
(63)
L-Histidine
(62)
Cytidine
(61)
L-Valine
(60)
L-Glutamine
(59)
Creatine
(59)
L-Proline
(58)
Succinic acid
(56)
L-Threonine
(55)
Azelaic acid
(55)
L-Serine
(55)
Glycine
(54)
Glycine
(53)
Cytosine
(53)
Sucrose
(52)
Ornithine
(50)
First Public Date
2025
(142)
2026
(131)
2024
(117)
2023
(76)
2020
(45)
2022
(43)
2021
(43)
2014
(42)
2013
(34)
2019
(30)
2015
(23)
2017
(21)
2016
(17)
2018
(16)
Modelling Approach
Ordinary differential equation model
(23)
Constraint-based model
(2)
Study status
Ongoing
(1)
Lab affiliation
iBET – Instituto de Biologia Experimental e Tecnológica, Av. da República, Oeiras, 2780-157, Portugal
(14)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA
(11)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada
(10)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA
(9)
University of Warwick
(7)
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai, China
(5)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
(5)
Department of Pharmacology, School of Medicine, Case Western Reserve University,cleveland,OH,USA
(4)
University of Pennsylvania
(4)
DIMEVET Università degli Studi di Milano
(3)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048
(3)
Institute for Systems Biology
(3)
Max Planck Institute for Brain Research Max Planck Institute of Biophysics
(3)
NovAliX, Department of Biophysics, 16 Rue d’Ankara, 67000, Strasbourg, France; orcid.org/0000-0001-6229-4524
(3)
Pacific Northwest National Laboratory, USA
(3)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic
(3)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(3)
UCSF
(3)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry
(3)
Analytical Chemistry, Department of Chemistry – BMC and Science for Life Laboratory, Uppsala University, Box 599, 751 24 Uppsala, Sweden
(2)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK.
(2)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia
(2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute of Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands
(2)
Center for Systems and Synthetic Biology Institute for Cellular and Molecular Biology Department of Molecular Biosciences University of Texas at Austin
(2)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany
(2)
Christchurch Heart Institute, Department of Medicine, University of Otago, Christchurch
(2)
DIVAS, University of Milan
(2)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences
(2)
Department of Biochemistry and Molecular Biology School of Medicine, Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, OR 97239, USA
(2)
Department of Biochemistry, The University of British Columbia, Vancouver, Canada
(2)
Tags
pathogen
(48)
pathogen:bacterium
(31)
xref:PubMed:23851394
(16)
xref:PubMed:41708613
(6)
xref:PubMed:39196936
(6)
pathogen:helminth
(6)
pathogen:fungus
(5)
pathogen:virus
(5)
xref:PubMed:28406899
(4)
xref:PubMed:27974453
(4)
xref:PubMed:39997223
(4)
xref:PubMed:42056121
(3)
xref:PubMed:35241646
(3)
xref:PubMed:40330736
(3)
xref:PubMed:40750945
(3)
xref:PubMed:41364533
(3)
xref:PubMed:39562138
(3)
xref:PubMed:41540072
(3)
xref:PubMed:39547229
(3)
xref:PubMed:26324425
(3)
xref:PubMed:40554416
(3)
xref:PubMed:42039161
(3)
xref:PubMed:40436039
(3)
xref:PubMed:38428422
(3)
xref:PubMed:40864554
(3)
xref:PubMed:29078418
(3)
xref:PubMed:26053961
(2)
xref:PubMed:32968275
(2)
xref:PubMed:34706233
(2)
xref:PubMed:40661371
(2)
Keyword
Cipancin
(1)
IsPrivate
False
(25)
Model Flag
Non Kinetic
(2)
Classification
bacteria
(31)
helminths
(6)
fungi
(5)
viruses
(5)
protozoa
(1)
Modification
Not available
(4)
15.994915
(1)
4
(1)
57.021464
(1)
Study type
Transcription profiling by array
(449)
RNA-seq of coding RNA
(91)
ChIP-seq
(42)
Other
(25)
Comparative genomic hybridization by array
(24)
Unknown experiment type
(19)
RNA-seq of non coding RNA
(18)
Methylation profiling by high throughput sequencing
(15)
Methylation profiling by array
(14)
Genotyping by array
(13)
Transcription profiling by tiling array
(12)
ChIP-chip by tiling array
(10)
RNA-seq of coding RNA from single cells
(9)
Transcription profiling by RT-PCR
(5)
Proteomic profiling by array
(4)
Differential
(2)
High-throughput sequencing
(2)
Cell line - High-throughput sequencing
(2)
ChIP-chip by array
(2)
Single nucleus RNA sequencing
(2)
MicroRNA profiling by array
(2)
DNA-seq
(2)
Methyl-seq
(1)
ChIP-chip by SNP array
(1)
Cell line - One-color microarray
(1)
Animal - High-throughput sequencing
(1)
Trajectory
(1)
MicroRNA profiling by high throughput sequencing
(1)
Bisulfite-seq
(1)
4C
(1)
Release Date
2022
(6616)
2021
(6225)
2023
(6195)
2025
(6047)
2024
(5372)
2020
(5001)
2019
(3818)
2018
(3367)
2017
(2854)
2016
(2561)
2015
(2309)
2014
(1874)
2013
(1258)
2012
(1140)
2011
(985)
2026
(961)
2010
(791)
2009
(536)
2008
(432)
2007
(243)
2006
(185)
2005
(134)
2004
(86)
2003
(69)
2002
(63)
2000
(48)
2001
(44)
1998
(37)
1999
(25)
1997
(13)
Location
Portugal
(1)
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Piscirickettsia salmonis EM-90
Piscirickettsia salmonis EM-90
PRJNA231170
|
ENA
Cite
Piscirickettsia salmonis EM-90 isolate:PsEM90
Piscirickettsia salmonis EM-90
PRJNA505825
|
ENA
Cite
Piscirickettsia salmonis EM-90
Piscirickettsia salmonis EM-90 Transcriptome or Gene expression
PRJNA413083
|
ENA
Cite
Lactiplantibacillus plantarum strain:EM
Lactiplantibacillus plantarum strain:EM Genome sequencing and assembly
PRJNA525556
|
ENA
Cite
Exiguobacterium mexicanum strain:A-EM
Exiguobacterium mexicanum strain:A-EM Genome sequencing
PRJNA542428
|
ENA
Cite
Piscirickettsia salmonis EM-90
Piscirickettsia salmonis EM-90 Genome sequencing
PRJNA528620
|
ENA
Cite
Enterococcus mundtii strain:H18-EM
Enterococcus mundtii H18-EM genome sequencing and assembly
PRJNA436479
|
ENA
Cite
Enterococcus mundtii strain:P2-EM
Enterococcus mundtii P2-EM genome sequencing and assembly
PRJNA436692
|
ENA
Cite
Lactobacillus crispatus EM-LC1
Lactobacillus crispatus EM-LC1 Genome sequencing and assembly
PRJNA200566
|
ENA
Cite
Enterococcus mundtii strain:K7-EM
Enterococcus mundtii strain:K7-EM Genome sequencing and assembly
PRJNA436689
|
ENA
Cite
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