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TranscriptomicsNext Generation Metatranscriptome Sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia
Purpose: Identification of transcriptionally active genes in the unculturable community constituent, Smithella, during hexadecane degradation; Differential gene expression analysis of hexadecane-relevant genes acoss three different conditions; Extension of metatranscriptomic datasets to other commun...
ORGANISM(S): mixed culture KAZ_0815 
2013-10-29 | E-GEOD-49830 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of E. coli MG1655
Expression profiling of wild type and purR deletion strains of E. coli K-12 MG1655 under both M9 minimal media and addition of adenine. An eight chip study with two different strains under two separate culture conditions.
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2011-06-14 | E-GEOD-26588 | biostudies-arrayexpress
TranscriptomicsAnalysis of the iron stimulon and fur regulon of Geobacter sulfurreducens
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Geobacter sulfurreducens PCA 
2014-03-10 | E-GEOD-54306 | biostudies-arrayexpress
TranscriptomicsAnalysis of the iron stimulon and fur regulon of Geobacter sulfurreducens [expression]
G. sulfurreducens was cultured on a variety of different iron concentrations and differential expression analysis was used to identify the iron stimulon. Wild type G. sulfurreducens was cultured on fresh water media with trace concentrations of iron (iron sufficient condition) as well as no trace ir...
ORGANISM(S): Geobacter sulfurreducens PCA 
2014-03-10 | E-GEOD-54304 | biostudies-arrayexpress
TranscriptomicsAnalysis of the iron stimulon and fur regulon of Geobacter sulfurreducens [ChIP-chip]
Fur is a transcriptional regulator whose activity is dependent on Fe(II) concentrations. Chromatin immunoprecipitation (ChIP) coupled to microarray analysis allowed for the identification of Fur binding sites within the G. sulfurreducens genome. Wild type G. sulfurreducnes was cultured on fresh wate...
ORGANISM(S): Geobacter sulfurreducens PCA 
2014-03-10 | E-GEOD-54305 | biostudies-arrayexpress
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