Enrichment. - OmicsDI

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enrichment culture (30)
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Mass Spectrometry (7463)
Mass spectrometry (343)
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ILLUMINA, Illumina HiSeq 2500 (2)
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Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip (1)
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Illumina 450K, Bisulfite-Seq (1)
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Illumina HiSeq 4000 (90)
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Publication Date

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2024 (2124)
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2008 (260)
2007 (117)
2006 (63)
2005 (35)
2004 (25)
2003 (3)
2027 (3)

UNIPROT ID/AC

O25420 (1)
Q48271 (1)
O25044 (1)
O25333 (1)
O25332 (1)
O25786 (1)
O25071 (1)
O25342 (1)
O26078 (1)
O26085 (1)
O26018 (1)
O25376 (1)
O25488 (1)
Q48262 (1)
O25014 (1)
O26011 (1)
O25838 (1)
O25551 (1)
O25150 (1)
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O26077 (1)
O25505 (1)
P56003 (1)
O25122 (1)
O25124 (1)
P56117 (1)
P56176 (1)
O25872 (1)
O26103 (1)
O26102 (1)

ENSEMBL ID

ENSG00000170477 (83)
ENSG00000147251 (60)
ENSG00000229353 (45)
ENSG00000204131 (40)
ENSG00000176092 (27)
ENSG00000247315 (21)
ENSMUSG00000027651 (12)
ENSMUSP00000141097 (11)
ENSMUSG00000021039 (10)
ENSMUSP00000106991 (7)
ENSMUSG00000090272 (7)
ENSMUSP00000111587 (6)
ENSMUSG00000098557 (5)
ENSMUSP00000141542 (2)
ENSMUSG00000096833 (1)

CHEBI ID

CHEBI:30769 (83)
CHEBI:16704 (80)
CHEBI:16335 (78)
CHEBI:17596 (76)
CHEBI:15891 (73)
CHEBI:16919 (71)
CHEBI:17368 (71)
CHEBI:7916 (70)
CHEBI:15428 (70)
CHEBI:18012 (69)
CHEBI:16750 (65)
CHEBI:15741 (65)
CHEBI:17568 (64)
CHEBI:16708 (64)
CHEBI:30915 (64)
CHEBI:16737 (61)
CHEBI:15354 (60)
CHEBI:28044 (60)
CHEBI:17295 (59)
CHEBI:16015 (59)
CHEBI:17154 (59)
CHEBI:17895 (58)
CHEBI:15756 (57)
CHEBI:32816 (57)
CHEBI:17268 (55)
CHEBI:17750 (55)
CHEBI:18237 (54)
CHEBI:27897 (53)
CHEBI:17562 (53)
CHEBI:36080 (1)

Metabolite Name

Hypoxanthine (127)
Inosine (125)
Uridine (113)
Adenine (110)
Creatine (108)
Adenosine (103)
L-Phenylalanine (99)
Taurine (97)
Uracil (96)
L-Tyrosine (94)
L-Histidine (93)
Xanthine (93)
Guanosine (93)
Choline (92)
Creatinine (90)
L-Tryptophan (88)
L-Glutamine (88)
Xanthosine (87)
Cytosine (83)
L-Threonine (81)
Guanine (80)
Pantothenic acid (78)
L-Proline (78)
Riboflavin (77)
Cytidine (77)
Thymine (76)
Azelaic acid (75)
Betaine (74)
L-Valine (74)
Uric acid (74)

First Public Date

2026 (2733)
2025 (2393)
2024 (2195)
2023 (1620)
2022 (1434)
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2020 (1267)
2014 (1149)
2019 (1128)
2018 (924)
2017 (889)
2015 (454)
2016 (440)
2013 (352)
2012 (7)
2010 (5)
2011 (4)

Modelling Approach

Other (17)
Differential equation model (3)
Ordinary differential equation model (3)
Constraint-based model (3)
Machine learning (1)
Computational model (1)
Partial differential equation model (1)

Study status

Recruiting (4)
Not provided (1)
Not yet recruiting (1)
Completed (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (17)
University of Edinburgh (17)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (16)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (15)
Moffitt Cancer Center Tampa, FL, USA (14)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (14)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (14)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (13)
Institute of Molecular Biology (IMB), Mainz, Germany (12)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (11)
Department of Microbiology and Immunology, The University of Melbourne, Victoria, Australia (11)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (11)
Cornell University (11)
NCI/NIH CSB (10)
IRCCS Istituto G Gaslini (10)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (10)
School of Life Sciences, University of Warwick (9)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (9)
UCSF (9)
ETH Zurich (9)
The University of Melbourne (9)
Functional Proteomics, ICR (9)
Department Biochemistry of Plant Interactions, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany (8)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (8)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (8)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (8)
Molecular Genetics, RPTU Kaiserslautern, Germany (8)
ETH Zurich, Institute of Molecular Systems Biology (7)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (7)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (7)

Tags

pathogen (325)
pathogen:bacterium (173)
pathogen:protozoan (65)
pathogen:fungus (50)
xref:PubMed:29069476 (46)
pathogen:virus (34)
wastewater (21)
covid19 (15)
xref:PubMed:42271055 (14)
xref:PubMed:38092908 (12)
xref:PubMed:41890112 (12)
xref:PubMed:24608543 (11)
xref:PubMed:37286593 (11)
xref:PubMed:36522426 (9)
xref:PubMed:40128456 (8)
xref:PubMed:35577813 (8)
xref:PubMed:34853314 (8)
xref:PubMed:41849237 (8)
xref:PubMed:31028100 (7)
xref:PubMed:27111721 (7)
xref:PubMed:39720854 (7)
xref:PubMed:29144447 (7)
xref:PubMed:37515769 (7)
xref:PubMed:26484077 (6)
xref:PubMed:24121163 (6)
xref:PubMed:33298911 (6)
xref:PubMed:32883883 (6)
xref:PubMed:41372142 (6)
xref:PubMed:33798202 (6)
xref:PubMed:33113353 (6)

Keyword

Microsatellite (1)
Colorectal cancer stem cells (1)
Multi-cancer early detection (1)
Liquid Biopsy (1)
Methylome (1)
Cell-free DNA (1)
Cancer screening (1)

IsPrivate

False (31)

Model Flag

Non Kinetic (2)

Submitter Keywords

Machine Learning Model (18)
FAIR-AIML (2)
Not Peer Reviewed (2)
Ersilia (1)

Classification

bacteria (173)
protozoa (65)
fungi (50)
viruses (34)
helminths (3)

Modification

4x(15)N labeled L-arginine (25)
2x(15)N labeled L-lysine (23)
15.994915 (12)
N6 (11)
42.010565 (8)
N6-dimethyl-L-lysine (8)
-17.026549 (7)
57.021464 (7)
Not available (7)
4-tetrahydrothiazine-3-carboxylic acid (6)
4x(2)H labeled dimethylated residue (3)
4 (3)
45.029395 (2)
10.008269 (2)
0.984016 (2)
79.966331 (2)
-18.010565 (2)
58.005479 (2)
57.02146 (2)
15.99491 (2)
4x(2)H labeled dimethylated L-lysine (2)
788.725776 (1)
47.984744 (1)
3-dipalmitoyl-glycerol)cysteine (1)
27.994915 (1)
4-dinitrophenyl modified residue (1)
3'' (1)
6-dioxaoctanediamine derivatized cysteine (1)
6x(2)H labeled dimethylated L-arginine (1)
0.984 (1)

Study type

Transcription profiling by array (2411)
RNA-seq of coding RNA (1115)
ChIP-seq (1043)
ChIP-chip by tiling array (182)
Methylation profiling by array (164)
Methylation profiling by high throughput sequencing (155)
Other (104)
RNA-seq of coding RNA from single cells (96)
RNA-seq of non coding RNA (89)
DNA-seq (83)
ChIP-chip by array (76)
Comparative genomic hybridization by array (67)
Unknown experiment type (61)
RNA-seq of total RNA (50)
Transcription profiling by tiling array (36)
Animal - High-throughput sequencing (25)
Proteomic profiling by array (22)
Cell line - High-throughput sequencing (21)
Genotyping by high throughput sequencing (20)
Human - High-throughput sequencing (18)
MicroRNA profiling by array (18)
High-throughput sequencing (15)
Genotyping by array (11)
MicroRNA profiling by high throughput sequencing (11)
Exome sequencing (10)
Transcription profiling by RT-PCR (9)
RIP-seq (8)
Transcription profiling by SAGE (7)
Bisulfite-seq (7)
ScATAC-seq (7)

Release Date

2022 (9607)
2025 (9571)
2023 (8207)
2021 (7482)
2024 (7342)
2020 (5443)
2019 (3765)
2018 (2916)
2016 (2554)
2017 (2476)
2015 (2470)
2014 (2109)
2013 (1881)
2012 (1380)
2026 (1364)
2011 (1169)
2010 (998)
2009 (542)
2008 (436)
2007 (220)
2006 (144)
2005 (106)
2004 (58)
2003 (45)
2001 (35)
2002 (32)
2000 (25)
1998 (23)
1999 (21)
1997 (5)

Location

Japan (2)
United States (2)
Egypt (1)
China (1)
Germany (1)

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EDD: a program for detection of wide genomic enrichment domains robust against local variations [RNA-Seq]

Nuclear lamins contact the genome at the nuclear periphery through large domains and are involved in chromatin organization. Among broad peak calling algorithms available to date, none are suited for mapping lamin-genome interactions genome-wide. We disclose a novel algorithm, Enriched Domain Detect...

ORGANISM(S): Homo sapiens

2014-04-25 | E-GEOD-54333 | biostudies-arrayexpress

enrichment culture

Metagenomic sequencing of aerobic enrichment culture

PRJDB15991 | ENA

enrichment culture

Enrichment from mangrove soil Raw sequence reads

PRJNA344556 | ENA

enrichment culture

Amplicon sequencing of Nitrotoga enrichment cultures

PRJDB8089 | ENA

Enrichment Culture

Enrichment Culture

PRJNA1091148 | ENA

Consortium enrichment

Consortium enrichment for nitrous oxide reduction

PRJNA534018 | ENA

111TCA-dechlorinating enrichment culture

111TCA-dechlorinating enrichment culture Raw sequence reads

PRJNA892270 | ENA

CBP is required for environmental enrichment-induced neurogenesis and cognitive enhancement.

The epigenetic changes of the chromatin represent an attractive molecular substrate for adaptation to the environment. We examined here the role of CBP, a histone acetyltransferase involved in mental retardation, in the genesis and maintenance of long-lasting systemic and behavioral adaptations to e...

ORGANISM(S): Mus musculus

2011-08-29 | E-GEOD-30880 | biostudies-arrayexpress

bromoform-metabolizing enrichment culture

Enrichment culturing of bromoform metabolizing bacteria

PRJDB6994 | ENA

methane-oxidizing enrichment culture

enrichment of marine sediment Raw sequence reads

PRJNA309112 | ENA

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