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MetabolomicsInsights into Metabolic Changes Caused by the Trichoderma virens-Maize Root Interaction
The interactions of crops with root-colonizing endophytic microorganisms are highly relevant to agriculture, because endophytes can modify plant resistance to pests and increase crop yields. We investigated the interactions between the host plant Zea mays and the endophytic fungus Trichode...
2021-07-08 | MTBLS1964 | MetaboLights
MetabolomicsEnterococcus faecalis readily adapts membrane phospholipid composition to environmental and genetic perturbation

The bacterial lipid membrane, consisting both of fatty acid (acyl) tails and polar head groups, responds to changing conditions through alteration of either the acyl tails and/or head groups. This plasticity is critical for cell survival as it allows maintenance of both the protective nature of t...

2021-05-17 | MTBLS2080 | MetaboLights
MetabolomicsEnvironmental Chemical Diethylhexyl Phthalate Alters Intestinal Microbiota Community Structure and Metabolite Profile in Mice
Exposure to environmental chemicals during windows of development is a potentially contributing factor in gut microbiota dysbiosis, and linked to chronic diseases and developmental disorders. We used a community-level model of microbiota metabolism to investigate the effects of diethylhexyl phthalat...
2022-01-17 | MTBLS861 | MetaboLights
MetabolomicsHigh metabolic variation for seaweeds in response to environmental changes: a case study of the brown algae Lobophora in coral reefs
In the marine environment, macroalgae face changing environmental conditions and some species are known for their high capacity to adapt to the new factors of their ecological niche. Some macroalgal metabolites play diverse ecological functions and belong to the adaptive traits of such species. Beca...
2019-09-02 | MTBLS707 | MetaboLights
TranscriptomicsInteraction between BZR1 and PIF4 integrates brassinosteroid and environmental responses [RNA-seq]
Plant growth is coordinately regulated by environmental and hormonal signals. Brassinosteroid (BR) plays essential roles in growth regulation by light and temperature, but the interactions between BR and these environmental signals remain poorly understood at the molecular level. Here, we show that ...
ORGANISM(S): Arabidopsis thaliana 
2012-07-07 | E-GEOD-37159 | biostudies-arrayexpress
TranscriptomicsCBP is required for environmental enrichment-induced neurogenesis and cognitive enhancement.
The epigenetic changes of the chromatin represent an attractive molecular substrate for adaptation to the environment. We examined here the role of CBP, a histone acetyltransferase involved in mental retardation, in the genesis and maintenance of long-lasting systemic and behavioral adaptations to e...
ORGANISM(S): Mus musculus 
2011-08-29 | E-GEOD-30880 | biostudies-arrayexpress
TranscriptomicsGene-environment interaction in yeast gene expression
This study is a quantitative trait linkage mapping study targeted at gene-environment interaction. A family of yeast derived from BY4716 and RM11-1a was grown in two carbon sources (glucose and ethanol) and expression profiled. The analysis revealed how the influence of genetic factors changes in di...
ORGANISM(S): Saccharomyces cerevisiae 
2008-04-15 | E-GEOD-9376 | biostudies-arrayexpress
TranscriptomicsPax3 and Pax7 play essential safeguard functions against environmental stress-induced birth defects
Exposure to environmental teratogenic pollutant leads to severe birth defects. However, the biological events underlying these developmental abnormalities remain undefined. Here we report a molecular link between an environmental stress response pathway and key developmental genes during craniofacia...
ORGANISM(S): Mus musculus 
2015-04-06 | E-MTAB-3238 | biostudies-arrayexpress
ProteomicsEnvironmental interactions and epistasis are revealed in the proteomic responses to complex stimuli
Ultimately, the genotype of a cell and its interaction with the environment determine the cell’s biochemical state. While the cell’s response to a single stimulus has been studied extensively, a conceptual framework to model the effect of multiple environmental stimuli applied concurrently is not a...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2015-07-20 | PXD002371 | Pride
Yeast Environmental epistasis Mudpit Environmental interaction Saccharomyces cerevisiae Itraq 
TranscriptomicsCalvarial osteoblast transcriptome analysis identifies genetic targets and extracellular matrix-mediated focal adhesion as potential biomarkers for single-suture craniosynostosis
Craniosynostosis is a disease defined by premature fusion of one or more cranial sutures. The mechanistic pathology of isolated single-suture craniosynostosis is complex and while a number of genetic biomarkers and environmental predispositions have been identified, in many cases the causes remain c...
ORGANISM(S): Homo sapiens 
2012-03-04 | E-GEOD-27976 | biostudies-arrayexpress
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