Enzymology - OmicsDI

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Unknown (2382)
Transcriptomics (1118)
Metabolomics (183)
Genomics (168)
Proteomics (23)
Other (5)
Methylation profiling (2)

Organisms

Homo sapiens (378)
Mus musculus (265)
Arabidopsis thaliana (94)
Saccharomyces cerevisiae (85)
Rattus norvegicus (35)
Drosophila melanogaster (30)
Schizosaccharomyces pombe (15)
Escherichia coli (11)
Streptomyces coelicolor (9)
Caenorhabditis elegans (8)
Gallus gallus (8)
Danio rerio (8)
synthetic construct (8)
Aspergillus niger (6)
Chlamydomonas reinhardtii (6)
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Medicago truncatula (5)
Zea mays (5)
Oryza sativa (5)
Mycobacterium tuberculosis (5)
Saccharomyces cerevisiae S288C (5)
Staphylococcus aureus (5)
Porphyromonas gingivalis (4)
Anopheles gambiae (4)
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Salmo salar (4)
Pseudomonas aeruginosa (4)
Trichoderma reesei (3)

Organisms

Homo sapiens (9)
food fermentation metagenome (3)
Saccharomyces cerevisiae (3)
synthetic construct (3)
Drosophila melanogaster (2)
Mus musculus (2)
Rhizopus microsporus var. chinensis CCTCC M201021 (1)
Methylosinus trichosporium OB3b (1)
Xanthomonas citri subsp. citri 306 (1)
Parthenium argentatum (1)
Komagataella pastoris (1)
Thermococcus kodakarensis (1)
Aspergillus terreus (1)
Penaeus japonicus (1)
fermentation metagenome (1)
Pediococcus acidilactici (1)
Escherichia coli (1)
Rattus norvegicus (1)
soil metagenome (1)
bioreactor metagenome (1)

Repository

biostudies-arrayexpress (1220)
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ENA (46)
pride (21)
geo (17)
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Tissue

Cell culture (2)
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Disease

Normal (9)
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Reference (2)
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Nondiabetic (1)
Replicate control (1)
Lung adenocarcinoma (1)
Uninfected 11dpi (1)
Spindle cell tumor (1)
Not applicable (1)
Myeloid neoplasm (1)
Colon cancer Dukes C (1)
Steatosis (1)
Diffuse large B-cell lymphoma (1)
Infected with Influenza A/WSN/33 (H1N1) (1)
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Healthy (1)
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Control (1)
IRAK-4 Q293X mutation (1)
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Sarcoma (1)
S enteritidis (1)
Osteosarcoma (1)

Technology Type

Mass spectrometry (119)
Mass spectrometry assay (55)
Mass Spectrometry (21)
Bottom-up proteomics (8)
NMR spectroscopy (6)
Data-dependent acquisition (5)
Shotgun proteomics (5)
Illumina HiSeq 2000 (3)
Affinity purification coupled with mass spectrometry proteomics (3)
MSE (2)
Top-down proteomics (2)
Illumina HiSeq 1000 (1)
Gel-based experiment (1)
HDMSE (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (43)
NextSeq 500 (24)
Illumina HiSeq 4000 (20)
Illumina MiSeq (12)
Illumina HiSeq 2500 (11)
Illumina HiSeq 2000 (10)
NextSeq 2000 (7)
NextSeq 550 (5)
Scanning hardware (4)
ArrayWoRx Biochip Reader [Applied Precision] (3)
Illumina NovaSeq X (3)
PromethION (2)
Other (2)
Illumina Genome Analyzer IIx (2)
Affymetrix Fluidics Station 400 (2)
HiSeq X Ten (2)
Hisat2 v2.0.5 (1)
DESeq (1)
Growthroom (1)
Illumina Novaseq platform (1)
10x Chromium with a target of 5,000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v2 (1)
10X Genomics reagent kit (1)
Bio-Rad CFX96 Real-time System (1)
BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
Microarray scanner system (1)
Microcentrifuge (1)
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Affymetrix Genechip scanner 3000 (1)
Affymetrix Genechip hybridisation oven 650 (1)

Publication Date

2010 (155)
2012 (147)
2013 (146)
2014 (114)
2011 (113)
2008 (86)
2015 (85)
2026 (83)
2016 (67)
2025 (59)
2009 (56)
2007 (55)
2022 (44)
2021 (39)
2020 (34)
2005 (32)
2024 (28)
2023 (27)
2017 (20)
2006 (19)
2018 (16)
2019 (12)
2004 (4)
2003 (1)

CHEBI ID

CHEBI:30769 (37)
CHEBI:15428 (34)
CHEBI:6650 (31)
CHEBI:15741 (30)
CHEBI:18012 (30)
CHEBI:17568 (28)
CHEBI:17596 (28)
CHEBI:28300 (26)
CHEBI:27266 (26)
CHEBI:32816 (26)
CHEBI:26271 (25)
CHEBI:30915 (25)
CHEBI:17822 (24)
CHEBI:18186 (24)
CHEBI:16750 (24)
CHEBI:28044 (24)
CHEBI:16335 (24)
CHEBI:16704 (24)
CHEBI:16027 (24)
CHEBI:17368 (24)
CHEBI:22660 (23)
CHEBI:16811 (23)
CHEBI:18257 (23)
CHEBI:16708 (23)
CHEBI:17154 (23)
CHEBI:25094 (22)
CHEBI:15891 (22)
CHEBI:16449 (22)
CHEBI:18237 (21)
CHEBI:26986 (21)

Metabolite Name

Adenosine (31)
Guanosine (31)
Hypoxanthine (31)
Taurine (29)
Uracil (28)
Inosine (28)
Pyroglutamic acid (27)
Serine (27)
Guanine (27)
Adenine (27)
Xanthine (26)
Glycine (25)
Methionine (25)
Uridine (25)
Choline (24)
Glutamine (24)
Citric acid (23)
Phenylalanine (23)
Creatine (23)
Tryptophan (23)
Betaine (22)
Citrulline (22)
Tyrosine (22)
Leucine (21)
Lysine (21)
Alanine (21)
Creatinine (21)
Thymine (20)
Kynurenic acid (20)
Ornithine (20)

First Public Date

2021 (6)
2019 (5)
2018 (5)
2017 (5)
2025 (4)
2020 (4)
2014 (4)
2026 (3)
2024 (3)
2022 (3)
2015 (2)
2013 (2)

Classification

fungi (2)
bacteria (1)

Study type

Transcription profiling by array (693)
RNA-seq of coding RNA (143)
ChIP-seq (69)
Comparative genomic hybridization by array (57)
Other (29)
RNA-seq of coding RNA from single cells (28)
Unknown experiment type (26)
Methylation profiling by high throughput sequencing (22)
ChIP-chip by tiling array (21)
RNA-seq of non coding RNA (18)
Methylation profiling by array (17)
DNA-seq (15)
ChIP-chip by array (12)
Transcription profiling by RT-PCR (9)
Genotyping by high throughput sequencing (7)
Cell line - High-throughput sequencing (6)
Genotyping by array (6)
Transcription profiling by tiling array (5)
High-throughput sequencing (3)
Hi-C (3)
Transcription profiling by SAGE (2)
RNA-seq of non coding RNA from single cells (2)
Human - Single-cell sequencing (2)
Plant - High-throughput sequencing (2)
Cell line - One-color microarray (2)
4C (2)
ATAC-seq (2)
Single nucleus RNA sequencing (2)
RNA-seq of total RNA (2)
Cell line - Single-cell sequencing (1)

Release Date

2021 (248)
2022 (242)
2023 (240)
2012 (216)
2013 (206)
2025 (201)
2020 (201)
2010 (195)
2016 (192)
2014 (188)
2015 (185)
2019 (173)
2024 (168)
2011 (166)
2018 (162)
2017 (158)
2008 (118)
2009 (96)
2007 (73)
2005 (47)
2026 (45)
2006 (34)
2004 (14)
2002 (9)
2001 (6)
2003 (5)
2000 (5)
1999 (4)
1998 (2)
1997 (1)

Lab affiliation

Department of Biochemistry Biophysics and Structural Biology, Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, St. Louis, Missouri, United States (2)
Laboratory of Enzymology and Molecular Biology (LEBIMO), Institute of Biology, University of Campinas (UNICAMP) (2)
Professor Emeritus Department of Chemistry The University of Texas at San Antonio Effective July 1, 2026: Johnson Foundation Professor of Chemical Enzymology Department of Biochemistry and Biophysics, Perelman School of Medicine Department of Chemistry, School of Arts and Sciences University of Pennsylvania, Philadelphia, PA 19104 (2)
Assistant Professor Department of Medicine, Division of Endocrinology, Metabolism, and Nutrition Department of Pharmacology and Cancer Biology Duke University Medical Center (1)
Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Goettingen, Germany (1)
CBS-KNAW FUNGAL BIODIVERSITY CENTRE (1)
Center for Synthetic Microbiology & Department of Chemistry, Marburg University,Hans-Meerwein-Straße 4, 35043 Marburg, Germany (1)
Centre for Structural Systems Biology CSSB, Deutsches Elektronen-Synchrotron DESY & Leibniz Institute of Virology (LIV) & University of Lübeck, Notkestr. 85, 22607 Hamburg, Germany Institute of Chemistry and Metabolomics, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany (1)
Department of Biochemistry and Center for Cancer Research, Purdue University, West Lafayette, Indiana 47907 (1)
Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands. (1)
Head of Enzymology Department, Institute of Biochemistry of the Romanian Academy (IBRA) (1)
Head of the Laboratory of Enzymology and Molecular Biology (LEBIMO) Institute of Biology - University of Campinas (UNICAMP) (1)
Institute of Biochemistry and Biology, Department of Molecular Enzymology, University of Potsdam, Potsdam, Germany (1)
Institute of Proteomics and Molecular Enzymology, School of Life Sciences, Zhejiang Sci-Tech University (1)
National Laboratory of Biorenewables (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, São Paulo, Brazil (1)
Structural Glycoimmunology Laboratory, BiobizkaiaHealth Research Institute, Barakaldo, Spain (1)
University of Chicago, Department of Molecular Genetics and Cell Biology, Chicago IL 60637, USA (1)

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Expanding the viewpoint: Leveraging sequence information in enzymology.

Not available

S-EPMC10251232 | biostudies-literature

Optimized photochemistry and enzymology enable efficient analysis of RNA structures and interactions in cells

PRJNA628878 | ENA

Oxygraphy Versus Enzymology for the Biochemical Diagnosis of Primary Mitochondrial Disease.

Not available

S-EPMC6835216 | biostudies-literature

Single-molecule nanopore enzymology.

Not available

S-EPMC5483527 | biostudies-literature

Biomedical Applications of Nanozymes: An Enzymology Perspective.

Not available

S-EPMC12603999 | biostudies-literature

Enzymology of standalone elongating ketosynthases.

Not available

S-EPMC9006962 | biostudies-literature

Asparaginyl endopeptidases: enzymology, applications and limitations.

Not available

S-EPMC8209628 | biostudies-literature

Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation

Multiple DNA polymerases are needed to replicate genetic information. Here we describe the use of ribonucleotide incorporation as a biomarker of replication enzymology in vivo. We find that ribonucleotides are incorporated into the yeast nuclear genome in replicase specific and strand-specific patte...

ORGANISM(S): Saccharomyces cerevisiae

2015-01-26 | GSE62181 | GEO

Two Different Isocitrate Dehydrogenases from Pseudomonas aeruginosa: Enzymology and Coenzyme-Evolutionary Implications.

Not available

S-EPMC10574006 | biostudies-literature

Plasmon-Enhanced Single-Molecule Enzymology.

Not available

S-EPMC6105035 | biostudies-literature

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