Ephrin - OmicsDI

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Transcriptomics (169)
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Organisms

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Disease

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- (2)
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Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
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CHEBI ID

CHEBI:18050 (6)
CHEBI:16857 (6)
CHEBI:17053 (6)
CHEBI:16414 (6)
CHEBI:16856 (5)
CHEBI:16750 (5)
CHEBI:16467 (5)
CHEBI:17191 (5)
CHEBI:17295 (5)
CHEBI:36281 (4)
CHEBI:18257 (4)
CHEBI:28842 (4)
CHEBI:17148 (4)
CHEBI:4167 (4)
CHEBI:17196 (4)
CHEBI:17620 (4)
CHEBI:16335 (4)
CHEBI:18019 (4)
CHEBI:17203 (4)
CHEBI:15971 (4)
CHEBI:18012 (4)
CHEBI:16643 (4)
CHEBI:27432 (4)
CHEBI:42094 (3)
CHEBI:27856 (3)
CHEBI:28866 (3)
CHEBI:30764 (3)
CHEBI:6052 (3)
CHEBI:17716 (3)
CHEBI:17992 (3)

Metabolite Name

Choline (7)
Pyroglutamic acid (6)
Uracil (5)
Benzoic acid (5)
L-Arginine (5)
L-Threonine (5)
Nicotinamide (5)
Taurine (5)
Sarcosine (5)
L-Glutamine (5)
Guanosine (5)
Uridine (5)
L-Valine (5)
L-Isoleucine (5)
L-Phenylalanine (5)
Hypoxanthine (5)
D-Glucose (4)
Phenylalanine (4)
Glycerol (4)
L-Alanine (4)
Saccharopine (4)
L-Lysine (4)
L-Aspartic acid (4)
L-Homoserine (4)
L-Asparagine (4)
L-Histidine (4)
Adenosine (4)
Adenine (4)
L-Serine (4)
L-Methionine (4)

First Public Date

2014 (16)
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2020 (9)
2023 (6)
2022 (5)
2017 (5)
2015 (5)
2021 (4)
2019 (2)
2018 (2)
2016 (1)
2013 (1)

Classification

viruses (1)

Modification

0.984016 (1)
1.99407 (1)
10.008269 (1)
15.994915 (1)
3.98814 (1)
57.021464 (1)
79.966331 (1)
8.014199 (1)

Study type

Transcription profiling by array (57)
RNA-seq of coding RNA (21)
Unknown experiment type (4)
Comparative genomic hybridization by array (4)
RNA-seq of total RNA (4)
ChIP-seq (3)
DNA-seq (3)
Other (2)
RNA-seq of coding RNA from single cells (2)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (91)
2025 (77)
2022 (73)
2023 (69)
2018 (64)
2015 (63)
2016 (61)
2024 (54)
2020 (53)
2017 (48)
2019 (47)
2012 (44)
2013 (43)
2014 (41)
2010 (35)
2011 (33)
2008 (25)
2009 (21)
2026 (19)
2007 (17)
2006 (15)
2005 (9)
2004 (4)
2003 (2)
1999 (2)
2002 (1)
2001 (1)
2000 (1)
1998 (1)

Lab affiliation

Moffitt Cancer Center Tampa, FL, USA (3)
Biochemistry Department, Kavli Institute for Nanoscience Discovery, University of Oxford, UK (1)
Biomolecular Mass Spectrometry and Proteomics (1)
Cancer Research UK Manchester Institute, The University of Manchester, Wilmslow Road, Manchester M20 4BX, United Kingdom (1)
Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (1)
Centre for Systems Biology at the SLRI (1)
Chair of Proteomics and Bioanalytics Technical University of Munich Germany (1)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic Rochester, MN 55905 USA (1)
Department of Neurology, the First Affiliated Hospital of Chongqing Medical University, Chongqing 400016, China (1)
Genomic Medicine, Infection Biology, Lerner Research Institute, Cleveland Clinic (1)
Institut de recherches cliniques de Montréal (IRCM), Montréal, QC, H2W 1R7, Canada Integrated Program in Neuroscience, McGill University, Montréal, QC, H3A 2B4, Canada Division of Experimental Medicine, McGill University, Montréal, QC, H3A 2B2, Canada Department of Anatomy and Cell Biology, McGill University, Montréal, QC, H3A 0C7, Canada (1)
Institute of Clinical Medicine, University of Tartu, Tartu, Estonia (1)
Institute of Functional Genomics, Univ. Montpellier, CNRS, INSERM, Montpellier, France (1)
Institute of Molecular Medicine and Cell Research University of Freiburg Germany (1)
Krefting Research Centre, Institute of Medicine at Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden (1)
Laboratory of Neuroproteomics, DBBT, IB, Universidade Estadual de Campinas, Brazil (1)
Max Planck Institut for Molecular Biomedicine Bioanalytical Mass Spectromentry Röntgenstr. 20 48149 Münster, Germany (1)
Max Planck Institute for Heart and Lung Research, Laboratory for Cell Polarity and Organogenesis, Germany (1)
Mayo Clinic, Rochester, MN, USA (1)
Research Center of Basic Integrative Medicine, School of Basic Medical Science, Guangzhou University of Chinese Medicine, Guangzhou, 510006, China (1)
THORACIC & GI ONCOLOGY BRANCH, NCI, NIH, Bethesda, MD 20892 (1)
The Institute of Clinical Research and Translational Medicine, Gansu Provincial Hospital, Lanzhou, 730000, China NHC Key Laboratory of Diagnosis and Therapy of Gastrointestinal Tumor, Gansu Provincial Hospital, Lanzhou, 730000, China (1)
University of Vienna (1)

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Identification of immediate early transcriptional targets of ephrin-B1 forward signaling

The goal of this study was to identify immediate early transcriptional targets of ephrin-B1 forward signaling that are relevant to palatogenesis. The Ephs compose a family of receptor tyrosine kinase signaling molecules that can be activated by their cognate ligands, the ephrins. Despite the import...

ORGANISM(S): Mus musculus

2010-09-20 | E-GEOD-23539 | biostudies-arrayexpress

Transcription profiling of mouse colon tissue taken 3-12 hours after injection of ephrinB2-Fc

To gain a global view of the signaling pathways engaged by EphB receptors in the intestinal epithelium, we analyzed the transcriptional alteraltions after acute inhibition of EphB signaling in vivo. An intravenous injection of ephrin-B2-Fc decreases EphB2 tyrosine phosphorylation and results in a re...

ORGANISM(S): Mus musculus

2009-12-18 | E-TABM-753 | biostudies-arrayexpress

Eph-ephrin signaling couples endothelial cell sorting and arterial specification

PRJNA928081 | ENA

Notch-mediated Ephrin signaling disrupts islet architecture and β cell function

PRJNA798353 | ENA

Cell-specific information processing in segregating populations of Eph receptor-ephrin-expressing cells

ORGANISM(S): Homo sapiens (Human)

2009-12-11 | PRD000814 | Pride

Analysis of the gene expression profile in cutaneous squamous cell carcinoma cells after EphB2 knockdown

The role of Eph/ephrin signaling in numerous biological processes has been established. However, Eph/ephrin signaling has been shown to have complex role in tumor progression. The role of EphB2 receptor in the progression of cutaneous squamous cell carcinoma (cSCC) has not been studied before. EphB2...

ORGANISM(S): Homo sapiens

2015-08-27 | E-GEOD-66361 | biostudies-arrayexpress

Effect of Ephrin-A5 DNA Nanocalipers stimulation of EphA2 receptor signaling in U3013 cell line

PRJNA576597 | ENA

Developmental regulation of long-range neuroblast migration by Eph/ephrin signaling

PRJNA1312064 | ENA

Ephrin-B1 and ephrin-B2 mediate EphB-dependent presynaptic development via syntenin-1.

Not available

S-EPMC2787153 | biostudies-literature

Identification of immediate early transcriptional targets of ephrin-B1 forward signaling

ORGANISM(S): Mus musculus

2010-09-21 | GSE23539 | GEO