Epigenetics - OmicsDI

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Unknown (14761)
Genomics (4659)
Transcriptomics (2616)
Proteomics (459)
Methylation profiling (185)
Other (52)
Metabolomics (42)
Genomic (11)
Clinical (3)

Organisms

Homo sapiens (2425)
Mus musculus (1218)
Arabidopsis thaliana (162)
Drosophila melanogaster (106)
Rattus norvegicus (96)
Caenorhabditis elegans (26)
Danio rerio (24)
Saccharomyces cerevisiae (22)
Zea mays (20)
Sus scrofa (18)
Oryza sativa (17)
Gallus gallus (17)
Plasmodium falciparum (16)
Schizosaccharomyces pombe (13)
Bos taurus (11)
Oryza sativa Japonica Group (8)
Macaca mulatta (8)
Pan troglodytes (7)
Brassica napus (6)
Canis lupus familiaris (5)
Taeniopygia guttata (5)
Oryza sativa Indica Group (5)
Camponotus floridanus (4)
Plasmodium falciparum 3D7 (4)
Bombyx mori (4)
Nasonia giraulti (3)
Oxytricha trifallax (3)
Papio anubis (3)
Monodelphis domestica (3)
Xenopus laevis (3)

Organisms

Homo sapiens (1188)
Mus musculus (863)
Drosophila melanogaster (84)
Arabidopsis thaliana (56)
Saccharomyces cerevisiae (43)
Rattus norvegicus (35)
Caenorhabditis elegans (20)
Danio rerio (17)
Oryza sativa (11)
Schizosaccharomyces pombe (10)
Xenopus laevis (9)
Vitis vinifera (9)
Plasmodium falciparum (8)
Naumovozyma castellii (7)
Gallus gallus (7)
Bos taurus (7)
Oryza sativa Japonica Group (7)
Procambarus virginalis (6)
Escherichia coli (6)
Zea mays (6)
urine metagenome (5)
Gossypium hirsutum (5)
Triticum aestivum (5)
Canis lupus familiaris (5)
Cricetulus griseus (4)
Nicotiana benthamiana (4)
Xenopus tropicalis (4)
Macaca fascicularis (4)
Oryza sativa Indica Group (4)
Thermothelomyces thermophilus ATCC 42464 (3)

Repository

biostudies-arrayexpress (3232)
ENA (3158)
geo (650)
EGA (463)
pride (335)
MassIVE (75)
MetaboLights (40)
iProX (23)
jPOST (13)
dbGaP (11)
LINCS (11)
PanoramaPublic (6)
EVA (3)
GPMDB (3)
GNPS (1)
MetabolomicsWorkbench (1)
NODE (1)
PAXDB (1)

Tissue

Cell culture (103)
Embryonic stem cell (22)
Epithelial cell (22)
Permanent cell line cell (17)
Brain (13)
Blood (12)
Breast (10)
Fibroblast (10)
Lung (10)
B cell (10)
HeLa cell (9)
T cell (9)
Macrophage (8)
Embryo (8)
Liver (7)
Blood cell (7)
Stem cell (6)
Leaf (6)
Cell suspension culture (5)
Seedling (4)
Sperm (4)
Skin (4)
Plant cell (4)
Testis (4)
Whole body (4)
Primary cell (4)
Kidney (4)
Neutrophil (4)
Seminal plasma (1)
Prostate (1)

Disease

Breast cancer (22)
Acute leukemia (11)
Disease free (8)
Cervix carcinoma (7)
Normal (5)
Glioblastoma (5)
Colon cancer (5)
Lymphoma (4)
Not Available (3)
Hepatocellular carcinoma (3)
Non-small cell lung carcinoma (3)
Plasmodium falciparum malaria (3)
Infiltrating ductal carcinoma (2)
Glioblastoma multiforme (2)
Brain glioblastoma multiforme (2)
Non-Hodgkin lymphoma (1)
Breast Carcinoma (1)
Phyllodes tumor (1)
Post-stasis (1)
Burkitt's lymphoma (1)
Primary tumor (1)
DNA repair deficiency (1)
Colorectal carcinoma (1)
"hyperglycaemic, obese and insulin resistant" (1)
Colorectal adenocarcinoma (1)
Prostate carcinoma (1)
Invasive ductal carcinoma (1)
Oesophageal cancer (1)
Lung Neoplasms (1)
Colorectal Neoplasms (1)

Technology Type

Illumina HiSeq 2000 (14)
ILLUMINA, Illumina HiSeq 2000 (4)
Illumina HiSeq 2000, ILLUMINA (4)
ILLUMINA, Illumina HiSeq 2500 (3)
Illumina Genome Analyzer II (3)
Illumina HiSeq 4000, ILLUMINA (2)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 4000 (1)
Illumina MiSeq, Illumina HiSeq 2000, ILLUMINA (1)
Illumina HiSeq 3000, Illumina HiSeq 2000, Illumina HiSeq 4000, ILLUMINA (1)
NextSeq 500, ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 1000 (1)
450K (1)
Human Cardio Metabochip (1)
Illumina HumanWG-6 (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
OXFORD_NANOPORE, MinION (1)
Illumina HumanMethylation450K, Illumina HiSeq 2500, Illumina InfiniumCoreExome-24v1-1_A, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HumanMethylation450K, Illumina InfiniumCoreExome-24v1-1_A (1)
Illumina Genome Analyzer II, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina 450K (1)
Illumina HumanMethylation 450K (1)
MeDIP-seq (1)
Illumina_450K, Illumina_HumanHT-12_V4, ILLUMINA, Illumina HiSeq 2000 (1)
Affymetrix SNP 6.0 (1)
Illumina 450k (1)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)

Instrument Platform

Illumina NovaSeq 6000 (58)
Illumina HiSeq 2500 (56)
Illumina HiSeq 2000 (50)
NextSeq 500 (44)
Illumina HiSeq 4000 (19)
Illumina NovaSeq X (10)
NextSeq 550 (10)
Illumina Genome Analyzer IIx (9)
HiSeq X Ten (7)
2100 Bioanalyzer Agilent (6)
NextSeq 2000 (5)
IScan (4)
Intel Core 2 Duo E8500 3.16 GHz or equivalent (4)
- (4)
PromethION (3)
GenePix 4000B [Axon Instruments] (3)
Illumina HiSeq 1000 (3)
Illumina HiSeq 3000 (3)
AB SOLiD 5500 (2)
Complete Genomics (2)
Illumina iScan (2)
418 [Affymetrix] (2)
MinION (2)
Illumina HiSeq 1500 (2)
Maxwell® RSC 48 Instrument (Promega, AS8500) (1)
Transrectal ultrasound-guided systematic sampling of prostate tissue (TRUS biopsy) (1)
Active Motif Catalog No. 53150 (1)
Shanghai Genefund Biotech Co., Ltd Illumina NovaSeq 6000 (1)
IEO HPC (1)
NovaSeq6000 (1)

Publication Date

2015 (625)
2014 (530)
2013 (448)
2012 (396)
2016 (364)
2010 (283)
2011 (263)
2025 (202)
2024 (171)
2026 (159)
2021 (143)
2023 (135)
2022 (117)
2020 (99)
2009 (97)
2018 (83)
2008 (81)
2019 (79)
2017 (62)
2007 (19)
2006 (13)
2004 (2)

UNIPROT ID/AC

LAMB3_MOUSE (1)
LRRC1_MOUSE (1)
COLQ_MOUSE (1)
CFA53_MOUSE (1)
MBD3_MOUSE (1)
MMP9_MOUSE (1)
S6A14_MOUSE (1)
NFIA_MOUSE (1)
NPHP4_MOUSE (1)
LOXL3_MOUSE (1)
CFA57_MOUSE (1)
SG3A2_MOUSE (1)
ABCA5_MOUSE (1)
CC151_MOUSE (1)
Q80UR4_MOUSE (1)
YIPF6_MOUSE (1)
K1C15_MOUSE (1)
MYO1F_MOUSE (1)
PHAG1_MOUSE (1)
SPAT6_MOUSE (1)
NSRP1_MOUSE (1)
S39A8_MOUSE (1)
MCPT8_MOUSE (1)
SP17_MOUSE (1)
FRM4B_MOUSE (1)
VGFR1_MOUSE (1)
DLRB2_MOUSE (1)
PMFBP_MOUSE (1)
LFNG_MOUSE (1)
GRK5_MOUSE (1)

CHEBI ID

CHEBI:15891 (13)
CHEBI:30769 (13)
CHEBI:15741 (13)
CHEBI:15422 (12)
CHEBI:17202 (12)
CHEBI:17858 (12)
CHEBI:16737 (12)
CHEBI:16708 (12)
CHEBI:30915 (12)
CHEBI:17750 (11)
CHEBI:16335 (11)
CHEBI:16680 (11)
CHEBI:17929 (10)
CHEBI:17659 (10)
CHEBI:17552 (10)
CHEBI:16761 (10)
CHEBI:17345 (10)
CHEBI:16264 (10)
CHEBI:6650 (10)
CHEBI:22660 (10)
CHEBI:16919 (10)
CHEBI:28300 (10)
CHEBI:17287 (9)
CHEBI:17268 (9)
CHEBI:48928 (9)
CHEBI:15996 (9)
CHEBI:16027 (9)
CHEBI:15414 (9)
CHEBI:15846 (9)
CHEBI:22653 (9)

Metabolite Name

Taurine (11)
Adenosine (10)
Creatinine (10)
Betaine (8)
Hypoxanthine (8)
Citrate (7)
GDP (7)
IMP (7)
Adenine (7)
ADP (7)
Uridine (7)
Glycerophosphocholine (6)
Glutamine (6)
UTP (6)
UDP (6)
ATP (6)
AMP (6)
GMP (6)
NADH (6)
Succinate (6)
Malate (6)
Glucose (6)
Niacinamide (6)
UMP (6)
Creatine (6)
L-Phenylalanine (6)
Cytidine (6)
Xanthine (6)
Leucine (5)
Carnosine (5)

First Public Date

2025 (376)
2024 (350)
2023 (293)
2020 (271)
2014 (266)
2026 (251)
2021 (240)
2022 (213)
2019 (213)
2018 (186)
2017 (151)
2015 (145)
2013 (111)
2016 (90)
2012 (2)

Classification

protozoa (12)
bacteria (10)
fungi (4)
helminths (1)

Modification

N6 (20)
N6-dimethyl-L-lysine (10)
1x(15)N labeled L-valine (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study status

Active, not recruiting (1)
Terminated (1)
Recruiting (1)

Study type

Transcription profiling by array (951)
ChIP-seq (536)
Methylation profiling by array (523)
RNA-seq of coding RNA (395)
Methylation profiling by high throughput sequencing (311)
ChIP-chip by tiling array (105)
RNA-seq of non coding RNA (72)
Other (64)
Comparative genomic hybridization by array (38)
ChIP-chip by array (22)
ATAC-seq (21)
Transcription profiling by tiling array (19)
Bisulfite-seq (17)
DNA-seq (16)
Genotyping by array (14)
RNA-seq of coding RNA from single cells (14)
Unknown experiment type (11)
Animal - High-throughput sequencing (10)
RNA-seq of total RNA (10)
Cell line - High-throughput sequencing (9)
Transcription profiling by RT-PCR (9)
Plant - High-throughput sequencing (6)
MicroRNA profiling by array (6)
Human - Methylation microarray (4)
MicroRNA profiling by high throughput sequencing (4)
Genotyping by high throughput sequencing (4)
MeDIP-seq (3)
Human - High-throughput sequencing (3)
MBD-seq (3)
Single nucleus RNA sequencing (3)

Release Date

2021 (1621)
2022 (1611)
2023 (1546)
2025 (1397)
2020 (1376)
2024 (1304)
2015 (1244)
2019 (1152)
2018 (1070)
2014 (1063)
2016 (1055)
2017 (848)
2013 (767)
2012 (638)
2011 (402)
2010 (364)
2026 (193)
2009 (130)
2008 (119)
2007 (41)
2006 (26)
2004 (9)
2005 (5)
2003 (5)
2002 (3)

Lab affiliation

Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany. (6)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg, Germany (5)
European Institute of Oncology (5)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg Germany (4)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (4)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (4)
Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany (3)
Department of Biology – Cellular Proteostasis and Mass Spectrometry, University of Konstanz (3)
European Institute of Oncology, Milan (3)
Department of Biology II and Center for Integrated Protein Science Munich (CIPSM), Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany (3)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (3)
Institute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany (2)
Cancer Biology and Genetics, Wexner Medical Center, The Ohio State University, Columbus, OH, USA (2)
Key Laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, China. (2)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (2)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia (2)
Proteomics Unit Max Planck Institute of Immunobiology and Epigenetics Stuebeweg 51 79108 Freiburg, Germany (2)
Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University (2)
Group Leader in Epigenetics, Friedrich Miescher Institute, Basel, Switzerland (2)
Division of Systems Medicine, Imperial College London (2)
Proteomics Unit Max Planck Institute of Immunobiology and Epigenetics (2)
Professor, Department of Epigenetics and Molecular Carcinogenesis, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Northeast Normal University (2)
Chromatin Biology Laboratory, Cancer Epigenetics and Biology Program (PEBC), Bellvitge Biomedical Research Institute (IDIBELL), L’Hospitalet de Llobregat, Barcelona, Spain. Chromatin Biology Laboratory, Josep Carreras Leukaemia Research Institute (IJC), Badalona, Spain. (2)
Pacific Northwest National Laboratory, USA (2)
Chromosome dynamics and genome stability, Institute of Epigenetics and Stem Cells, Helmholtz Zentrum München, Feodor-Lynen-Strasse 21, 81377 München, Germany (2)
European Institute of Oncology, Milan, Italy (2)
Centre for Inflammation Research, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK. (2)

Location

United Kingdom (1)
Brazil (1)
Germany (1)

Keyword

Fish oils (1)
Epigenetics (1)
Phase-II-Study (1)
Second-line-treatment (1)
Open-label (1)
Vectibix (1)
Body composition (1)
Randomized (1)
Microbiota (1)
Colorectal (1)
Panitumumab (1)
Metastatic (1)
KRAS (1)
Capecitabine (1)
Oxaliplatin (1)

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Sperm Environmental Epigenetics and Development Study (SEEDS)

Not available

ORGANISM(S): Homo sapiens

ST002368 | MetabolomicsWorkbench

Loss of p53 exacerbates autoimmunity by reprogramming propionyl-CoA metabolism and epigenetics in Treg cells

Metabolic regulation is central to the tumor suppressor function of p53. Here we report that propionyl-CoA metabolic remodeling and epigenetic changes underpin p53-mediated restraint of autoimmunity through regulatory T (Treg) cells. By analyzing the human patients with autoimmune diseases, we fo...

2026-02-06 | MTBLS13473 | MetaboLights

Role of Epigenetics in Unicellular to Multicellular Transition in Dictyostelium

The evolution of multicellularity is a critical event that remains incompletely understood. We use the social amoeba, Dictyostelium discoideum, one of the rare organisms that exists in both unicellular and multicellular stages, to examine the role of epigenetics in regulating multicellularity. While...

ORGANISM(S): Dictyostelium Discoideum Ax2

2021-06-15 | PXD024225 | panorama

Synthetic epigenetics-towards intelligent control of epigenetic states and cell identity.

Not available

S-EPMC4347971 | biostudies-literature

ChIP-Seq of epigenetics mutants

ChIP-Seq of epigenetics mutants of Arabidopsis thaliana

PRJEB53877 | ENA

Advances in Nutritional Epigenetics-A Fresh Perspective for an Old Idea. Lessons Learned, Limitations, and Future Directions.

Not available

S-EPMC7750768 | biostudies-literature

Illumina RNA-Seq of epigenetics mutants