Equus caballus - OmicsDI

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Genomics (476)
Transcriptomics (295)
Proteomics (231)
Unknown (174)
Metabolomics (20)
Methylation profiling (8)
Models (1)
Other (1)

Organisms

Equus caballus (302)
Homo sapiens (32)
Mus musculus (19)
Bos taurus (19)
Rattus norvegicus (17)
Sus scrofa (12)
Campylobacter jejuni (8)
Equus asinus (6)
Monodelphis domestica (4)
Mesocricetus auratus (4)
Macaca mulatta (4)
Bartonella grahamii (3)
Porphyromonas gingivalis (3)
Populus tremula x Populus alba (2)
Apodemus sylvaticus (1)
Agaricus bisporus (1)
Cameraria ohridella (1)
Bartonella koehlerae (1)
Corynebacterium pseudotuberculosis (1)
Achnatherum inebrians (1)
Bacteroides thetaiotaomicron VPI-5482 (1)
Bartonella henselae (1)
Bos indicus (1)
Streptococcus suis (1)
Neisseria meningitidis (1)
Listeria monocytogenes (1)
Streptococcus dysgalactiae subsp. dysgalactiae (1)
Helicobacter pylori (1)
Burkholderia mallei (1)
Streptococcus pneumoniae (1)

Organisms

Equus caballus (352)
Equus caballus x Equus asinus (4)
Equus (3)
Acholeplasma equirhinis (1)
Leptospira weilii serovar Ranarum str. ICFT (1)
Leptospira interrogans str. Brem 329 (1)
Leptospira borgpetersenii serovar Poi str. Brem 171 (1)
Equus asinus x Equus caballus (1)
food fermentation metagenome (1)

Repository

ENA (400)
geo (204)
biostudies-arrayexpress (142)
pride (141)
PeptideAtlas (49)
EVA (33)
MassIVE (18)
jPOST (15)
MetaboLights (14)
iProX (5)
MetabolomicsWorkbench (5)
PanoramaPublic (2)
BioModels (1)
EGA (1)
GNPS (1)
PAXDB (1)

Tissue

Blood plasma (13)
Bone (11)
Cell culture (9)
Blood serum (7)
Heart (7)
Synovial tissue (6)
Sperm (5)
Brain (4)
Tendon (4)
Primary cell (4)
Liver (4)
Blood (3)
Gluteal muscle (3)
Extracellular vesicle (3)
Milk (3)
Stem cell (3)
Blood (3)
Feces (2)
Articular cartilage (2)
Cumulus cell (2)
Hair (2)
Uterine endometrium (2)
Blood platelet (2)
Cerebrospinal fluid (2)
Semen (2)
Mesenchymal cell (2)
Egg (2)
Embryo (2)
Dendritic cell (2)
Kidney (2)

Disease

Osteoarthritis (6)
Normal (3)
Uveitis (2)
Sham infected (1)
Myofibrillar myopathy (1)
Autoimmune uveitis (1)
Autoimmune disease of eyes (1)
Chronic neutrophilic leukemia (1)
Abdominal pain (1)
Endometritis (1)
Parasitic infectious disease (1)
Myopathy (1)
Rheumatoid arthritis (1)
Wounds and Injuries (1)
Disease free (1)

Technology Type

Mass Spectrometry (144)
Shotgun proteomics (70)
Bottom-up proteomics (38)
Data-dependent acquisition (20)
Data-independent acquisition (9)
Top-down proteomics (9)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
Mass spectrometry (7)
SWATH MS (7)
Gel-based experiment (6)
NMR spectroscopy (5)
SRM/MRM (3)
NMR spectroscopy assay (2)
NMR (2)
ESI (2)
DiaPASEF (2)
MALDI (1)
MSE (1)
All-ion fragmentation (1)
HDMSE (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

- (20)
Illumina NovaSeq 6000 (10)
Illumina HiSeq 4000 (7)
Illumina HiSeq 2500 (5)
NextSeq 500 (4)
LTQ Orbitrap Elite (4)
Variable Atmosphere Incubator (3)
Illumina HiSeq 2000 (3)
Affymetrix (3)
Orbitrap Fusion Lumos (3)
Illumina Genome Analyzer IIx (2)
Illumina MiSeq (2)
University College Dublin Animal Research Ethics Committee approval, a licence from the Department of Health (B100/3525) and explicit owner/trainer informed consent were obtained for the use of all horses and procedures in this study. (1)
Nanodrop 2000c spectrophotometer (1)
Illumina Genome Analyser II (1)
GeneQuant DNA/RNA caluculator (1)
Ultrospec 3000 (1)
Flexercell FX-4000C (1)
454 GS FLX (1)
AB SOLiD 3 Plus System (1)
AB SOLiD System (1)
Bioanalyser (1)
NextSeq 550 (1)
Illumina HiSeq 3500, Illumina HiSeq 2500, Illumina NovaSeq 6000 (1)
ABI 3500 Genetic Analyzer (1)
Ion S5XL (1)
AB 3130 Genetic Analyzer (1)
Illumina (1)
Orbitrap - NEGATIVE (1)
Orbitrap - POSITIVE (1)

Publication Date

2014 (74)
2025 (59)
2024 (49)
2026 (47)
2020 (39)
2023 (38)
2022 (37)
2021 (36)
2019 (36)
2018 (36)
2016 (30)
2010 (25)
2012 (22)
2013 (21)
2017 (18)
2015 (17)
2011 (11)
2009 (10)
2007 (7)
2008 (6)
2006 (5)
2005 (2)

UNIPROT ID/AC

89462.XP_006056225.1 (1)
89462.XP_006041532.1 (1)
89462.XP_006058292.1 (1)
89462.XP_006045053.1 (1)
89462.XP_006060653.1 (1)
89462.XP_006069634.1 (1)
89462.XP_006051518.1 (1)
89462.XP_006049024.1 (1)
89462.XP_006052984.1 (1)
89462.XP_006048787.1 (1)
89462.XP_006068436.1 (1)
89462.XP_006061276.1 (1)
89462.XP_006068111.1 (1)
89462.XP_006056580.1 (1)
89462.XP_006075251.1 (1)
89462.XP_006069899.1 (1)
89462.XP_006078644.1 (1)
89462.XP_006064893.1 (1)
89462.XP_006059694.1 (1)
89462.XP_006043557.1 (1)
89462.XP_006063283.1 (1)
89462.XP_006042337.1 (1)
89462.XP_006058703.1 (1)
89462.XP_006058182.1 (1)
89462.XP_006045871.1 (1)
89462.XP_006042907.1 (1)
89462.XP_006061901.1 (1)
89462.XP_006048532.1 (1)
89462.XP_006075175.1 (1)
89462.XP_006050114.1 (1)

ENSEMBL ID

ENSECAG00000025135.1 (1)
ENSECAG00000005838.1 (1)
ENSECAG00000012652.1 (1)
ENSECAG00000024994.1 (1)
ENSECAG00000008327.1 (1)
ENSECAG00000004989.1 (1)
ENSECAG00000017638.1 (1)
ENSECAG00000023262.1 (1)
ENSECAG00000010022.1 (1)
ENSECAG00000002116.1 (1)
ENSECAG00000012520.1 (1)
ENSECAG00000023490.1 (1)
ENSECAG00000008450.1 (1)
ENSECAG00000023528.1 (1)
ENSECAG00000024436.1 (1)
ENSECAG00000023293.1 (1)
ENSECAG00000012059.1 (1)
ENSECAG00000019125.1 (1)
ENSECAG00000023083.1 (1)
ENSECAG00000020502.1 (1)
ENSECAG00000015001.1 (1)
ENSECAG00000023146.1 (1)
ENSECAG00000006420.1 (1)
ENSECAG00000016863.1 (1)
ENSECAG00000014853.1 (1)
ENSECAG00000003055.1 (1)
ENSECAG00000017188.1 (1)
ENSECAG00000023911.1 (1)
ENSECAG00000000682.1 (1)
ENSECAG00000023040.1 (1)

CHEBI ID

CHEBI:16737 (7)
CHEBI:16919 (7)
CHEBI:17750 (6)
CHEBI:16347 (6)
CHEBI:30769 (6)
CHEBI:16344 (5)
CHEBI:15428 (5)
CHEBI:7916 (5)
CHEBI:15891 (5)
CHEBI:16857 (5)
CHEBI:32816 (5)
CHEBI:48430 (4)
CHEBI:15611 (4)
CHEBI:16709 (4)
CHEBI:27570 (4)
CHEBI:30751 (4)
CHEBI:16811 (4)
CHEBI:28300 (4)
CHEBI:15676 (4)
CHEBI:15741 (4)
CHEBI:17549 (4)
CHEBI:18050 (4)
CHEBI:15366 (4)
CHEBI:16414 (4)
CHEBI:27897 (4)
CHEBI:17895 (4)
CHEBI:18089 (4)
CHEBI:68566 (3)
CHEBI:84838 (3)
CHEBI:30805 (3)

Metabolite Name

Creatinine (7)
Creatine (6)
Glycine (5)
Betaine (5)
L-Glutamine (5)
L-Carnitine (5)
L-Tyrosine (5)
L-Lactic acid (4)
Formic acid (4)
L-Alanine (4)
Guanidoacetic acid (4)
Acetic acid (4)
L-Histidine (4)
Choline (4)
Citric acid (4)
L-Valine (4)
L-Leucine (4)
L-Phenylalanine (4)
Ethanol (3)
Pyruvic acid (3)
D-Glucose (3)
Glycerol (3)
L-Lysine (3)
Pantothenate (3)
L-Threonine (3)
1-Methylhistidine (3)
Taurine (3)
3-Hydroxybutyric acid (3)
5-Aminolevulinic acid (3)
Sarcosine (3)

First Public Date

2024 (49)
2025 (33)
2017 (33)
2026 (31)
2023 (31)
2014 (31)
2013 (28)
2019 (27)
2018 (27)
2022 (26)
2021 (26)
2020 (24)
2016 (18)
2015 (16)

Lab affiliation

University of Liverpool (6)
Globe Institute, University of Copenhagen, Denmark (3)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (3)
Departamento de Medicina Animal, Hospital Clínico Veterinario Universidad de Extremadura Avd de la Universidad s/n 10003 Cáceres SPAIN (2)
Institute of Ageing and Chronic Disease, University of Liverpool, United Kingdom (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
University of Washington Department of Genome Sciences (2)
Institute for Experimental Medicine, Christian Albrechts Universitaet Kiel (1)
John van Geest Centre, Nottingham Trent University (1)
Institute of Ageing and Chronic Disease, Musculoskeletal Biology I University of Liverpool UK (1)
Division of Neurobiology The Roslin Institute Royal (Dick) School of Veterinary Studies College of Medicine and Veterinary Medicine University of Edinburgh Easter Bush Midlothian EH25 9RG SCOTLAND, UK t: 44 (0)131 651 9119 e: T.M.Wishart@Roslin.ed.ac.uk website: http://www.roslin.ed.ac.uk/tom-wishart http://www.euanmacdonaldcentre.com/research.html (1)
Functional Genomics Center Zurich, Switzerland (1)
Mary Anne McPhail Dressage Chair in Equine Sports Medicine Department Large Animal Clinical Sciences College of Veterinary Medicine Michigan State University (1)
Department of Biosciences (1)
Department of Large Animals Diseases and Clinic, Institute of Veterinary Medicine, Warsaw University of Life Sciences, Nowoursynowska 166, 02-787, Warsaw, Poland (1)
Globe Institute, Faculty of Health and Medical Science, University of Copenhagen, Øster Farimagsgade 5, 1353, Copenhagen, Denmark (1)
Institute of Bioengineering, School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London, E1 4NS, UK (1)
CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China (1)
Core Facility Metabolomics and Proteomics, Helmholtz Center Munich, German Research Center for Environmental Health, Munich, Germany (1)
McPhail Equine Performance Center, Department of Large Animal Clinical Sciences, Michigan State University (1)
Associate Professor of Medicine Harvard Medical School Director, Mass Spectrometry Core Beth Israel Deaconess Medical Center 3 Blackfan Circle CLS 447 office CLS 425 lab Boston, MA 02115 Tel: 617-735-2651 (1)
National Yang-Ming University Proteomics Research Center (R648), Taipei, 112 Taiwan (ROC) (1)
Key Laboratory of function protein research of Guangdong Higer Education Institutes and MOE Key Laboratory of Tumor Molecular Biology, Institute of life and health engineering, Jinan University, Guangzhou, China (1)
Proteomics and Metabolomics Facility (1)
Deming Department of Medicine, School of Medicine, Tulane University, United States (1)
Department of Veterinary Sciences, Ludwig-Maximilians-University of Munich, Munich, Germany Department of Experimental Ophthalmology, Philipps University of Marburg, Marburg, Germany (1)
University of Liverpool, Institute of Life Course and Medical Sciences, University of Liverpool, United Kingdom (1)
Racing Laboratory, The Hong Kong Jockey Club (1)
Department of Chemical Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Roessle-Str. 10, 13125, Berlin, Germany (1)
Chemistry of Michigan State University (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (1)

Modification

0.984016 (1)
4 (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (71)
RNA-seq of coding RNA (36)
Comparative genomic hybridization by array (14)
ChIP-chip by array (3)
RNA-seq of non coding RNA (3)
Animal - High-throughput sequencing (2)
ChIP-seq (2)
DNA-seq (2)
RNA-seq of total RNA (2)
Unknown experiment type (1)
High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
ATAC-seq (1)
Other (1)
MicroRNA profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2024 (31)
2010 (27)
2014 (21)
2021 (20)
2020 (19)
2012 (19)
2023 (17)
2016 (16)
2022 (16)
2018 (15)
2013 (15)
2015 (14)
2019 (13)
2026 (12)
2025 (11)
2017 (10)
2011 (10)
2009 (9)
2007 (7)
2006 (6)
2008 (4)
2005 (1)
2004 (1)
2003 (1)
1999 (1)

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Whole transcriptome analyses of six thoroughbred horses before and after exercising using RNA-Seq

We sequenced the whole mRNA of six thoroughbred horse (Equus caballus) blood and muscle tissues before and after exercising, generating a total of 1.3 billion short reads with 90-bp pair-end sequences from 24 samples. Comparing with current genome annotation, we identified 32,361 unigene clusters sp...

ORGANISM(S): Equus caballus

2013-05-01 | E-GEOD-37870 | biostudies-arrayexpress

Equus caballus

Equus caballus Raw sequence reads

PRJNA940192 | ENA

Equus caballus

Equus caballus Raw sequence reads

PRJNA401382 | ENA

Equus caballus

Equus caballus mitochondrial DNA sequencing

PRJNA202969 | ENA

Equus caballus breed:Arabian

Equus caballus RNA-Seq data

PRJNA412040 | ENA

Equus caballus breed:Lichuan

horse ( Equus caballus) Raw sequence reads

PRJNA401300 | ENA

Equus caballus

Equus caballus Genome sequencing and assembly

PRJNA200654 | ENA

Equus caballus

Equus caballus Genome sequencing and assembly

PRJNA421018 | ENA

Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing

Horse-specific genes are not readily identified from available equine EST/cDNA resources due to relatively limited coverage. In addition, equine gene sets predicted in silico by Ensembl and NCBI will not identify horse specific genes since they rely on homology-based projection of gene structure ann...

ORGANISM(S): Equus caballus

2013-07-30 | E-GEOD-46858 | biostudies-arrayexpress

Equus caballus isolate:JJ_horse_1 | breed:Jinjiang horse

Equus caballus isolate:JJ_horse_1 | breed:Jinjiang horse Genome sequencing and assembly

PRJNA1532626 | ENA

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