Ernst Stefan S - OmicsDI

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Unknown (8)
Transcriptomics (6)
Genomics (5)
Models (1)
Other (1)
Metabolomics (1)

Organisms

Homo sapiens (8)
Mus musculus (2)
Bacillus subtilis (1)
Tribolium castaneum (1)

Repository

biostudies-arrayexpress (6)
EGA (5)
BioModels (1)
GPMDB (1)
MetaboLights (1)

Disease

Not Available (1)

Technology Type

ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Mass spectrometry (1)

Instrument Platform

Instrument (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2013 (3)
2007 (2)
2024 (1)
2015 (1)

CHEBI ID

CHEBI:16134 (1)
CHEBI:32484 (1)
CHEBI:10138 (1)
CHEBI:10565 (1)
CHEBI:116314 (1)
CHEBI:15354 (1)
CHEBI:15365 (1)
CHEBI:15383 (1)
CHEBI:15613 (1)
CHEBI:15698 (1)
CHEBI:15713 (1)
CHEBI:15727, CHEBI:57485 (1)
CHEBI:15729 (1)
CHEBI:15741 (1)
CHEBI:15756 (1)
CHEBI:15760 (1)
CHEBI:15811 (1)
CHEBI:15815 (1)
CHEBI:15843 (1)
CHEBI:15873 (1)
CHEBI:15940 (1)
CHEBI:15956 (1)
CHEBI:15966, CHEBI:53375 (1)
CHEBI:16008 (1)
CHEBI:16010 (1)
CHEBI:16027 (1)
CHEBI:16031 (1)
CHEBI:16040 (1)
CHEBI:16113 (1)
CHEBI:16171 (1)

Metabolite Name

(+)-Pyroglutamic acid (1)
(+/-)-Pipecolate (1)
(+/-)-Propionylcarnitine chloride (1)
(-)-Tetradecanoylcarnitine (1)
(10E)-12-Oxododecenoic acid (1)
(10E,12Z,15Z)-9-hydroxyoctadeca-10,12,15-trienoic acid (1)
(13S)-Hydroxyoctadecadienoate (1)
(1s,3z)-3-[(2e)-2-[(1r,3ar,7as)-7a-Methyl-1-[(2r)-6-Methylheptan-2-Yl]-2,3,3a,5,6,7-Hexahydro-1h-Inden-4-Ylidene]ethylidene]-4-Methylidene-Cyclohexan-1-Ol (1)
(2-hydroxy-3-stearoyloxy-propyl) 2-(trimethylammonio)ethyl phosphate (1)
(2E)-2-Phenyl-2-propenoic acid (1)
(2E)-3-(1H-imidazol-4-yl)prop-2-enoic acid (1)
(2R,3R,4S,5S,6R)-2-[[(2R,3S,4S,5R,6R)-6-[(2R,3R,4S,5R,6R)-6-[(2S,3S,4R,5S)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-3,4,5-trihydroxy-oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol (1)
(2S)-1-[(2S)-2-azaniumyl-3-phenyl-propanoyl]pyrrolidine-2-carboxylate (1)
(2S)-1-[(2S)-5-amino-2-[[(2S)-2-amino-4-methyl-pentanoyl]amino]-5-keto-pentanoyl]proline (1)
(2S)-2-(methylamino)Pentanedioic acid (1)
(2S)-2-Amino-3-methylbutanoic acid (1)
(2S)-2-[[(4S)-4-amino-4-carboxy-butanoyl]amino]-4-methyl-pentanoic acid (1)
(2S)-2-amino-5-[[(1S)-1-carboxy-2-methyl-propyl]amino]-5-oxo-pentanoic acid (1)
(2S)-3-(5-mercapto-3-methyl-imidazol-4-yl)-2-(methylammonio)propionate (1)
(2S,3R)-(-)-Threonine (1)
(2S,3R)-2-[[[[9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)-2-oxolanyl]-6-purinyl]amino]-oxomethyl]amino]-3-hydroxybutanoic acid (1)
(2S,3S)-alpha-Amino-beta-merthyl-n-valerate (1)
(2S,3S,4R)-2-aminohexadecane-1,3,4-triol (1)
(3R)-3-[(Z)-octadec-9-enoyl]oxy-4-(trimethylazaniumyl)butanoate (1)
(3R,3'S)-3,3'-Dihydroxy-beta,beta-carotene-4,4'-dione (1)
(3S,6S)-3-Benzyl-6-(2-methylpropyl)piperazine-2,5-dione (1)
(4S)-4-amino-5-[[(1S)-1-carboxyethyl]amino]-5-keto-valeric acid (1)
(6R)-6-[(3R,5S,7R,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]-2-methylheptanoic acid (1)
(9Z)-octadec-9-enamide (1)
(9Z,12Z)-octadeca-9,12-dienoic acid [1-(anilinomethyl)-2-[(9Z,12Z,15Z)-octadeca-9,12,15-trienoyl]oxy-ethyl] ester (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (4)
Unknown experiment type (1)
RNA-seq of coding RNA (1)

Release Date

2013 (4)
2007 (2)
2022 (2)
2015 (1)
2024 (1)
2021 (1)
2020 (1)
2019 (1)
2016 (1)

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Diffusion of methane in supercritical carbon dioxide across the Widom line.

Not available

S-EPMC6560060 | biostudies-literature

Therapeutic interference with mTorc1 restricts inflammation-associated and Stat3-dependent gastro-intestinal tumourigenesis in mice

Gp130 receptor engagement on neoplastic cells provides a link by which an inflammatory microenvironment facilitates tumour promotion. Although hyperactivation of the gp130-dependent Stat3 signalling node is commonly observed in solid tumours, Stat3 remains a challenging therapeutic target. To mimic ...

ORGANISM(S): Mus musculus

2013-01-29 | E-GEOD-35808 | biostudies-arrayexpress

Tissue-specific transcriptomics, chromosomal localization, and phylogeny of chemosensory and odorant binding proteins from the red flour beetle Tribolium castaneum reveal subgroup specificities for olfaction or more general functions

Chemoreception is based on the senses of smell and taste that are crucial for animals to find new food sources, shelter, and mates. The initial step in olfaction involves the translocation of odorants from the periphery through the aqueous lymph of the olfactory sensilla to the odorant receptors by ...

ORGANISM(S): Tribolium castaneum

2015-03-01 | E-GEOD-63162 | biostudies-arrayexpress

Systematic analysis of membrane contact sites in Saccharomyces cerevisiae uncovers modulators of cellular lipid distribution.

Not available

S-EPMC9648973 | biostudies-literature

Experimental and computational approaches for deep metabolome annotation with application to the ecotoxicological model organism Daphnia magna

Identifying metabolomes with greater coverage and confidence is a critical step towards interpreting the metabolic basis of human and environmental health. Yet for over two decades the field of metabolomics has been inhibited by limited metabolite identification. To address this, we developed the...

MTBLS2273 | MetaboLights

Cell physiology of the biotechnological relevant bacterium Bacillus pumilus-an omics-based approach.

Data from ProteomeXchange, PXD ID: PXD000780. Experiment: O2_U1_gmr_sh_11_1, file: 100223_O2_U1_gmr_sh_11_1_4.mzml. Published as part of J Biotechnol. 2014 Dec 20;192 Pt A:204-14 . From the Abstract: {{i}} Members of the species Bacillus pumilus get more and more in focus of the biotechnological in...

ORGANISM(S): Crap, Bacillus_pumilus_safr_032

GPM32310018327 | GPMDB

Resource Reanalysis

Transcription profiling of mice heart tissue treated with tetrahydrobiopterin compounds

Tetrahydrobiopterin compounds prolong allograft survival independent of their effect on nitric oxide synthase activity

ORGANISM(S): Mus musculus

2007-12-04 | E-GEOD-1809 | biostudies-arrayexpress

Garde2020 - metabolic oscillations in Bacillus subtilis biofilms

Ravindra Garde, Bashar Ibrahim & Stefan Schuster. Extending the minimal model of metabolic oscillations in Bacillus subtilis biofilms. Scientific Reports 10, 1 (2020). Biofilms are composed of microorganisms attached to a solid surface or floating on top of a liquid surface. They pose challenges in...

2024-09-02 | BIOMD0000001053 | BioModels

Array-CGH screening of pediatric low-grade astrocytomas (n=66)

DNA copy-number profiling of 66 astrocytomas of WHO °I or °II Comparison of tumor DNA (tumor) versus control DNA (pool of lymphocyte DNA from 10 healthy donors). Whole-genome screening for DNA copy-number aberrations using array-based comparative genomic hybridization (aCGH). Tumor DNA labeled in Cy...

ORGANISM(S): Homo sapiens

2007-08-10 | E-GEOD-8737 | biostudies-arrayexpress

A comprehensive gene expression analysis of resistance formation upon metronomic cyclophosphamide therapy

Resistance formation is one of the major hurdles in cancer therapy. Metronomic anti-angiogenic treatment of xenografted prostate cancer tumors in SCID mice with cyclophosphamide (CPA) results in the appearance of resistant tumors. To investigate the complex molecular changes occurring during resista...