Eukaryote - OmicsDI

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Unknown (1743)
Genomics (697)
Transcriptomics (591)
Proteomics (148)
Other (20)
Metabolomics (16)
Methylation profiling (3)
Models (2)
Multiomics (2)

Organisms

Homo sapiens (131)
Saccharomyces cerevisiae (125)
Mus musculus (84)
Arabidopsis thaliana (80)
Schizosaccharomyces pombe (35)
Drosophila melanogaster (23)
Caenorhabditis elegans (13)
Trypanosoma brucei (11)
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Oryza sativa (7)
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Danio rerio (6)
Halobacterium salinarum (5)
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Saccharomyces cerevisiae SK1 (3)
Yarrowia lipolytica (3)
Oryza sativa Japonica Group (3)
Neurospora crassa (3)
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Zea mays subsp. mays (2)
Ciona intestinalis (2)
Apis mellifera (2)
Bos taurus (2)
Triticum aestivum (2)
Sus scrofa (2)
Phaeobacter inhibens (1)

Organisms

Saccharomyces cerevisiae (52)
Leishmania major (26)
Leishmania tropica (23)
Homo sapiens (23)
Mus musculus (19)
uncultured eukaryote (18)
marine metagenome (15)
uncultured aquatic eukaryote (8)
uncultured marine eukaryote (8)
Tetrahymena thermophila (8)
feces metagenome (7)
Arabidopsis thaliana (7)
soil metagenome (7)
uncultured soil eukaryote (6)
synthetic metagenome (6)
uncultured phototrophic eukaryote (5)
Schizosaccharomyces pombe (5)
seawater metagenome (5)
Toxoplasma gondii (5)
uncultured freshwater eukaryote (4)
Medicago truncatula (4)
uncultured marine phototrophic eukaryote (3)
Paramecium tetraurelia (3)
Drosophila melanogaster (3)
Streptococcus pyogenes (3)
marine sediment metagenome (3)
Pseudoechria curvicolla (2)
Coprinopsis sclerotiger (2)
Ephemerocybe pellucida (2)
Gecarcinus lateralis (2)

Repository

ENA (633)
biostudies-arrayexpress (529)
geo (148)
pride (79)
MassIVE (29)
jPOST (22)
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iProX (8)
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NODE (3)
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BioModels (1)
Cell Collective (1)
GNPS (1)
PAXDB (1)

Tissue

Cell culture (7)
Permanent cell line cell (6)
Trophozoite (3)
Binucleate cell (2)
Whole body (2)
Binucleate (1)
Bursa of Fabricius (1)
Cell line cell (1)
Ciliated cell (1)
Cumulus cell (1)
Leaf (1)
Plant cell (1)
Root (1)
Single nucleate cell (1)

Disease

Giardiasis (5)
Trypanosomiasis (2)
Benign meningioma (1)
Dukes D primary colon cancer (1)
Colon cancer metastasis (1)
Benign adenoma (1)
Disease free (1)
Plasmodium falciparum malaria (1)
Sleeping sickness (1)
Toxoplasmosis (1)

Technology Type

Mass Spectrometry (79)
Shotgun proteomics (49)
Bottom-up proteomics (16)
Mass spectrometry (10)
Affinity purification coupled with mass spectrometry proteomics (9)
Gel-based experiment (8)
Data-dependent acquisition (7)
Mass spectrometry assay (5)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
SRM/MRM (2)
Data-independent acquisition (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (13)
Ion Torrent Proton (9)
Illumina HiSeq 2500 (7)
AB SOLiD 4 System (6)
Illumina Genome Analyzer IIx (6)
Illumina NovaSeq 6000 (6)
NextSeq 500 (6)
Axon GenePix 4000B scanning hardware (3)
Illumina HiSeq 4000 (3)
RiboZero (2)
Trizol (Invitrogen); FastPrep (MP Biochemicals) (2)
DASGIP bioreactors (2)
Intel Xeon E5-2660 (128G RAM) (2)
Illumina MiSeq (2)
Illumina TruSeq Stranded Total RNA kit, Biomek FxP (Beckman Coulter) (1)
Agilent Bioanalyzer 2100 system (Agilent Technologies, California, USA) (1)
Microcentrifuge (1)
Agilent 2100 Bioanaylze (1)
Qubit 2.0, Agilent 2100 (1)
Affymetrix Genechip scanner 3000 (1)
Affymetrix Genechip hybridisation oven 650 (1)
Axon GenePix 4000A scanning hardware (1)
ScanArray scanning hardware (1)
Agilent 2100 Bioanalyzer (1)
DNA Microarray Scanner BA [Agilent Technologies] (1)
418 [Affymetrix] (1)
ScanArray Express HT [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Vortex (1)

Publication Date

2014 (73)
2013 (73)
2011 (67)
2016 (64)
2015 (58)
2010 (57)
2012 (54)
2008 (44)
2007 (42)
2024 (40)
2023 (34)
2021 (30)
2025 (28)
2017 (26)
2009 (26)
2022 (22)
2020 (22)
2019 (20)
2026 (14)
2018 (14)
2006 (14)
2005 (11)
2004 (4)

UNIPROT ID/AC

128UP_DROME (1)
140U_DROME (1)
1433E_DROME (1)
1433Z_DROME (1)
18C_DROME (1)
2AAA_DROME (1)
2ABA_DROME (1)
3BP5H_DROME (1)
3HIDH_DROME (1)
41_DROME (1)
5HT2A_DROME (1)
5NT3B_DROME (1)
60A_DROME (1)
6PGD_DROME (1)
6PGL_DROME (1)
7227.FBpp0070052 (1)
7227.FBpp0070054 (1)
7227.FBpp0070575 (1)
7227.FBpp0071052 (1)
7227.FBpp0073589 (1)
7227.FBpp0074613 (1)
7227.FBpp0074882 (1)
7227.FBpp0076702 (1)
7227.FBpp0076767 (1)
7227.FBpp0077066 (1)
7227.FBpp0077462 (1)
7227.FBpp0078238 (1)
7227.FBpp0079696 (1)
7227.FBpp0080317 (1)
7227.FBpp0080495 (1)

CHEBI ID

CHEBI:18012 (4)
CHEBI:15721 (3)
CHEBI:16680 (3)
CHEBI:16856 (3)
CHEBI:15356 (3)
CHEBI:18186 (3)
CHEBI:16708 (3)
CHEBI:25017 (3)
CHEBI:15428 (3)
CHEBI:16610 (3)
CHEBI:15741 (3)
CHEBI:6650 (3)
CHEBI:28044 (3)
CHEBI:7916 (3)
CHEBI:16015 (3)
CHEBI:16027 (3)
CHEBI:30915 (3)
CHEBI:16189 (2)
CHEBI:86468 (2)
CHEBI:32650 (2)
CHEBI:22605 (2)
CHEBI:21949 (2)
CHEBI:45441 (2)
CHEBI:45658 (2)
CHEBI:18095 (2)
CHEBI:17992 (2)
CHEBI:32365 (2)
CHEBI:30653 (2)
CHEBI:17256 (2)
CHEBI:17822 (2)

Metabolite Name

Tryptophan (3)
Serine (3)
Lysine (3)
Cysteine (3)
Cystathionine (3)
Arginine (3)
Adenine (3)
Histidine (3)
Phenylalanine (3)
Tyrosine (3)
Threonine (3)
Glutamine (3)
Alanine (3)
Valine (3)
Isoleucine (3)
Leucine (3)
Glycine (3)
S-adenosylmethionine (2)
Arabitol (2)
Sedoheptulose-7-phosphate (2)
Homoserine (2)
Pantothenic acid (2)
Glutamic acid (2)
Aspartic acid (2)
Xylitol (2)
Phenylpyruvate (2)
N-formylmethionine (2)
N-acetylalanine (2)
Indolelactate (2)
Pyridoxal (2)

First Public Date

2018 (85)
2014 (66)
2017 (57)
2013 (51)
2025 (50)
2023 (49)
2020 (49)
2024 (43)
2021 (38)
2022 (36)
2026 (33)
2016 (30)
2019 (26)
2015 (18)
2012 (2)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Professor of Genomic Evolution, School of Medicine, Conway Institute of Biomolecular and Biomedical Research, University College Dublin Belfield Dublin 4 (11)
MPI for Biochemistry (2)
Population Health and Immunity Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Melbourne, VIC, Australia (2)
Sequence database group (2)
1 Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia (1)
1. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany, 2. Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, United Kingdom (1)
4Cellular Proteome Research, Helmholtz Centre for Infection Research, Braunschweig, Germany (1)
Assistant professor, Department of intenal medicine, divsion of infectious disease and international medicine, Morsani College of Medicine, University of South Florida (1)
Basic Sciences, College of Veterinary Medicine (1)
Biological and Environmental Proteomics, Institute of Biomedical Research of Barcelona, Spanish National Research Council (IIBB-CSIC/IDIBAPS), Rosellón 161, E-08036 Barcelona, Spain. (1)
Biomedical & Life Sciences, Lancaster University UK (1)
Biotechnology, Applied Sciences, Delft University of Technology (1)
Biozentrum, University of Basel, Switzerland (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
CNRS UMR 7178 IPHC-DSA-LSMBO (1)
Core facility for mass spectrometry and proteomics ZMBH, University Heidelberg Im Neuenheimer Feld 282 D-69120 Heidelberg (1)
Dalhousie University (1)
Departamento de Genética Molecular, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Mexico City, Mexico. (1)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, Germany (1)
Department of Biological Sciences and the Center for Emerging, Zoonotic, and Arthropod-Borne Pathogens, Virginia Tech, Blacksburg, VA (1)
Department of Biology, University of Washington (1)
Department of Geoscience, University of Calgary, Calgary, AB, Canada; Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA (1)
Department of Internal Medicine, Morsani College of Medicine, University of South Florida (1)
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, 7610001, Israel (1)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans KnÃ¶ll Institute Jena (Leibniz-HKI) Jena, Germany (1)
Department of Parasitology, Faculty of Science, BIOCEV, Charles University, 149 00 Czech Republic (1)
Department of Parasitology, Faculty of Science, Charles University BIOCEV, Průmyslová 595, 252 50 Vestec, Czech Republic (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic (1)
Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA (1)
Department of Veterinary Sciences, Experimental Parasitology Ludwig-Maximilians-Universität München Leopoldstr. 5 80802 Munich Germany Biomedical Center Munich, Physiological Chemistry Ludwig-Maximilians-Universität München Großhaderner Str. 9 82152 Planegg-Martinsried Germany (1)

Tags

pathogen (84)
pathogen:protozoan (71)
pathogen:bacterium (9)
xref:PubMed:38151016 (5)
xref:PubMed:35210361 (3)
xref:PubMed:28275002 (3)
xref:PubMed:28569170 (3)
pathogen:fungus (3)
xref:PubMed:28329689 (2)
xref:PubMed:32086247 (2)
xref:PubMed:29788176 (2)
xref:PubMed:38514187 (2)
xref:PubMed:20519413 (2)
xref:PubMed:19965468 (2)
xref:PubMed:19965477 (2)
xref:PubMed:19965476 (2)
xref:PubMed:12854720 (2)
xref:PubMed:21730963 (2)
xref:PubMed:38747593 (2)
xref:PubMed:19096707 (2)
xref:ArrayExpress:E-MTAB-1154 (1)
xref:ArrayExpress:E-MTAB-4768 (1)
xref:PubMed:25607527 (1)
xref:PubMed:21784248 (1)
xref:PubMed:42613035 (1)
xref:PubMed:30429611 (1)
xref:PubMed:34792171 (1)
xref:PubMed:36098532 (1)
xref:PubMed:34064887 (1)
xref:PubMed:34125917 (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

protozoa (71)
bacteria (9)
fungi (3)
viruses (1)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (198)
RNA-seq of coding RNA (155)
RNA-seq of non coding RNA (34)
ChIP-chip by tiling array (30)
ChIP-seq (28)
Other (26)
ChIP-chip by array (13)
RIP-seq (6)
Transcription profiling by tiling array (5)
Methylation profiling by high throughput sequencing (5)
Animal - High-throughput sequencing (4)
DNA-seq (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
Translation profiling (2)
High-throughput sequencing (2)
RNAi profiling by array (2)
RNA-seq of total RNA (2)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Hi-C (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2014 (153)
2013 (150)
2015 (141)
2011 (138)
2016 (134)
2012 (132)
2021 (124)
2022 (119)
2017 (115)
2019 (108)
2020 (105)
2023 (104)
2024 (101)
2010 (101)
2018 (98)
2008 (86)
2025 (71)
2009 (64)
2007 (53)
2006 (52)
2005 (33)
2004 (26)
2003 (17)
2000 (13)
2026 (8)
2002 (8)
2001 (8)
1999 (3)
1998 (3)
1997 (2)

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Growth control of the eukaryote cell: a systems biology study in yeast

Metabolic control analysis is being exploited in a systems biology study of the eukaryotic cell. Using chemostat culture, we have measured the impact of changes in flux (growth rate) on the transcriptome, proteome, endometabolome and exometabolome of the yeast Saccharomyces cerevisiae. Each function...

2012-04-19 | MTBLS8 | MetaboLights

Extreme genome diversity and cryptic speciation in a harmful algal bloom forming eukaryote

Harmful algal blooms (HABs) of the toxic haptophyte Prymnesium parvum are a recurrent problem in many inland and estuarine waters around the world. Strains of P. parvum vary in the toxins they produce and in other physiological traits associated with HABs, but the genetic basis ...

2023-04-26 | MTBLS5893 | MetaboLights

eukaryote Raw sequence reads

PRJNA832073 | ENA

Eukaryote Raw sequence reads

PRJNA848982 | ENA

uncultured eukaryote

uncultured eukaryote overview

PRJNA78063 | ENA

uncultured eukaryote

uncultured eukaryote Raw sequence reads

PRJNA341446 | ENA

Hemiculter leucisculus strain:eukaryote

Hemiculter leucisculus strain:eukaryote Genome sequencing

PRJNA1303376 | ENA

Eukaryote in lake water

Eukaryote in lake water Raw sequence reads

PRJNA818786 | ENA

uncultured aquatic eukaryote

uncultured aquatic eukaryote overview

PRJNA384084 | ENA

uncultured aquatic eukaryote

uncultured aquatic eukaryote Metagenome

PRJNA319394 | ENA

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