F Rice R - OmicsDI

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Unknown (1765)
Transcriptomics (114)
Proteomics (32)
Genomics (22)
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Oryza sativa (43)
Homo sapiens (22)
Oryza sativa Japonica Group (15)
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Arabidopsis thaliana (6)
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Organisms

soil metagenome (3)
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biostudies-arrayexpress (117)
pride (26)
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Disease

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Mass Spectrometry (26)
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Illumina Human 1.2M Duo custom BeadChips v1 - Genome Studio, Illumina Human 660K Quad BeadChips - Illuminus, Illumina Human-Ref 8 v3.0 expression array (1)
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Publication Date

2010 (28)
2014 (21)
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2011 (12)
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CHEBI ID

CHEBI:15741 (7)
CHEBI:16610 (6)
CHEBI:16704 (6)
CHEBI:16750 (6)
CHEBI:16865 (6)
CHEBI:17992 (6)
CHEBI:18012 (6)
CHEBI:18186 (6)
CHEBI:18237 (6)
CHEBI:22653 (6)
CHEBI:24898 (6)
CHEBI:25017 (6)
CHEBI:27266 (6)
CHEBI:28044 (6)
CHEBI:28300 (6)
CHEBI:14314 (5)
CHEBI:15428 (5)
CHEBI:15676 (5)
CHEBI:15756 (5)
CHEBI:15940 (5)
CHEBI:16040 (5)
CHEBI:16119 (5)
CHEBI:16335 (5)
CHEBI:16449 (5)
CHEBI:16709 (5)
CHEBI:16811 (5)
CHEBI:17509 (5)
CHEBI:17620 (5)
CHEBI:17750 (5)
CHEBI:17822 (5)

Metabolite Name

Valine (5)
Leucine (4)
Serine (4)
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First Public Date

2026 (5)
2023 (1)
2019 (1)

Classification

fungi (1)

Study type

Transcription profiling by array (92)
RNA-seq of coding RNA (10)
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Release Date

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Lab affiliation

Yazhouwan National Laboratory, Sanya 572024, China (3)
IMB, Ackermannweg 4, 55128 Mainz (2)
Canary Center at Stanford for Cancer Early Detection Department of Radiology Stanford University School of Medicine (1)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (1)
College of Life Sciences, Hunan Normal University (1)
College of Life Sciences, Hunan Normal University, Changsha 410081, China (1)
Department of Biosciences, University of Milan, Via Celoria 26, 20133, Milan (Italy) (1)
Department of Microbiology Guru Nanak Dev University Amritsar 143005 Punjab India (1)
Department of Molecular & Cellular Physiology Stanford University School of Medicine (1)
Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000 Ghent, Belgium (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (1)
Environmental Toxicology, University of California Davis (1)
Key Laboratory of Ministry of Education for Genetic Improvement and Comprehensive Utilization of Crops, Fujian Provincial Key Laboratory of Crop Breeding by Design, College of Agriculture, Fujian Agriculture and Forestry University (1)
Key laboratory of Research and Development for Resource Plant, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China (1)
Kihara Institute for Biological Research, Yokohama City University (1)
Plant Science, University of Cambridge, UK (1)
Shanghai Ocean University (1)
St. Giles Laboratory of Human Genetics of Infectious Diseases, The Rockefeller University, New York, New York, USA. (1)
State Key Lab of Plant Genomics Institute of Genetics and Developmental Biology Chinese Academy of Sciences, Beijing 100101, China Chaoyang District, Beichen West Road, Campus #1, No. 2 (1)
Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Science, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, China (1)
University of California Davis, College of Agricultural and Envirnmental Sciences, Environmental Toxicology (1)
University of Cambridge (1)
cau (1)

Tags

pathogen:fungus (1)
pathogen (1)

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Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development (LC-MS pos assay)

Seed development dedicates to reserve synthesis and accumulation and uncovering its genetic and biochemical mechanisms has been a major research focus. Although proteomic and transcriptomic analyses revealed dynamic changes of genes and enzymes involved, the information regarding concomitant meta...

2016-05-03 | MTBLS286 | MetaboLights

Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development (LC-MS neg assay)

2016-05-03 | MTBLS287 | MetaboLights

Quantitative 1H NMR metabolome profiling of Thai Jasmine rice (Oryza sativa) reveals primary metabolic response during brown planthopper infestation

Brown planthopper (BPH; Nilaparvata lugens) is a phloem feeding insect which is one of the most serious threats to rice crops in many countries throughout Asia. 1H NMR spectroscopy, combined with chemometrics, was used to analyze the polar metabolome from leaf extracts of Thai Jasmine rice (brown pl...

2016-11-25 | MTBLS151 | MetaboLights

Metabolic responses of rice cultivars with different tolerance to combined heat and drought stress under field conditions

Rice is susceptible to both heat and drought stress, in particular during flowering and grain filling, when both grain yield and quality may be severely compromised. However, under field conditions, these two stresses rarely occur separately. Under well-watered conditions, plants avoid heat stress b...

2019-04-25 | MTBLS801 | MetaboLights

The Polycomb Group Gene EMF2B is required for meristem determinacy and organ specification in rice flowers.

The Polycomb Repressive Complex 2 (PRC2) represses the transcriptional activity of target genes through trimethylation of Lysine 27 of Histone H3. The functions of the plant PRC2 have been chiefly described in Arabidopsis but specific PRC2 functions in other plant species, especially the cereals, ar...

ORGANISM(S): Oryza sativa Japonica Group

2014-10-31 | E-GEOD-49633 | biostudies-arrayexpress

Control of agricultural traits by hc-siRNA associated MITEs in rice

Transposable elements (TEs) and repetitive sequences comprise over 40% of rice genome. Different TEs are tightly regulated by distinct epigenetic mechanisms. For example, the activities of LTR retrotransposon Tos17 and non-LTR retrotransposon LINE element Karma are uniquely regulated by histone H3K9...

ORGANISM(S): Oryza sativa Japonica Group

2014-02-04 | E-GEOD-50778 | biostudies-arrayexpress

Rice gene global expression during nonhost interaction with Blumeria graminis f. sp. hordei (Bgh)

Powdery mildew is a very common plant disease and only few plants are immune. Host interactions have been identified and characterized for the pathosystems barley-B. graminis f. sp. tritici (Bgt) and wheat-B. graminis f. sp. hordei (Bgh), whereas no data are reported about powdery mildew and nonhost...

ORGANISM(S): Oryza sativa

2012-03-26 | E-GEOD-30942 | biostudies-arrayexpress

Rice expression atlas (1): Anther development

Gene expression throughout the reproductive process in rice (Oryza sativa) beginning with primordia development through pollination/fertilization to zygote formation was analyzed. We analyzed 25 stages/organs of rice reproductive development including early microsporogenesis stages with 57,381 probe...

ORGANISM(S): Oryza sativa

2010-11-11 | E-GEOD-13988 | biostudies-arrayexpress

Rice expression atlas (3): Early embryogenesis

ORGANISM(S): Oryza sativa

2010-11-11 | E-GEOD-14299 | biostudies-arrayexpress

Differential expression for rice-gall midge interaction

We exposed Kavya rice seedlings to different gall midge biotypes, GMB1 and GMB4M, which exhibit incompatible and compatible interactions, respectively. Expression study in Kavya seedlings using pooled samples of stem meristematic tissues 24, 48, 96, and 120 hr after GMB1 and GMB4M infestation when c...

ORGANISM(S): Oryza sativa

2011-11-16 | E-GEOD-22538 | biostudies-arrayexpress

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