Falcon Ana A - OmicsDI

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Transcriptomics (14)
Proteomics (4)
Metabolomics (3)
Unknown (1)

Organisms

Mus musculus (5)
Homo sapiens (5)
Staphylococcus aureus subsp. aureus COL (1)
Xylella fastidiosa (1)
Pseudomonas putida (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Caenorhabditis elegans (1)
Pseudomonas citronellolis (1)
Saccharomyces cerevisiae (1)
Simplicispira hankyongi (1)

Repository

biostudies-arrayexpress (14)
pride (4)
MetaboLights (3)

Tissue

Cell suspension culture (1)
Whole body (1)

Technology Type

Mass Spectrometry (4)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Metaproteomics (1)
Shotgun proteomics (1)

Instrument Platform

LECO Pegasus 4D (2)
AB SOLiD 4 System (1)
ScanArray Lite [PerkinElmer] (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
MS Imaging - (1)

Publication Date

2022 (3)
2013 (3)
2011 (3)
2024 (2)
2015 (2)
2014 (1)
2009 (1)
2008 (1)
2007 (1)
2004 (1)
2025 (1)
2021 (1)
2026 (1)

CHEBI ID

CHEBI:15428 (2)
CHEBI:15603 (2)
CHEBI:15756 (2)
CHEBI:16000 (2)
CHEBI:16010 (2)
CHEBI:16015 (2)
CHEBI:16113 (2)
CHEBI:16414 (2)
CHEBI:16695 (2)
CHEBI:16865 (2)
CHEBI:16958 (2)
CHEBI:16977 (2)
CHEBI:16988 (2)
CHEBI:17053 (2)
CHEBI:17113 (2)
CHEBI:17115 (2)
CHEBI:17148 (2)
CHEBI:17191 (2)
CHEBI:17203 (2)
CHEBI:17268 (2)
CHEBI:17295 (2)
CHEBI:17345 (2)
CHEBI:17369 (2)
CHEBI:17393 (2)
CHEBI:17568 (2)
CHEBI:17634 (2)
CHEBI:17754 (2)
CHEBI:17895 (2)
CHEBI:18012 (2)
CHEBI:18240 (2)

Metabolite Name

1-Ethyl-2-propylcyclohexane 2 (2)
1-Iodo-2-methylundecane (2)
1-Nonene, 4,6,8-trimethyl- (2)
11-Methyl-1-dodecanol (2)
2,6,10,15-tetramethylheptadecane (2)
2-(4-Methyl-1-piperazinyl)ethanamine (2)
3,7,11-Trimethyl-1-dodecanol (2)
3,7-Dimethyl-3-octanol (2)
3,8-dimethylundecane (2)
4,6-Dimethyldodecane (2)
4-Hydroxy-L-proline (2)
Benzoic acid (2)
Beta-Alanine (2)
Boric acid (2)
Caprylic acid (2)
Carbodiimide (2)
Cholesterol (2)
Citric acid (2)
D-Allose (2)
D-Psicose (2)
D-Ribose (2)
Diacetone alcohol (2)
Erythritol (2)
Erythronic acid (2)
Ethanolamine (2)
Fumaric acid (2)
Gamma-Aminobutyric acid (2)
Glycerol (2)
Glycine (2)
Guanosine monophosphate (2)

Study type

Transcription profiling by array (10)
RNA-seq of coding RNA from single cells (2)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA (1)

Release Date

2013 (3)
2011 (3)
2022 (2)
2004 (2)
2024 (1)
2014 (1)
2009 (1)
2008 (1)
2007 (1)

Lab affiliation

Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium VIB Center for Plant Systems Biology, Ghent, Belgium (1)
Dept. of Microbial and Cellular Sciences Faculty of Health and Medical Sciences University of Surrey Stag Hill Campus 19 AX 01 Guildford, GU2 7XH U.K. (1)
Max Delbrück Center for Molecular Medicine in the Helmholtz Association (1)
Nowergian Univeristy of Life Sciences (1)

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Transcription profiling of Pseudomonas putida strains with wild type and inactivated cyoB alleles

Transcriptome comparison of two isogenic strains, one with a wild type cyoB allele and another with an inactivated cyoB allele

ORGANISM(S): Pseudomonas putida

2022-11-21 | E-MEXP-639 | biostudies-arrayexpress

Bacillithiol as Part of the Response of Staphylococcus aureus to Oxidative Stress

Overnight cultures of wild type COL or the bshA mutant were back-diluted to an O.D.650 of 0.1 in 30 mL of TSB. The cells were grown at 37C with shaking in a 300mL flask until they reached an O.D.650 of 1.1. The cells were then equally separated into 50mL Falcon tubes, so that each tube had 10mL of c...

ORGANISM(S): Staphylococcus aureus subsp. aureus COL

2013-11-12 | E-GEOD-46885 | biostudies-arrayexpress

RNA-associated to Urinary Vesicles as a Suitable Non-invasive Source for Diagnostic Purposes in Bladder Cancer

Bladder cancer is one of the most common cancers. Since prognosis ameliorates with early detection, it is a challenge to develop techniques that could replace or complement the current diagnosis protocols. The study of extracellular vesicles (EVs) that are present in urine samples has become an attr...

ORGANISM(S): Homo sapiens

2014-01-29 | E-GEOD-51843 | biostudies-arrayexpress

Blocking HIV-1 infection via CCR5 and CXCR4 receptors by acting in trans on the CCR2 chemokine receptor.

Not available

S-EPMC1271658 | biostudies-literature

Comparative genomic hybridization of Xylella fastidiosa 9a5c (pathogenic, reference strain) and J1a12 (non-pathogenic)

Comparison of genomic DNA from two strains of Xylella fastidiosa: 9a5c (pathogenic, reference strain) and J1a12 (non-pathogenic).

ORGANISM(S): Xylella fastidiosa

2004-04-01 | E-MEXP-22 | biostudies-arrayexpress

Distinct metabolic responses of an ovarian cancer stem cell line

Background

Cancer metabolism is emerging as an important focus area in cancer research. However, the in vitro cell culture conditions under which much cellular metabolism research is performed differ drastically from in vivo tumor conditions, which are characterized by variations in the leve...

2021-11-05 | MTBLS150 | MetaboLights

OVCAR-3 spheroid-derived cells display distinct metabolic profiles

Recently, multicellular spheroids were isolated from a well-established epithelial ovarian cancer cell line, OVCAR-3, and were propagated in vitro. These spheroid derived cells displayed numerous hallmarks of cancer stem cells, which are chemo and radioresistant cells thought to be a significant cau...

2015-01-08 | MTBLS152 | MetaboLights

Cell-intrinsic metabolic phenotypes identified in glioblastoma patients using mass spectrometry imaging of 13C-labeled glucose metabolism

Transcriptomic studies attempted to classify glioblastoma (GB) into subtypes that predict survival and that have different therapeutic vulnerabilities1-3. Here we identified three metabolic subtypes: glycolytic, oxidative and a mixed glycolytic/oxidative by mass spectrometry imaging of rapidly ex...

2025-05-08 | MTBLS12176 | MetaboLights

Transcriptome analysis of murine thymocytes reveals age-associated changes in thymic gene expression

The decline in adaptive immunity, naïve T-cell output and a contraction in the peripheral T cell receptor (TCR) repertoire with age are largely attributable to thymic involution and the loss of critical cytokines and hormones within the thymic microenvironment. To assess the molecular changes associ...

ORGANISM(S): Mus musculus

2009-05-05 | E-GEOD-15945 | biostudies-arrayexpress

Gene expression and lung tumors: screening for markers that discriminate tumor histology and genetic background.

The success of targeted therapies creates a need to discriminate tumors accurately by their histological and genetic characteristics. Here, we used cDNA microarray analysis to identify gene expression profiles and single markers that recapitulate the pathological and genetic background (i.e., BRAF, ...