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ProteomicsExtremely fast and accurate open modification spectral library searching of high-resolution mass spectra using feature hashing and graphics processing units
Open modification searching (OMS) is a powerful search strategy to identify peptides with any type of modification. OMS works by using a very wide precursor mass window to allow modified spectra to match against their unmodified variants, after which the modification types can be inferred from the c...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2019-12-06 | PXD013641 | Pride
Proteomics Graphics processing unit Post-translational modification Mass spectrometry Feature hashing Approximate nearest neighbor indexing Spectral library Open modification searching 
UnknownExtremely Fast and Accurate Open Modification Spectral Library Searching of High-Resolution Mass Spectra Using Feature Hashing and Graphics Processing Units.
Not available
S-EPMC6886738 | biostudies-literature
UnknownLocality-preserving minimal perfect hashing of k-mers.
Not available
S-EPMC10311298 | biostudies-literature
UnknownDeep hashing for global registration of preoperative CT and video images for laparoscopic liver surgery.
Not available
S-EPMC12226707 | biostudies-literature
TranscriptomicsSingle cell RNA sequencing of lung dendritic cells in healthy and hyperglycemic mice
We performed single cell RNAseq to measure gene expression in different subsets of lung dendritic cells hyperglycaemic mice. We used streptozotocin model to achieve hyperglycaemia. Each sample contains cells from 4 different mice and hashing was done to allow disentangling which cell comes from whic...
ORGANISM(S): Mus musculus 
2023-06-29 | E-MTAB-11393 | biostudies-arrayexpress
UnknownDeep hashing for global registration of untracked 2D laparoscopic ultrasound to CT.
Not available
S-EPMC9307559 | biostudies-literature
TranscriptomicsLung Immune Cells in Wildtype and Cela1-/- Mice 21 Days After Tracheal Porcine Pancreatic Elastase
8-10 week old wildtype and Cela1-/- in C57BL6 background were treated with 2 units of tracheal porcine pancreatic elastase or PBS and on day 21 lungs were collected, flow sorted, and libraries created from lung cells of 3 mice per group using 10X Chromium controller and cellplex lipid hashing oligos...
ORGANISM(S): Mus musculus 
2022-09-23 | E-MTAB-12097 | biostudies-arrayexpress
UnknownEnhancing machine learning-based sentiment analysis through feature extraction techniques.
Not available
S-EPMC10866497 | biostudies-literature
TranscriptomicsMulti-omics analysis of human bone marrow across fetal and adult stages informs strategies for in vitro B lymphopoiesis - scRNA-seq dataset
These samples are part of a study aimed at understanding B lymphopoiesis in the human bone marrow throughout the lifespan and guiding in vitro B lymphopoiesis. This dataset contains transcriptomic data from prenatal and adult bone marrow samples, as well as in vitro experiments, together with the co...
ORGANISM(S): Homo sapiens 
2026-09-11 | E-MTAB-17252 | biostudies-arrayexpress
TranscriptomicsMapping T cell responses to native and neo- islet antigen epitopes in at risk and type 1 diabetes subjects
Gene expression and T cell receptor profiles from single cells from populations of T cells stimulated with islet autoantigenic peptides. CD4 T cells were stimulated with native (proinsulin, GAD fragments) or neo-antigen epitopes or flu vaccine (Pediacel). Activated cells (identified as CD19- CD3+ C...
ORGANISM(S): Homo sapiens 
2021-05-29 | E-MTAB-10323 | biostudies-arrayexpress
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