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TranscriptomicsGeneration of transcriptome catalogs for global analysis of gene expression in non-model organisms
We have developed a method based on 454 sequencing of 3â?? cDNA fragments from a normalized library constructed from pooled RNAs to generate, through de novo reads assembly, a large catalog of unique transcripts in organisms for which a comprehensive collection of transcripts or the complete genome ...
ORGANISM(S): Vitis vinifera 
2010-06-25 | E-GEOD-14276 | biostudies-arrayexpress
TranscriptomicsRNAs expression profiling in a resistant and a susceptible grapevine cultivar to Plasmopara viticola
Plasmopara viticola (Berk. and Curt.) Berl. and de Toni is the agent of the destructive disease known as grapevine downy mildew, for the control of which intensive fungicide treatments are required. Natural sources of resistance are available in several wild Vitis species, which are being used in tr...
ORGANISM(S): Vitis riparia 
2010-06-24 | E-GEOD-18596 | biostudies-arrayexpress
TranscriptomicsThe grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program
The first genome-wide transcriptomic atlas of grapevine (Vitis vinifera) is based on 54 diverse samples expressing ~93% of predicted grapevine genes. Pollen and senescent leaves have unique transcriptomes but microarray analysis grouped all other samples into vegetative/green or mature/woody categor...
ORGANISM(S): Vitis vinifera 
2012-09-10 | E-GEOD-36128 | biostudies-arrayexpress
TranscriptomicsArabidopsis thaliana Growth is Negatively Regulated by the Class III Peroxidase AtPrx71 during Development and in Response to Cell Wall Damage
The cell wall is a crucial structure in plant cells, and modifications in its composition often have a major impact on growth and development. However, the molecular mechanisms responsible for the negative effects of cell wall alterations on plant growth are largely unknown. It was previously shown ...
ORGANISM(S): Arabidopsis thaliana 
2016-01-06 | E-GEOD-66980 | biostudies-arrayexpress
TranscriptomicsExpression and DNA methylation profiles in alcohol-associated hepatocellular carcinoma
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Homo sapiens 
2015-05-04 | E-GEOD-59261 | biostudies-arrayexpress
TranscriptomicsGenome-wide transcriptional Responses to Fusarium oxysporum and Tomato mosaic virus in Tomato
The aim of this study was to compare the tomato global transcriptional profiles in response to host attack by ToMV and Fol in order to identify genomic differences and similarities in incompatible interactions between a foliar and a vascular pathogen. In order to identify a set of genes of interest ...
ORGANISM(S): Solanum lycopersicum 
2015-11-12 | E-GEOD-52336 | biostudies-arrayexpress
TranscriptomicsOverexpression of ENOD40 in Arabidopsis thaliana plants reveals a role of the gene in cell wall turnover and glucosinolate accumulation.
The transcriptional and metabolic profiles of rosettes of three independent Arabidopsis thaliana ecotype Wassiliewska lines overexpressing the soybean early noduline GmENOD40 gene were compared to those of wt, and a biomarker analysis was performed. ENOD40 overexpression resulted in 382 modulated ge...
ORGANISM(S): Arabidopsis thaliana 
2015-05-08 | E-GEOD-37867 | biostudies-arrayexpress
TranscriptomicsExtreme sensitivity of gene expression in human neurocytes SH-SY5Y to ultra-low doses of a medicinal plant with anxiolytic-like properties
Gelsemium sempervirens L. (Gelsemium) is a traditional medicinal plant which at ultra-low doses is employed as anxiolytic and antidepressant, but consistent evidence is lacking and the possible mechanisms involved at the level of nervous system are largely unknown. In this study we have investigated...
ORGANISM(S): Homo sapiens 
2015-11-01 | E-GEOD-42236 | biostudies-arrayexpress
TranscriptomicsExpression profiling in grapevine berry during development and withering processes
Grapevine is a commercially important fruit crop that provides berries for direct consumption, juice pressing, drying (raisins), and fermentation to produce wine. The economic value of the crop has encouraged many researchers to study the physiological and molecular basis of berry development, parti...
ORGANISM(S): Vitis vinifera 
2010-09-24 | E-GEOD-20511 | biostudies-arrayexpress
TranscriptomicsA microarray analysis highlights the role of tetrapyrrole pathways in grapevine responses to stolbur phytoplasma, phloem virus infections and recovered status
Several systemic diseases affect Vitis vinifera worldwide with important consequent management costs. Phytoplasma and viruses represent the most detrimental pathogens inducing symptoms and metabolic alterations that modify quantitatively the crop production. In the aim to investigate the plant/patho...
ORGANISM(S): Vitis vinifera 
2016-02-19 | E-GEOD-52540 | biostudies-arrayexpress
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