Fic enzyme - OmicsDI

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Unknown (220)
Transcriptomics (59)
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Human alphaherpesvirus 1 strain 17 (8)
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Exiguobacterium sp. SH31 (8)
Palaemonetes sp. common grass shrimp associated circular virus (8)
Amaranthus tricolor (8)
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Clavibacter nebraskensis NCPPB 2581 (8)
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Repository

biostudies-arrayexpress (61)
pride (8)
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Prokaryotic cell (2)
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Disease

Normal (2)
Type 1 diabetes mellitus (DM-1) (1)
Pancreatic ductal adenocarcinoma (1)

Technology Type

Mass Spectrometry (8)
Shotgun proteomics (3)
Gel-based experiment (2)
Bottom-up proteomics (2)
Mass spectrometry (1)
Data-dependent acquisition (1)

Instrument Platform

NextSeq 500 (8)
Illumina HiSeq 4000 (4)
Illumina HiSeq 2500 (2)
Bravo automated liquid handling robot station (Agilent) (1)
10X Genomics Chromium Controller (1)
NextSeq 2000 (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Orbitrap Fusion (1)
Q Exactive (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2014 (11)
2015 (7)
2022 (6)
2010 (5)
2024 (4)
2021 (4)
2016 (4)
2013 (4)
2012 (4)
2011 (4)
2020 (3)
2019 (3)
2008 (3)
2026 (3)
2025 (2)
2023 (2)
2009 (2)
2017 (1)
2005 (1)

Metabolite Name

Nonanedioyl-CoA (1)
PA(a-21:0/PGF2alpha) (1)
PE(14:0/20:4(5Z,8Z,11Z,14Z)-OH(16R)) (1)
Beta-D-Xylopyranosyl-(1->3)-alpha-L-arabinofuranosyl-(1->3)-L-arabinose (1)
PIP(22:3(10Z,13Z,16Z)/PGJ2) (1)
PA(10:0/18:1(9Z)-O(12,13)) (1)
Beta-Alanine, N-(N-(1-carboxy-2-phenylethyl)-L-phenylalanyl)-, (S)- (1)
2-(Furan-2-yl)-7-(3-(4-methoxyphenyl)propyl)-7H-pyrazolo[4,3-e][1,2,4]triazolo[1,5-c]pyrimidin-5-amine (1)
Methyl 5-[(E)-1-(3,7-dimethyl-2-oxo-1,3-benzoxazol-5-yl)-6-methoxy-6-oxohex-1-enyl]-2-methoxy-3-methylbenzoate (1)
7-Chloro-N-[3-(2-nitroimidazol-1-yl)propyl]quinolin-4-amine (1)
Cefozopran (1)
PC(20:4(5Z,8Z,11Z,14Z)-OH(18R)/14:1(9Z)) (1)
PC(DiMe(9,5)/20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)) (1)
Gum arabic (1)
N-[4-[(4-Ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-4-methyl-3-(1H-pyrrolo[2,3-b]pyridin-4-yloxy)benzamide (1)
4-Hydroxydecanoyl-CoA (1)
(4-{2-[(4-Carbamimidoyl-benzoyl)-methyl-amino]-acetyl}-2-carboxymethoxy-phenoxy)-acetic acid (1)
N,N-Dimethyl-4-(3-pyridin-4-ylprop-1-enyl)aniline (1)
Nigrosin (1)
Thioglucose (1)
Magnesium carbonate (1)
5-(3',5'-Dihydroxyphenyl)-γ-valerolactone sulfate (1)
DG(20:4(6E,8Z,11Z,13E)-2OH(5S,15S)/i-13:0/0:0) (1)
PA(8:0/PGE2) (1)
PGP(18:2(10E,12Z)+=O(9)/i-20:0) (1)
Tetrahydrothiazine (1)
4-phospho-hydroxy-L-threonine (1)
Pyrrolifene (1)
4-coumaroyl-3',4'-dihydroxyphenyllactate (1)
Pgg-glucan (1)

Study type

Transcription profiling by array (33)
RNA-seq of coding RNA from single cells (8)
RNA-seq of coding RNA (5)
Unknown experiment type (4)
Human - High-throughput sequencing (2)
Ribo-seq (2)
Other (2)
Cell line - Single-cell sequencing (1)
Animal - Single-cell sequencing (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2014 (24)
2015 (21)
2022 (20)
2021 (19)
2023 (17)
2019 (16)
2010 (16)
2012 (15)
2011 (15)
2024 (14)
2008 (14)
2020 (13)
2017 (12)
2013 (10)
2007 (9)
2025 (7)
2016 (6)
2009 (6)
2005 (5)
2018 (5)
2004 (4)
2006 (3)
2003 (3)
2002 (2)
2001 (2)
2026 (1)
2000 (1)
1998 (1)

Lab affiliation

Biological Sciences Division, Pacific Northwest National Laboratory (2)
Institute of Biochemistry and Signal Transduction, University Medical Centre Hamburg-Eppendorf (UKE), 20246 Hamburg, Germany (1)
University Medical Center Hamburg-Eppendorf Institute of Biochemistry and Signal Transduction Hamburg, Germany (1)
Institute of Biochemistry and Signal Transduction, University Medical Center Hamburg-Eppendorf (UKE), Martinistraße 52, 20246 Hamburg, Germany (1)
Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland (1)
Department of Molecular Medicine, Faculty of Medicine, Universiti Malaya, Malaysia (1)
Imperial College London Department of Chemistry (1)

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Identification of Pseudomanas fluorescens Fic auto-AMPylation site

This project has the aim of characterizing the function of the Fic-1 protein of Pseudomonas fluorescens.

ORGANISM(S): Pseudomonas fluorescens Escherichia coli

2016-02-01 | PXD003076 | Pride

The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3

Intracellular bacterial pathogens such as Coxiella burnetii evade their host's immune response by secreting effector proteins that bind and modify host proteins, thereby reshaping cell signaling pathways that help establish a replication-friendly niche. Previous research has identified Filamentation...

ORGANISM(S): Homo sapiens (Human) Coxiella burnetii cb109

2024-01-26 | PXD040330 | Pride

Ampylation Histone h3 Fic enzyme Dna-binding Coxiella burnetii

Identification of Fic substrates in bacteria

This project has the aim of characterizing the function of the Fic-1 protein of Pseudomonas fluorescens.

ORGANISM(S): Pseudomonas fluorescens Escherichia coli

2016-02-01 | PXD003077 | Pride

Post-translational modification Ampylation Adenylylation Bacteria Fic

The Shewanella oneidensis Fic enzyme SoFic targets theswitch-I region of EF-Tu for AMPylation

Fic enzymes mediate diverse post-translational modifications, including adeno-sine monophosphate (AMP) transfer and removal, referred to as AMPylationand deAMPylation, respectively. We identified the prokaryotic translationelongation factor Tu (EF-Tu) as an AMPylation target of the Fic enzymeSoFic. ...

ORGANISM(S): Escherichia coli

2026-09-18 | PXD071331 | Pride

Structural regulation Ampylation Ef-tu Fic enzymes Deampylation

The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3.

Not available

S-EPMC10628234 | biostudies-literature

Fic-mediated AMPylation tempers the unfolded protein response during physiological stress.

Not available

S-EPMC9371680 | biostudies-literature

Fic-mediated deAMPylation is not dependent on homodimerization and rescues toxic AMPylation in flies.

Not available

S-EPMC5743091 | biostudies-literature