Filipe M M - OmicsDI

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Unknown (236)
Transcriptomics (17)
Metabolomics (10)
Proteomics (8)
Genomics (5)

Organisms

Homo sapiens (7)
Mus musculus (6)
Arabidopsis thaliana (4)
Staphylococcus aureus subsp. aureus USA300_FPR3757 (1)
Eucalyptus globulus (1)
Listeria monocytogenes EGD-e (1)
Bacteria (1)
Canis lupus familiaris (1)
Ruminococcus bromii L2-63 (1)
Staphylococcus aureus (1)

Repository

biostudies-arrayexpress (22)
MetaboLights (10)
pride (6)
MassIVE (2)

Tissue

Cell culture (1)
Cell suspension culture (1)
Liver (1)
Mucus (1)
Pancreatic cancer cell (1)

Technology Type

Mass spectrometry (10)
Mass Spectrometry (6)
Shotgun proteomics (3)
Data-dependent acquisition (1)
Data-independent acquisition (1)
SWATH MS (1)

Instrument Platform

Axon- GenePix4000B (3)
Illumina HiSeq 2000 (2)
Q Exactive HF-X (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - negative - direct infusion (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina HiSeq 1000 (1)
Diode array detection MS - (1)

Publication Date

2021 (8)
2022 (5)
2015 (4)
2010 (4)
2006 (3)
2014 (2)
2013 (2)
2012 (2)
2008 (2)
2025 (2)
2024 (2)
2011 (1)
2009 (1)
2023 (1)
2026 (1)

CHEBI ID

CHEBI:16610 (2)
CHEBI:16742 (2)
CHEBI:16750 (2)
CHEBI:17596 (2)
CHEBI:17687 (2)
CHEBI:60377 (2)
CHEBI:102265 (1)
CHEBI:1156 (1)
CHEBI:133316 (1)
CHEBI:133365 (1)
CHEBI:138560 (1)
CHEBI:138872 (1)
CHEBI:15347 (1)
CHEBI:15366 (1)
CHEBI:15402 (1)
CHEBI:15414 (1)
CHEBI:15422 (1)
CHEBI:15424 (1)
CHEBI:15428 (1)
CHEBI:15435 (1)
CHEBI:15596 (1)
CHEBI:15603 (1)
CHEBI:15610 (1)
CHEBI:15627 (1)
CHEBI:15713 (1)
CHEBI:15725 (1)
CHEBI:15727 (1)
CHEBI:15753 (1)
CHEBI:15754 (1)
CHEBI:15756 (1)

Metabolite Name

Accurate mass (2)
CMP (2)
(+)-Neomenthol (1)
(-)-Medicocarpin (1)
(10S)-Juvenile hormone III acid diol (1)
(10S)-Juvenile hormone III diol (1)
(1R)-Hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene (1)
(1R,2S)-Naphthalene 1,2-oxide (1)
(2-Naphthyl)methanol (1)
(22R,23R)-22,23-Dihydroxy-campest-4-en-3-one (1)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (1)
(2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate (1)
(2S,3S)-3-Methylphenylalanine (1)
(3R,2'S)-Myxol 2'-alpha-L-fucoside (1)
(3S,2'S)-4-Ketomyxol 2'-alpha-L-fucoside (1)
(4E)-2-Oxohexenoic acid (1)
(9Z)-Hexadecenoic acid (1)
(9Z)-Octadecenoic acid (1)
(Indol-3-yl)acetamide (1)
(R)-(Homo)2-citrate (1)
(R)-10-Hydroxystearate (1)
(R)-Mandelamide (1)
(R)-Mandelate (1)
(S)-DNPA (1)
(S)-Malate (1)
(Z)-3-Hexen-1-ol acetate (1)
(Z)-3-Peroxyaminoacrylate (1)
1,1'-Dihydroxy-1,1',2,2'-tetrahydrolycopene (1)
1,2-Dihydronaphthalene-1,2-diol (1)
1,2-Dihydroxy-8-methylnaphthalene (1)

Study type

Transcription profiling by array (11)
ChIP-seq (2)
DNA-seq (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (47)
2022 (40)
2023 (39)
2024 (29)
2025 (22)
2020 (13)
2019 (12)
2018 (11)
2015 (7)
2016 (6)
2014 (5)
2010 (5)
2017 (5)
2013 (4)
2006 (3)
2026 (3)
2012 (2)
2008 (2)
2011 (1)
2009 (1)
2005 (1)

Lab affiliation

The University of Melbourne (2)
CECAD Research Cluster, University of Cologne, Joseph-Stelzmann Str. 26, 50931 Köln, Germany. Center for Molecular Medicine Cologne (CMMC), University of Cologne, Robert-Koch Str. 21, 50931 Köln, Germany Institute of Clinical Sciences, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London W12 0HS, UK (1)
Dept. of Oncology-Pathology, Karolinska Institutet, SciLifeLab, Stockholm, Sweden (1)
Dipartimento di Medicina Veterinaria, Università degli Studi di Milano, Lodi, 26900, LO, Italy (1)
University of Michigan (1)

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Epigenetically Silenced Genes Found Using Methylated DNA Immunoprecipitation in Colon Cancer Cells Deficient in DNMTs

CpG island promoter hypermethylation of tumor suppressor genes is a common hallmark of human cancer, and new large-scale epigenomic technologies might be useful in our attempts to define the complete DNA hypermethylome of tumor cells. Here we report a functional search for hypermethylated CpG island...

ORGANISM(S): Homo sapiens

2010-05-27 | E-GEOD-9267 | biostudies-arrayexpress

Transcription profiling of S. meliloti time series mid-log phase to late exponential phase

time course experiment: Bacteria grown from mid-log phase to late exponential phase

ORGANISM(S): Sinorhizobium meliloti

2006-01-01 | E-MEXP-468 | biostudies-arrayexpress

Analysis of Complementary Sex-Determiner (csd) Allele Diversity in Different Honeybee Subspecies from Italy Based on NGS Data.

Not available

S-EPMC9222915 | biostudies-literature

Transcription profiling of S. meliloti BacA mutants

Expression profile in bacteria from infection threads

ORGANISM(S): Sinorhizobium meliloti

2006-02-01 | E-TABM-73 | biostudies-arrayexpress

Quantification of cell cycle kinetics by EdU (5-ethynyl-2'-deoxyuridine)-coupled-fluorescence-intensity analysis.

Not available

S-EPMC5522303 | biostudies-literature

Bioaccumulation of therapeutic drugs by human gut bacteria (L.saccharolytica;Standards assays)

Bacteria in the gut can modulate the availability and efficacy of therapeutic drugs. Interactions at this level have only recently started to being systematically mapped and the main underlying mechanism proposed is chemical transformation of drugs by microbes (biotransformation). Here, we invest...

2021-07-20 | MTBLS2885 | MetaboLights

Sas20 is a highly flexible starch-binding protein in the Ruminococcus bromii cell-surface amylosome

Ruminococcus bromii is a keystone species in the human gut that has the rare ability to degrade dietary resistant starch (RS). This bacterium secretes a suite of starch-active proteins that work together within larger complexes called amylosomes that allow R. bromii to adhere to and degrade RS. Sas2...

ORGANISM(S): Bacteria Ruminococcus bromii L2-63

2022-06-09 | PXD032013 | Pride

R. bromii