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ModelsCasini2022 - genome scale metabolic model (iMTD22IC) of Methanothermobacter thermautotrophicus Delta H
(iMTD22IC) This model is described in these articles: Casini, I., McCubbin, T., Esquivel-Elizondo, S., Luque, G.G., Evseeva, D., Fink, C., Beblawy, S., Youngblut, N.D., Aristilde, L., Huson, D., Drager, A., Ley, R., Marcellin, E., Angenent, L.T., Molitor, B. 2023. An integrated systems biology app...
2026-03-15 | MODEL2211290001 | BioModels
FROG 
ModelsCasini2022 - Methanothermobacter marburgensis Marburg
This model is described in these articles: Casini, I., McCubbin, T., Esquivel-Elizondo, S., Luque, G.G., Evseeva, D., Fink, C., Beblawy, S., Youngblut, N.D., Aristilde, L., Huson, D., Drager, A., Ley, R., Marcellin, E., Angenent, L.T., Molitor, B. 2023. An integrated systems biology approach reveal...
2026-03-15 | MODEL2211290003 | BioModels
FROG 
ModelsCasini2022 - Methanothermobacter thermautotrophicus Z-245
(iMTD22IC) This model is described in these articles: Casini, I., McCubbin, T., Esquivel-Elizondo, S., Luque, G.G., Evseeva, D., Fink, C., Beblawy, S., Youngblut, N.D., Aristilde, L., Huson, D., Drager, A., Ley, R., Marcellin, E., Angenent, L.T., Molitor, B. 2023. An integrated systems biology ap...
2026-03-15 | MODEL2211290002 | BioModels
FROG 
TranscriptomicsDistribution of elongating RNA polymerase II along the 5'/3' regions in xrn1 mutants
Determination of the 3' or 5' intragenic nascent transcriptional rate. Maintaining the proper mRNA levels is a key aspect in the regulation of gene expression. The balance between mRNA synthesis and decay determines these levels. Using a whole-genome analysis, we demonstrate that most yeast mRNAs a...
ORGANISM(S): Saccharomyces cerevisiae 
2013-05-22 | E-GEOD-43602 | biostudies-arrayexpress
TranscriptomicsGenomic Run On (GRO): determination of the nascent transcriptional rates and mRNA levels in several yeast mutants (SAC3, SUS1, SRC1)
We analyzed the effect of SAC3, SUS1 and SRC1 on the transcription rates, mRNA stabilities and mRNA levels by doing GRO experiments in a deletion mutants and the partial C-truncated version of Sac3 comparing with a wild type. Some data for mRNA amounts (sus1 ans src1 mutants) are not included becaus...
ORGANISM(S): Saccharomyces cerevisiae 
2015-12-31 | E-GEOD-63769 | biostudies-arrayexpress
TranscriptomicsGenomic Run On (GRO): determination of the nascent transcriptional rates and mRNA levels in several yeast mutants.
In order to maintain the appropriate level of mRNA it is necessary coordinate simultaneously all the steps along the mRNA life cycle. It has been shown that several factors act in the regulation of gene expression as global coordinators. Thus, some kind of information is transferred from the nucleus...
ORGANISM(S): Saccharomyces cerevisiae 
2015-12-31 | E-GEOD-57467 | biostudies-arrayexpress
TranscriptomicsGenomic Run On (GRO): determination of the nascent transcriptional rates in a spt16 mutant
We analyzed the effect of SPT16 on the transcription rates, mRNA stabilities and mRNA levels by doing GRO experiments in a thermosensitive spt16 point mutant (G132D) mutant at 35 ºC comparing with permisive temperature (30 ºC) and a wt treated in the same way. Cells (wt or spt16 mutant) were grown...
ORGANISM(S): Saccharomyces cerevisiae 
2016-01-05 | E-GEOD-64006 | biostudies-arrayexpress
TranscriptomicsGenomic Run On (GRO): determination of the nascent transcriptional rates and mRNA levels in several yeast mutants (PUB1 and NGR1)
We analyzed the effect of PUB1 and NGR1 on the transcription rates, mRNA stabilities and mRNA levels by doing GRO experiments in a deletion mutants comparing with a wild type in both glucose (YPD) and galactose (YPGal) media. Some data for the wt in YPGal are not included because were already in GEO...
ORGANISM(S): Saccharomyces cerevisiae 
2015-12-31 | E-GEOD-63729 | biostudies-arrayexpress
ProteomicsLongitudinal Analysis of the Lung Proteome Reveals Persistent Repair Months after Mild to Moderate COVID-19
In order to assess the restoration of homeostasis in the lung proteome after COVID-19 infection, we performed bronchoalveolar lavage on 45 patients with mild to moderate disease at three phases (acute, recovery, convalescence) over a year. Changes in proteins were assessed using a multimodal approac...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-05-30 | MSV000094898 | MassIVE
UnknownEarly trajectories of virological and immunological biomarkers and clinical outcomes in patients admitted to hospital for COVID-19: an international, prospective cohort study.
Not available
S-EPMC11181148 | biostudies-literature
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