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Unknown
(7736)
Genomics
(1587)
Transcriptomics
(131)
Proteomics
(62)
Metabolomics
(55)
Other
(15)
Methylation profiling
(1)
Organisms
Mus musculus
(31)
Homo sapiens
(15)
Staphylococcus aureus
(9)
Mycobacterium tuberculosis
(8)
Bacillus subtilis
(6)
human gut metagenome
(4)
Bacteria
(4)
Bacteroides thetaiotaomicron
(4)
Thermus thermophilus HB8
(3)
Bacillus anthracis
(3)
Bacillus cereus
(2)
Zea mays
(2)
Caenorhabditis elegans
(2)
Roseburia inulinivorans DSM 16841
(2)
uncultured bacterium
(2)
Listeria monocytogenes EGD-e
(2)
gut metagenome
(1)
Spodoptera exigua
(1)
Bacillus anthracis str. Ames
(1)
Streptococcus mutans UA159
(1)
Bacillus anthracis str. Sterne
(1)
Salmonella enterica
(1)
Bacillus cereus ATCC 14579
(1)
Bacillus subtilis subsp. subtilis
(1)
Corynebacterium glutamicum
(1)
Bacillus amyloliquefaciens
(1)
Aedes aegypti
(1)
Streptococcus pneumoniae
(1)
Solanum tuberosum
(1)
Mycobacterium tuberculosis H37Rv
(1)
Organisms
Bacillus sp. (in: firmicutes)
(38)
mouse gut metagenome
(22)
Mus musculus
(21)
soil metagenome
(16)
human gut metagenome
(14)
gut metagenome
(10)
pig gut metagenome
(9)
Homo sapiens
(8)
Bacillota
(7)
plant metagenome
(6)
Bacteria
(6)
Staphylococcus aureus
(6)
bovine gut metagenome
(5)
Clostridium perfringens
(5)
endophyte metagenome
(4)
marine metagenome
(4)
Bacillus velezensis
(4)
Rattus norvegicus
(4)
aerosol metagenome
(3)
compost metagenome
(3)
chicken gut metagenome
(3)
insect gut metagenome
(3)
Macaca mulatta
(3)
uncultured bacterium
(3)
Bacillati
(3)
Sus scrofa
(3)
feces metagenome
(3)
Limosilactobacillus fermentum
(3)
food fermentation metagenome
(3)
Firmicutes bacterium M10-2
(2)
Repository
ENA
(1576)
biostudies-arrayexpress
(78)
geo
(69)
MetaboLights
(50)
pride
(38)
MassIVE
(20)
EGA
(5)
GNPS
(5)
iProX
(5)
jPOST
(2)
NODE
(1)
PanoramaPublic
(1)
PeptideAtlas
(1)
Tissue
Feces
(5)
Colon
(4)
Prokaryotic cell
(4)
Blood serum
(1)
Cell culture
(1)
Culture condition:anaerobically-grown cell
(1)
Rumen
(1)
Disease
Disease free
(2)
Allergic asthma
(1)
Epidural abscess
(1)
Listeriosis
(1)
Wounds and Injuries
(1)
Technology Type
Mass Spectrometry
(38)
Mass spectrometry
(37)
Shotgun proteomics
(30)
Mass spectrometry assay
(12)
Gel-based experiment
(3)
Bottom-up proteomics
(2)
SWATH MS
(2)
NMR spectroscopy
(1)
Data-dependent acquisition
(1)
Metaproteomics
(1)
Instrument Platform
Liquid Chromatography MS - positive - reverse phase
(23)
Q Exactive HF
(5)
6550 iFunnel Q-TOF LC/MS
(4)
Q Exactive
(3)
Illumina MiSeq
(2)
NextSeq 500
(2)
6545 Q-TOF LC/MS
(2)
Orbitrap Exploris 480
(2)
10X Genomics Chromium
(1)
Anaerobic workstation with airlock
(1)
NanoDrop
(1)
Bioanalyser
(1)
Bellco roll-in incubator
(1)
Variable Atmosphere Incubator
(1)
Illumina Genome Analyzer II
(1)
N/A
(1)
Illumina HiSeq 2000
(1)
Illumina HiSeq 4000
(1)
Agilent QTOF
(1)
LTQ Orbitrap
(1)
MicrOTOF-Q II
(1)
1200 series LC/MSD SL
(1)
LCMS-9030
(1)
Orbitrap
(1)
Orbitrap Fusion
(1)
Orbitrap Fusion Lumos
(1)
Q-exactive
(1)
SYNAPT G2-Si
(1)
Synapt G2 HDMS
(1)
Synapt HDMS
(1)
Publication Date
2025
(27)
2024
(26)
2022
(25)
2026
(23)
2010
(21)
2013
(18)
2023
(16)
2021
(16)
2012
(14)
2018
(12)
2014
(11)
2019
(11)
2015
(7)
2009
(7)
2020
(7)
2016
(6)
2011
(5)
2017
(5)
2008
(4)
2005
(4)
2006
(2)
2007
(1)
CHEBI ID
CHEBI:16708
(10)
CHEBI:17568
(10)
CHEBI:17596
(10)
CHEBI:17368
(9)
CHEBI:16040
(8)
CHEBI:16750
(8)
CHEBI:17154
(8)
CHEBI:116314
(8)
CHEBI:27248
(8)
CHEBI:16235
(8)
CHEBI:16335
(8)
CHEBI:7916
(8)
CHEBI:72663
(8)
CHEBI:16704
(8)
CHEBI:16015
(8)
CHEBI:16919
(8)
CHEBI:27897
(8)
CHEBI:17351
(8)
CHEBI:17256
(7)
CHEBI:15956
(7)
CHEBI:15760
(7)
CHEBI:17748
(7)
CHEBI:27452
(7)
CHEBI:17015
(7)
CHEBI:68433
(7)
CHEBI:17821
(7)
CHEBI:17929
(7)
CHEBI:41865
(7)
CHEBI:17780
(7)
CHEBI:35581
(7)
Metabolite Name
Hypoxanthine
(15)
Riboflavin
(14)
L-Histidine
(13)
Adenine
(13)
Guanine
(12)
Guanosine
(12)
L-Phenylalanine
(11)
Taurine
(10)
Oleamide
(10)
Adenosine
(10)
Thymidine
(10)
Creatine
(10)
Corticosterone
(9)
Thymine
(9)
Choline
(9)
Estrone
(9)
Cytosine
(9)
Tetradecanedioic acid
(9)
L-Tryptophan
(9)
L-Serine
(9)
Xanthine
(9)
Creatinine
(9)
Inosine
(9)
Enalaprilat
(8)
Citrulline
(8)
Aspartame
(8)
L-Proline
(8)
Triethanolamine
(8)
Ricinoleic acid
(8)
L-Asparagine
(8)
First Public Date
2013
(197)
2025
(167)
2024
(146)
2023
(133)
2021
(125)
2020
(123)
2026
(110)
2022
(110)
2019
(102)
2018
(86)
2017
(80)
2014
(62)
2016
(60)
2015
(60)
2012
(8)
2011
(4)
2010
(3)
Classification
bacteria
(20)
viruses
(1)
Modification
+3amu)
(1)
15.994915
(1)
27.994915
(1)
42.010565
(1)
45.029395
(1)
57.021464
(1)
Study type
Transcription profiling by array
(55)
RNA-seq of coding RNA
(10)
Unknown experiment type
(5)
Comparative genomic hybridization by array
(2)
DNA-seq
(2)
Other
(1)
RNA-seq of coding RNA from single cells
(1)
RNA-seq of total RNA
(1)
RNA-seq of non coding RNA
(1)
Release Date
2022
(1146)
2023
(911)
2021
(894)
2024
(739)
2020
(727)
2025
(681)
2019
(500)
2018
(481)
2017
(372)
2016
(274)
2015
(249)
2014
(185)
2013
(161)
2012
(117)
2011
(84)
2026
(71)
2010
(57)
2009
(45)
2008
(41)
2007
(24)
2006
(20)
2005
(18)
2004
(8)
2003
(3)
1998
(2)
2002
(1)
2001
(1)
2000
(1)
1999
(1)
Lab affiliation
Quantitative Proteomics Proteome Center Tübingen Universität Tübingen Auf der Morgenstelle 15 72076 Tübingen
(3)
The University of Queensland, Australia
(2)
1 School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia. 2 Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia
(1)
1UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW 2052, Australia
(1)
Australian Centre for Water and Environmental Biotechnology (formerly AWMC), University of Queensland
(1)
CERELA CONICET - Argentina (Reference Center for Lactobacilli, National Scientific and Technical Research Council - Argentina)
(1)
Department Molekulare Systembiologie Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Permoserstraße 15 04318 Leipzig
(1)
Department of Biology and Technology, Kunming University, Kunming, China
(1)
Department of Biotechnology, Technical University Delft, Julianalaan 67. 2682 BC Delft, The Netherlands
(1)
Department of Biotechnology, Yonsei University, Seoul 03722, South Korea
(1)
Department of Dental Medicine, Karolinska Institutet
(1)
Department of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Switzerland
(1)
Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway
(1)
Faculty of Medicine, University of Ottawa
(1)
IDEAS Laboratory:Center for Microbiome & Inflammatory Research UBC Okanagan
(1)
ISAS Bunsen-Kirchhoff-Str. 11 44139 Dortmund Germany
(1)
Institut Pasteur Unité des Interactions Bactéries-Cellules, Inserm U604, INRA USC2020 25 rue du Dr. Roux 75015 Paris France
(1)
Jagiellonian University
(1)
Laboratoire Pathogénese des Bactéries Anaérobies, Institut Pasteur, UMR CNRS 2001, Université de Paris, Paris, France
(1)
Laboratory for Environmental Biotechnology, Ecole polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland
(1)
Medical Microbiology
(1)
Pacific Northwest National Laboratory, USA
(1)
Porto Conte Ricerche, Alghero, Sardinia, Italy
(1)
Porto Conte Ricerche, Science and Technology Park of Sardinia, Tramariglio, Alghero, Italy
(1)
Proteomics Laboratory, Porto Conte Ricerche, Alghero, Italy
(1)
Quantitative Proteomics Proteome Center Tuebingen University Tuebingen Auf der Morgenstelle 15 72076 Tuebingen
(1)
School of Chemistry and Bio21 Molecular Science and Biotechnology Institute and University of Melbourne, Parkville, Victoria 3010, Australia
(1)
State Key Laboratory of Microbial Metabolism, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, China
(1)
Systems Biology Laboratory, Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency
(1)
The Centre for Microbiome and Inflammatory Research UBC Okanagan
(1)
Tags
pathogen
(21)
pathogen:bacterium
(20)
xref:PubMed:17183312
(7)
xref:PubMed:41046693
(3)
xref:PubMed:29040502
(3)
xref:PubMed:19321416
(3)
xref:PubMed:29986060
(2)
xref:PubMed:38713722
(2)
xref:PubMed:24987952
(2)
xref:PubMed:24732106
(2)
xref:PubMed:24402126
(2)
xref:PubMed:23239972
(2)
wastewater
(2)
xref:PubMed:38520936
(1)
xref:ArrayExpress:E-ERAD-176
(1)
xref:PubMed:34954656
(1)
xref:PubMed:34967415
(1)
xref:PubMed:30030441
(1)
xref:PubMed:41690922
(1)
xref:PubMed:20585117
(1)
xref:PubMed:24336217
(1)
xref:PubMed:21565927
(1)
xref:PubMed:37403161
(1)
xref:PubMed:36077904
(1)
xref:PubMed:20679207
(1)
xref:PubMed:39064618
(1)
xref:PubMed:25801966
(1)
xref:PubMed:25819618
(1)
xref:PubMed:33167991
(1)
xref:PubMed:35928781
(1)
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Firmicutes
Genome sequencing of rice endophytic bacterial species belongs to Firmicutes phylum.
PRJNA316783
|
ENA
Cite
Firmicutes bacterium FC5
Firmicutes bacterium FC5 Genome sequencing and assembly
PRJNA794362
|
ENA
Cite
Firmicutes bacterium ZOR0006
Firmicutes bacterium ZOR0006 Genome sequencing and assembly
PRJNA205588
|
ENA
Cite
Firmicutes bacterium FC7
Firmicutes bacterium FC7 Genome sequencing and assembly
PRJNA794369
|
ENA
Cite
Firmicutes bacterium CAG:170
Firmicutes bacterium CAG:170 overview
PRJNA207145
|
ENA
Cite
Firmicutes bacterium CAG:124
Firmicutes bacterium CAG:124 overview
PRJNA207146
|
ENA
Cite
Firmicutes bacterium CAG:94
Firmicutes bacterium CAG:94 overview
PRJNA207194
|
ENA
Cite
Firmicutes bacterium CAG:129
Firmicutes bacterium CAG:129 overview
PRJNA207150
|
ENA
Cite
Firmicutes bacterium CAG:194
Firmicutes bacterium CAG:194 overview
PRJNA207159
|
ENA
Cite
Firmicutes bacterium CAG:212
Firmicutes bacterium CAG:212 overview
PRJNA207162
|
ENA
Cite
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