Firth B B - OmicsDI

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Unknown (260)
Transcriptomics (30)
Proteomics (13)
Metabolomics (1)

Organisms

Homo sapiens (18)
Mus musculus (12)
Chlorocebus sabaeus (3)
Human alphaherpesvirus 1 (1)
Platichthys flesus (1)
Lasius niger (1)
Equus caballus (1)
Chlamydomonas reinhardtii (1)
Nicotiana benthamiana (1)
Mesocricetus auratus (1)
Gallus gallus (1)
Rattus norvegicus (1)
Colwellia psychrerythraea 34H (1)
Drosophila melanogaster (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Repository

biostudies-arrayexpress (30)
pride (13)
MetaboLights (1)

Tissue

Embryonic stem cell (5)
Cell culture (4)
Early embryonic cell (2)
Epithelial cell (2)
Brain (1)
Fibroblast (1)
Kidney (1)

Disease

Acute lymphoblastic leukemia (1)
T-cell acute lymphoblastic leukemia (1)
COVID-19 (1)
Disease free (1)

Technology Type

Mass Spectrometry (13)
Shotgun proteomics (6)
Bottom-up proteomics (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Mass spectrometry assay (1)
Gel-based experiment (1)
Top-down proteomics (1)

Instrument Platform

NextSeq 500 (12)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2022 (9)
2021 (7)
2012 (6)
2026 (3)
2025 (3)
2015 (3)
2024 (2)
2017 (2)
2020 (1)
2019 (1)
2018 (1)
2016 (1)
2014 (1)
2009 (1)
2008 (1)
2007 (1)
2023 (1)

Metabolite Name

1',2'-Dihydro-1,1'-dimethyl-2'-oxo-4,4'-bipyridinium(1+) (1)
1,1-Dimethylbiguanide (1)
1,2,3,4,5,6-Hexahydro-5-(1-hydroxyethylidene)-7H-cyclopenta[b]pyridin-7-one (1)
1,2,3-Trihydroxybenzene (1)
1,2-Dichloroethane (1)
1,2-Dimethoxy-4-vinylbenzene (1)
1,3,7-Trimethyluric acid (1)
1,3-Di-tert-butylbenzene (1)
1,4-Bis-(1,1-dimethylethyl)-benzene (1)
1,4-Dideoxy-1,4-imino-D-ribitol (1)
1,5-Anhydrosorbitol (1)
1-(1-Pyrrolidinyl)-2-propanone (1)
1-(4-Methoxyphenyl)-2-nitroethylene (1)
1-(Methylthio)-propane (1)
1-Hydroxyepiacorone (1)
1-Ipomeanol (1)
1-Isothiocyanato-2-(methylthio)ethane (1)
1-Kestose (1)
1-Methoxyspirobrassinin (1)
1-Methyladenine (1)
1-Methylnicotinamide (1)
1-Phenyl-2-hexanone (1)
1-Pyrrolidinecarboxaldehyde (1)
17-Hydroxyprogesterone (1)
17-alpha-ethinyl estradiol (1)
19-Oxotestosterone (1)
2',4'-Dihydroxyacetophenone (1)
2',8-Dihydroxy-3',4',5',7-tetramethoxyflavan (1)
2'-Hydroxy-5'-methylacetophenone (1)
2,2,6,6-Tetramethyl-4-piperidinone (1)

Study type

RNA-seq of coding RNA (10)
Transcription profiling by array (6)
Ribo-seq (4)
Cell line - High-throughput sequencing (3)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
Translation profiling (1)
High-throughput sequencing (1)
Other (1)

Release Date

2022 (36)
2020 (25)
2025 (23)
2023 (23)
2021 (21)
2018 (21)
2024 (20)
2019 (18)
2017 (16)
2015 (13)
2016 (12)
2012 (9)
2009 (8)
2008 (8)
2026 (7)
2014 (7)
2013 (6)
2007 (5)
2011 (4)
2006 (3)
2010 (2)
2005 (2)
2003 (1)

Lab affiliation

School of Biosciences Firth Court, Western Bank University of Sheffield Sheffield, S10 2TN United Kingdom (3)
Cambridge Centre for Proteomics Department of Biochemistry University of Cambridge (1)
Department of Biomedical Science E-04, Florey building Firth Court, Western Bank University of Sheffield Sheffield, S10 2TN United Kingdom (1)
Department of Medical Biochemistry and Biophysics, Division of Molecular Metabolism, Karolinska Institutet, Biomedicum, 171 65 Solna, Sweden Max Planck Institute Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, Stockholm, Sweden (1)
Department of Molecular Biology and Biotechnology, Firth Court, University of Sheffield, Sheffield, UK (1)
Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge CB2 1QP (1)
Nunn Lab, University of Washington, Department of Genome Sciences, Seattle, WA USA (1)
School of Biosciences Firth Court, Western Bank University of Sheffield (1)
School of Biosciences Firth Court, Western Bank University of Sheffield Sheffield, S10 2TN (1)
School of Biosciences University of Sheffield Firth Court, Western Bank Sheffield, S10 2TN United Kingdom (1)
School of Biosciences University of Sheffield United Kingdom (1)

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Altered Subgenomic RNA Abundance in SARS-CoV-2 B.1.1.7 Infections

SARS-CoV-2 lineage B.1.1.7 viruses are more transmissible, may lead to greater clinical severity, and result in modest reductions in antibody neutralization. Subgenomic RNA(sgRNA) is produced by discontinuous transcription of the SARS-CoV-2 genome. Applying our tool(periscope) to ARTIC Network Nanop...

ORGANISM(S): Homo sapiens (Human) Severe acute respiratory syndrome coronavirus 2

2021-11-26 | PXD029954 | Pride

The importance of triple panel testing for hepatitis B and the burden of isolated anti-hepatitis B core antibodies within a community sample.

Not available

S-EPMC10761777 | biostudies-literature

Human Leukocyte Antigen B*14:01 and B*35:01 Are Associated With Trimethoprim-Sulfamethoxazole Induced Liver Injury.

Not available

S-EPMC7544638 | biostudies-literature

Structural change in a B-DNA helix with hydrostatic pressure.

Not available

S-EPMC2475645 | biostudies-literature

phytochrome B Is required for light-mediated systemic control of stomatal development.

Not available

S-EPMC4046225 | biostudies-literature

A Type II-B Cas9 nuclease with minimized off-targets and reduced chromosomal translocations in vivo.

Not available

S-EPMC10482872 | biostudies-literature

Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections.

Not available

S-EPMC9255483 | biostudies-literature

Different exercise modalities have distinct effects on the transcriptome profile in the male rat femoral diaphysis

Mechanical loading is a key determinant of bone mass, geometry and strength and is essential to maintain optimal skeletal health. We hypothesized that spontaneous low-impact exercise would affect global gene transcript levels in cortical bone of growing rats. We used RNA-Seq to analyse the transcrip...

ORGANISM(S): Rattus norvegicus

2015-11-02 | E-GEOD-67787 | biostudies-arrayexpress

Heart-Brain 346-7 Score: the development and validation of a simple mortality prediction score for carbon monoxide poisoning utilizing deep learning.

Not available

S-EPMC10529057 | biostudies-literature

HBVRegDB: annotation, comparison, detection and visualization of regulatory elements in hepatitis B virus sequences.

Not available

S-EPMC2235840 | biostudies-literature

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