Fischer Kirsten K

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Transcriptomics (16)
Unknown (7)
Proteomics (1)
Metabolomics (1)

Organisms

Homo sapiens (5)
Rattus norvegicus (4)
Drosophila melanogaster (2)
Viruses (1)
Aliivibrio salmonicida LFI1238 (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (16)
MassIVE (1)
MetaboLights (1)

Technology Type

Mass spectrometry assay (1)

Instrument Platform

Orbitrap Exploris 480 (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2013 (4)
2015 (3)
2010 (3)
2014 (2)
2016 (1)
2011 (1)
2009 (1)
2007 (1)
2020 (1)
2026 (1)

CHEBI ID

CHEBI:1127735 (1)
CHEBI:127762 (1)
CHEBI:134216 (1)
CHEBI:1427 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15366 (1)
CHEBI:15428 (1)
CHEBI:15603 (1)
CHEBI:15727 (1)
CHEBI:15728 (1)
CHEBI:15729 (1)
CHEBI:15741 (1)
CHEBI:15891 (1)
CHEBI:15908 (1)
CHEBI:15940 (1)
CHEBI:15971 (1)
CHEBI:16020 (1)
CHEBI:16135 (1)
CHEBI:16259 (1)
CHEBI:16347 (1)
CHEBI:16359 (1)
CHEBI:16411 (1)
CHEBI:16414 (1)
CHEBI:16437 (1)
CHEBI:16450 (1)
CHEBI:16467 (1)
CHEBI:16543 (1)
CHEBI:16704 (1)
CHEBI:16709 (1)

Metabolite Name

(+)-S,S-Ethambutol (1)
(+)-Thioctic acid (1)
(+)-yohimbine (1)
(+/-)-Camphoric acid (1)
(+/-)-Hesperetin (1)
(+/-)-Metanephrine (1)
(-)-Oxycodone (1)
(-)-Oxymorphone (1)
(-)-Shikimic acid (1)
(-)-secoisolariciresinol (1)
(12-Methyl-7-tetraphenyl)methyl hydrogen sulfate (1)
(2E)-3-(3,4-Dimethoxyphenyl)acrylic acid (1)
(2E)-3-(4-Hydroxy-3-methoxyphenyl)-N-(4-oxobutyl)acrylamide (1)
(2E)-3-Methyl-4-(sulfooxy)-2-butenoic acid (1)
(2E)-N-[2-(Dihydroxymethyl)-4-hydroxy-5-methoxyphenyl]-3-(4-hydroxy-3-methoxyphenyl)acrylamide (1)
(2R)-1-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-3-hydroxy-2-propanyl (6Z,9Z,12Z,15Z)-6,9,12,15-octadecatetraenoate (1)
(2R,3R)-2-(3,4-Dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 4-hydroxybenzoate (1)
(2R,3S)-3-Hydroxy-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylic acid (1)
(2S)-3-(1H-Imidazol-4-yl)-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)propanoic acid (non-preferred name) (1)
(2S)-6-Amino-2-[(E)-(hydroxymethylene)amino]hexanimidic acid (1)
(2Z)-(2,6-Dihydroxy-3,4-dimethoxycyclohexylidene)acetonitrile (1)
(3S)-3-{[(2E)-3-Carboxy-2-propenoyl]oxy}-4-(trimethylammonio)butanoate (1)
(3S)-3-{[(2E)-4-Carboxy-2-butenoyl]oxy}-4-(trimethylammonio)butanoate (1)
(3S,4S)-7,12-Dimethyl-3,4-dihydro-3,4-tetraphenediol (1)
(4-Ethoxyphenyl)urea (1)
(4E)-2-Amino-3-oxo-4-undecenoic acid (1)
(4R,5S,9S,10R,12S,13S)-1,5,9-Trimethyl-11,14,15,16-tetraoxatetracyclo[10.3.1.0~4,13~.0~8,13~]hexadecan-10-ol (1)
(4S)-4-[(2E,4Z)-2,4-Decadienoyloxy]-4-(trimethylammonio)butanoate (1)
(4beta,8alpha,9R)-6'-Methoxycinchonan-3,9-diol (1)
(5R,6Z,8E,10E,12S,14Z)-5,12,20,20,20-Pentahydroxy-6,8,10,14-icosatetraenoic acid (1)

Study type

Transcription profiling by array (12)
Unknown experiment type (2)
RNA-seq of coding RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2015 (4)
2013 (4)
2014 (3)
2010 (3)
2009 (2)
2021 (2)
2016 (1)
2011 (1)
2007 (1)
2019 (1)
2012 (1)

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Rat Life Cycle Kidney miRNA Expression Data

Kidney miRNA expression was examined in F344 rats at 2, 5, 6, 8, 15, 21, 78, and 104 weeks of age in both sexes using Agilent miRNA microarrays. 311 miRNAs were found to be expressed in at least one age and sex. Filtering criteria of ?1.5 fold change and ANOVA (FDR <5%) revealed 174 differentially e...

ORGANISM(S): Rattus norvegicus

2015-01-10 | E-GEOD-64842 | biostudies-arrayexpress

Predicting drug susceptibility of non-small cell lung cancers based on genetic lesions.

Not available

S-EPMC2689116 | biostudies-literature

Rat Life Cycle (RLC) Heart Gene Expression Data

Cardiovascular disease (CVD) is the leading cause of mortality, with sex and age being strong risk factors. Mitochondria are vital for normal cardiac function, and regulation of mitochondrial structure and function may impact susceptibility to CVD. We analyzed the basal expression levels of mitocho...

ORGANISM(S): Rattus norvegicus

2014-09-30 | E-GEOD-58204 | biostudies-arrayexpress

Identification of Xenotropic MuLV-related virus

This series includes 20 microarrays used to identify Xenotropic MuLV-related virus (XMRV) in a set of human prostate tumors associated with R462Q RNASEL variant (Urisman, et al. 2006). The series includes 19 prostate tumor samples (VP) and a cell line control (HeLa).

ORGANISM(S): Viruses

2010-07-01 | E-GEOD-3607 | biostudies-arrayexpress

Habitual Coffee Intake Shapes the Gut Microbiome and Modifies Host Physiology and Cognition: double-blind, randomised, parallel design

Coffee influences multiple physiological processes, including gut function, stress, cognition, and the microbiome. However, the mechanisms underlying these effects remain poorly understood. In this study, we examined coffee’s impact on the microbiota–gut–brain axis—a bidirectional communication p...

2026-03-26 | MTBLS13401 | MetaboLights

Rat Life Cycle Kidney Male Gene Expression Data

The kidney is important for a number of physiological processes including blood filtering, blood pressure regulation and proper excretion of many drugs and xenobiotics. Age is a predisposing condition for susceptibility to chronic kidney disease and progression as well as acute kidney injury that ma...

ORGANISM(S): Rattus norvegicus

2013-07-31 | E-GEOD-47068 | biostudies-arrayexpress

Making the invisible enemy visible.

Not available

S-EPMC8340564 | biostudies-literature

Hog1 ChIP Chip

Yeast Hog1-3HA ChIP-Chip in triplicate Keywords: ChIP-Chip Yeast Hog1 ChIP-Chip was performed in MAP51 (3HA-Hog1) in triplicate using anti-HA (12CA5 monoclonal antibody)

ORGANISM(S): Saccharomyces cerevisiae

2010-07-01 | E-GEOD-4862 | biostudies-arrayexpress

Comprehensive genomic analysis of relapse neuroblastoma [gene expression]

Relapse neuroblastoma were characterized by sequencing, gene expression, arrayCGH and genome-wide methylation. Here we describe the expression data. Array from tumours at relapse were compared to pretreatment tumours and corresponding normal samples.

ORGANISM(S): Homo sapiens

2015-06-19 | E-GEOD-65303 | biostudies-arrayexpress

Analysis of transgene siRNAs and ARL-8-dependent siRNAs in Caenorhabditis elegans

We analyzed the C. elegans small RNA response to high copy transgene sequences expressed in the soma in a wild type and an eri-6/7 mutant background. We also analyzed small RNA defects in the arl-8(tm2472) mutant. Transgene siRNAs are 22 nt long, mostly antisense, and correspond to the promoter, cod...

ORGANISM(S): Caenorhabditis elegans

2013-12-15 | E-GEOD-52785 | biostudies-arrayexpress

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