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TranscriptomicsThe nucleoid-associated protein HU controls three regulons that coordinate virulence and general physiology in Salmonella enterica serovar Typhimurium
The regulon of genes controlled by the HU nucleoid-associated proteins was examined in Salmonella enterica serovar Typhimurium (S. Typhimurium). DNA microarrays were used to detect the effect on the bacterial transcriptome of knockout mutations in the hupA, the hupB and in both the hupA and hupB gen...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2011-03-22 | E-GEOD-22860 | biostudies-arrayexpress
TranscriptomicsLPS-induced gene expression in wildtype and MAL knockout mouse macrophages
Comparison of gene expression in WT and MAL knockout (MALKO) mouse macrophages treated with 10ng/ml lipopolysaccharide (LPS) with that of mock-treated cells incubated for the same time (10 days). Cells from 4 mice of each genotype were used and each individual served as its own control. Hybridizatio...
ORGANISM(S): Mus musculus 
2010-01-28 | E-GEOD-20091 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of samples from 30 humans and 30 chimpanzees to survey copy number variation in these species
Sixty-one array-CGH experiments were performed on the human WGTP platform, comparing: (1) 30 unrelated chimpanzees to a single chimpanzee reference individual, (2) 30 unrelated humans to a single human reference individual and (3) the chimpanzee reference individual to the human reference individual...
ORGANISM(S): Pan troglodytes 
2008-08-28 | E-TABM-479 | biostudies-arrayexpress
TranscriptomicsGene expression in helped versus helpless CD8 T cells
CD4+ ‘helper’ T cells (TH) are pivotal for the generation and maintenance of CD8+ T cell responses. ‘Helped’ CD8+ T cells receive signals during priming that prevent the induction of the pro-apoptotic molecule TRAIL during reactivation, thereby enabling robust secondary expansion. Conversely, ‘helpl...
ORGANISM(S): Mus musculus 
2011-11-26 | E-GEOD-33862 | biostudies-arrayexpress
MetabolomicsGeographic variation of mutagenic exposures in kidney cancer genomes

International differences in the incidence of many cancer types indicate the existence of carcinogen exposures that have not been identified by conventional epidemiology yet potentially make a substantial contribution to cancer burden1. This pertains to clear cell renal cell carcinoma (ccRCC), fo...

2024-03-26 | MTBLS9394 | MetaboLights
ProteomicsBioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Streptococcus pyogenes
The Antibiotic Resistant Sepsis Pathogens Framework Initiative aims to develop a framework dataset of 5 sepsis pathogens (Escherichia coli, Klebsiella pneumoniae complex, Staphylococcus aureus, Streptococcus pneumoniae and Streptococcus pyogenes, 5 strains each) using an integrated application of ge...
ORGANISM(S): Streptoccous pyogenes 
2021-07-05 | PXD020863 | Pride
Proteomics Rpmi Streptococcus pyogenes Orbitrap Lfq Sera Antibiotic resistance Sepsis Dda 
Proteomicsi. Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative – Escherichia coli
The Antibiotic Resistant Sepsis Pathogens Framework Initiative aims to develop a framework dataset of 5 sepsis pathogens (Escherichia coli, Klebsiella pneumoniae complex, Staphylococcus aureus, Streptococcus pneumoniae and Streptococcus pyogenes, 5 strains each) using an integrated application of ge...
ORGANISM(S): Escherichia coli 
2021-07-05 | PXD020545 | Pride
Proteomics Escherichia coli Rpmi Orbitrap Lfq Sera Antibiotic resistance Sepsis Dda 
ProteomicsBioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Klebsiella pneumoniae complex
The Antibiotic Resistant Sepsis Pathogens Framework Initiative aims to develop a framework dataset of 5 sepsis pathogens (Escherichia coli, Klebsiella pneumoniae complex, Staphylococcus aureus, Streptococcus pneumoniae and Streptococcus pyogenes, 5 strains each) using an integrated application of ge...
ORGANISM(S): Klebsiella variicola Klebsiella pneumoniae 
2021-07-05 | PXD020839 | Pride
Proteomics Rpmi Klebsiella Orbitrap Lfq Sera Antibiotic resistance Sepsis Dda 
ProteomicsBioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Streptococcus pyogenes
The Antibiotic Resistant Sepsis Pathogens Framework Initiative aims to develop a framework dataset of 5 sepsis pathogens (5 strains each) using an integrated application of genomic, transcriptomic, metabolomic and proteomic technologies. The pathogens included in this initiative are: Escherichia col...
ORGANISM(S): Streptoccous pyogenes 
2021-07-05 | PXD016913 | Pride
Proteomics Rpmi Swath Streptococcus pyogenes Sera Antibiotic resistance Sepsis 
ProteomicsBioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Escherichia coli
The Antibiotic Resistant Sepsis Pathogens Framework Initiative aims to develop a framework dataset of 5 sepsis pathogens (5 strains each) using an integrated application of genomic, transcriptomic, metabolomic and proteomic technologies. The pathogens included in this initiative are: Escherichia col...
ORGANISM(S): Escherichia coli 
2021-07-05 | PXD016840 | Pride
Proteomics Escherichia coli Rpmi Swath Sera Antibiotic resistance Sepsis 
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