Food fermentation

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Unknown (4956)
Genomics (991)
Proteomics (68)
Metabolomics (52)
Transcriptomics (30)
Models (8)
Other (2)

Organisms

Saccharomyces cerevisiae (8)
Mus musculus (4)
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 (3)
Aspergillus oryzae (3)
Pediococcus acidilactici (2)
Lactococcus lactis subsp. lactis (2)
Bacillus cereus (2)
Arthrobacter sp. CGMCC 3584 (2)
Arthrobacter sp. (2)
Lactobacillus delbrueckii subsp. bulgaricus (2)
Clostridium acetobutylicum (2)
Bacteria (2)
Fungi (2)
Rhizopus microsporus (2)
Lactococcus cremoris subsp. cremoris MG1363 (1)
Mesomycoplasma hyopneumoniae (1)
Methanobrevibacter smithii ATCC 35061 (1)
Streptococcus thermophilus (1)
Canis lupus familiaris (1)
fermentation metagenome (1)
synthetic metagenome (1)
Streptococcus thermophilus CNRZ1066 (1)
mouse metagenome (1)
Cupriavidus necator (1)
Streptomyces noursei (1)
Limosilactobacillus reuteri (1)
Lactococcus lactis (1)
Bacillus cereus ATCC 14579 (1)
Aspergillus (1)
Aspergillus niger (1)

Organisms

food fermentation metagenome (320)
food metagenome (44)
fermentation metagenome (21)
Tetragenococcus halophilus (19)
Saccharomyces cerevisiae (13)
human gut metagenome (10)
Enterococcus lactis (7)
Lactiplantibacillus plantarum (6)
Heyndrickxia coagulans (4)
Bacillus amyloliquefaciens (4)
bovine gut metagenome (4)
Lactococcus lactis (4)
Pediococcus pentosaceus (4)
Pediococcus acidilactici (4)
bioreactor metagenome (4)
Mus musculus (4)
Lactiplantibacillus plantarum WCFS1 (3)
unidentified (3)
Bacillus velezensis (3)
Arthrobacter sp. CGMCC 3584 (2)
Acidipropionibacterium acidipropionici (2)
Lactobacillus amylolyticus (2)
Ligilactobacillus sp. JN-6 (Y).1 (2)
Lentilactobacillus hilgardii (2)
food production metagenome (2)
Lactobacillus johnsonii (2)
Streptococcus thermophilus (2)
Microbiota (2)
Aspergillus cristatus (2)
Lactococcus cremoris (2)

Repository

ENA (991)
pride (51)
MetaboLights (37)
geo (17)
GNPS (15)
biostudies-arrayexpress (14)
iProX (13)
BioModels (8)
jPOST (3)
GPMDB (1)
MassIVE (1)

Tissue

Milk (4)
Whole body (4)
Cell culture (3)
Plant cell (3)
Cotyledon (2)
Feces (2)
Germinated grain (2)
Cell line cell (1)
Colonic mucosa (1)
Culture fluid (1)
Fungal cell (1)
Kernel (1)
Kidney (1)
Kidney field (1)
Mycelium (1)
Seed (1)

Disease

Disease free (2)
Not Available (1)
Chronic kidney disease (1)
Parasitic helminthiasis infectious disease (1)

Technology Type

Mass Spectrometry (51)
Mass spectrometry (26)
Shotgun proteomics (23)
Bottom-up proteomics (17)
Mass spectrometry assay (10)
Data-dependent acquisition (5)
Data-independent acquisition (5)
Gel-based experiment (4)
NMR spectroscopy (2)
Metaproteomics (2)
NMR spectroscopy assay (1)
DiaPASEF (1)
Mass spectrometry imaging (1)
Top-down proteomics (1)

Instrument Platform

MaXis (11)
Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - negative - reverse phase (7)
Liquid Chromatography MS - positive - reverse-phase (5)
Liquid Chromatography MS - negative - reverse-phase (5)
Q Exactive (3)
Gas Chromatography MS - positive (3)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
LECO Pegasus 4D GCxGC-TOF-MS (2)
Nuclear Magnetic Resonance (NMR) - (2)
Liquid Chromatography MS - negative - HILIC (2)
Liquid Chromatography MS - positive - HILIC (2)
NextSeq 500 (1)
MicrOTOF-Q II (1)
MicrOTOF-QII (Bruker Daltonics) (1)
Q Exactive HF-X (1)
Instrument (1)
LTQ Orbitrap Elite (1)
Liquid Chromatography MS - positive - acquity-uplc-hss-t3 (1)
Liquid Chromatography MS - negative - acquity-uplc-hss-t3 (1)
Flow injection analysis MS – POS (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
Gas Chromatography MS - positive - low-polarity (1)
Liquid Chromatography MS - NEG - reverse phase (1)
Liquid Chromatography MS - POS - reverse phase (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Nuclear Magnetic Resonance (NMR) (1)
SYNAPT HDMS (Waters) (1)

Publication Date

2025 (22)
2026 (21)
2022 (15)
2019 (13)
2018 (12)
2021 (11)
2017 (10)
2010 (9)
2020 (8)
2015 (7)
2023 (7)
2024 (6)
2011 (5)
2013 (4)
2014 (3)
2009 (2)
2008 (2)
2005 (1)
2016 (1)

CHEBI ID

CHEBI:52742 (1)
CHEBI:9254 (1)
CHEBI:646 (1)
CHEBI:30924 (1)
CHEBI:358 (1)
CHEBI:11018 (1)
CHEBI:45866 (1)
CHEBI:10961 (1)
CHEBI:18710 (1)
CHEBI:35397 (1)
CHEBI:15193 (1)
CHEBI:15671 (1)
CHEBI:26849 (1)
CHEBI:18711 (1)
CHEBI:35398 (1)
CHEBI:43896 (1)
CHEBI:62010 (1)
CHEBI:73803 (1)
CHEBI:11835 (1)
CHEBI:17871 (1)
CHEBI:20078 (1)
CHEBI:1552 (1)
CHEBI:34008 (1)
CHEBI:138881 (1)
CHEBI:28635 (1)
CHEBI:73804 (1)
CHEBI:10245 (1)
CHEBI:42748 (1)
CHEBI:22389 (1)
CHEBI:12321 (1)

Metabolite Name

Phenylacetic acid (5)
Indolelactic acid (5)
Adenine (5)
Isobutyric acid (4)
Methionine (4)
Choline (4)
Guanine (4)
Threonine (4)
Riboflavin (4)
L-Phenylalanine (4)
Hypoxanthine (4)
Pandamarilactam 3x (3)
N-Propionylmethionine (3)
Ellagic acid (3)
Gallic acid (3)
2,8-Quinolinediol (3)
Kaempferol (3)
2,3-dihydrobenzofuran (3)
L,L-Cyclo(leucylprolyl) (3)
Indole-3-propionic acid (3)
Aspartate (3)
Naringenin (3)
Glycine (3)
Proline (3)
Arginine (3)
Tyrosine (3)
Valine (3)
Luteolin (3)
Quinolinic acid (3)
Acetic acid (3)

First Public Date

2024 (125)
2026 (112)
2025 (112)
2023 (81)
2022 (81)
2020 (77)
2021 (72)
2019 (69)
2018 (62)
2013 (48)
2014 (44)
2016 (41)
2017 (40)
2015 (26)
2012 (1)

Modelling Approach

Constraint-based model (4)
Differential equation model (1)
Metabolic network (1)

Lab affiliation

Competence Center for Food and Fermentation Technologies (5)
Wageningen University (3)
Competence Center of Food and Fermentation Technology (2)
Head of Microbiology Unit, SCKCEN (2)
Associate Professor Departamento de Bioquímica y Biología Molecular, Universidad de Córdoba, Campus de Excelencia Internacional CeiA3, Córdoba, Spain. (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Stasse 4 85354 Freising (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University Munich, Freising, Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry, Technical University of Munich, Freising, Germany (1)
Beijing Key Lab of Bioprocess, National Energy R&D Center for Biorefinery, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, PR China (1)
Bielefeld University, Center for Biotechnology CeBiTec, (1)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Novara (NO),Italy. (1)
Biomolecular Mass Spectrometry and Proteomics, Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, the Netherlands (1)
Biotechnology Laboratory, Department of Biological Applications and Technologies, University of Ioannina, 45110 Ioannina, Greece (1)
Biotechnology Laboratory, Department of Biological Applications and Technologies, Universityof Ioannina, 45110 Ioannina, Greece (1)
Center of Food and Fermentation Technologies (1)
Charité Universitätsmedizin Berlin (1)
Departamento de Bioquímica y Biología Molecular, Universidad de Córdoba; Campus de Excelencia Internacional CeiA3, 14071 Córdoba (Spain) (1)
Department of Applied Chemistry, Institute of Natural Science, Global Center for Pharmaceutical Ingredient Materials, Kyung Hee University, Yongin, Republic of Korea; Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, Republic of Korea. (1)
Department of chemistry and Bioscience, Aalborg University (1)
Division of Plant Science and Technology, College of Agriculture Food and Natural Resources and Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA (1)
FARRP, UNL 1901 North 21st Street, University of Nebraska-Lincoln Lincoln, NE 68588-6205 (1)
Faculty of Biosciences, NMBU-Norwegian University of Life Sciences, Post Office Box 5003 1432, Ås Norway (1)
Faculty of Biotechnology, Chemistry and Food Science, NMBU - Norwegian University of Life Sciences, Norway (1)
Food Allergy Research and Resource Program, Department of Food Science and Technology, University of Nebraska-Lincoln (1)
Food Chemistry, Department of Chemistry and Pharmacy, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Germany (1)
Head of Mass Spectrometry and Proteomics, University of Reading (1)
IBERS, Aberystwyth University (1)
INBIOTEC (1)
Institute for Systems Biology (1)

IsPrivate

False (8)

Model Flag

Non Kinetic (5)

Submitter Keywords

FROG (1)

Classification

bacteria (19)
fungi (8)

Modification

Not available (2)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (10)
RNA-seq of coding RNA (3)
Unknown experiment type (1)

Release Date

2025 (721)
2023 (702)
2022 (617)
2024 (570)
2021 (520)
2020 (455)
2019 (316)
2018 (256)
2017 (146)
2026 (125)
2016 (122)
2015 (82)
2014 (70)
2013 (57)
2011 (44)
2012 (43)
2010 (25)
2008 (21)
2009 (20)
2007 (16)
2003 (12)
2006 (5)
2005 (5)
2001 (5)
2002 (4)
2004 (3)
2000 (3)
1999 (3)
1998 (2)

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Role of jeotgal, a Korean traditional fermented fish sauce, in microbial dynamics and metabolite profiles during kimchi fermentation

We investigated the effects of jeotgal (fermented fish sauce) on kimchi fermentation, with or without saeu-jeot and myeolchi-jeot. Bacterial community analysis showed that Leuconostoc, Weissella, Lactobacillus, and Tetragenococcus were the dominant genera; however, their succession depended on the p...

2019-02-07 | MTBLS654 | MetaboLights

Gut microbiota and fermentation-derived branched chain hydroxy acids mediate health benefits of yogurt consumption in obese mice

Meta-analyses suggest that yogurt consumption reduces type 2 diabetes incidence in humans, but the molecular basis of these observations remains unknown. Here we show that dietary yogurt intake preserves whole-body glucose homeostasis and prevents hepatic insulin resistance and liver steatosis in a ...

2022-02-03 | MTBLS442 | MetaboLights

Metagenomics and untargeted metabolomics analyses to unravel the formation mechanism of characteristic metabolites in mung bean sour liquid during different fermentation stages

Using LC-MS metabolomics technology, identify the key metabolites during the fermentation of Mung bean sour liquid (MBSL) and analyze their categories. Study the dynamic changes of these metabolites at different fermentation stages, clarify the relationships between the metabolites and the flavor (s...

2025-07-01 | MTBLS12446 | MetaboLights

food fermentation metagenome

food fermentation metagenome Raw sequence reads

PRJNA760782 | ENA

Untargeted metabolomic profiling of jejunal contents from yaks receiving dietary microbial fermentation-derived supplementation

This project contains untargeted LC–MS/MS metabolomic data generated from jejunal content samples of adult male yaks under different dietary conditions. Samples from yaks fed a basal diet and those receiving dietary microbial fermentation-derived supplementation were analyzed to characterize changes...

2026-06-28 | MTBLS14879 | MetaboLights

food fermentation metagenome

PRJNA675448 | ENA

food fermentation metagenome

PRJNA547860 | ENA

food fermentation metagenome

PRJNA675449 | ENA

food fermentation metagenome

PRJNA265030 | ENA

food fermentation metagenome

food fermentation metagenome sequencing

PRJNA1374453 | ENA