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TranscriptomicsRibosome profiling study of dom34 and hbs1 knockout strains using short (16-nt) and long (28-nt) monosome-protected footprints and disome-protected footprints
Ribosomes that stall before completing peptide synthesis must be recycled and returned to the cytoplasmic pool. The protein Dom34 and cofactors Hbs1 and Rli1 can dissociate stalled ribosomes in vitro, but the identity of targets in the cell is unknown. Here we use ribosome profiling methodology to r...
ORGANISM(S): Saccharomyces cerevisiae 
2013-12-19 | E-GEOD-52968 | biostudies-arrayexpress
TranscriptomicsDistinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments
During translation elongation, the ribosome ratchets along its mRNA template, incorporating each new amino acid and translocating from one codon to the next. The elongation cycle requires dramatic structural rearrangements of the ribosome. We show here that deep sequencing of ribosome-protected mRNA...
ORGANISM(S): Saccharomyces cerevisiae 
2014-06-10 | E-GEOD-58321 | biostudies-arrayexpress
GenomicsNuclease footprints in sperm project past and future chromatin regulatory events
Nuclease footprints in sperm project past and future chromatin regulatory events
PRJNA312533 | ENA
TranscriptomicsHigh-resolution mapping of ribosome footprints from Arabidopsis thaliana
Post-transcriptional gene regulation plays a significant role in the response to oxygen deprivation. Here, we utilized advances in next-generation sequencing technology to examine changes in transcriptional control, mRNA loading on to polysome, and regulation of ribosome activity during mRNA transla...
ORGANISM(S): Arabidopsis thaliana 
2013-11-23 | E-GEOD-50597 | biostudies-arrayexpress
GenomicsTracking of dCas9-methyltransferase footprints
Tracking of dCas9-methyltransferase footprints
PRJNA347354 | ENA
GenomicsAnalysis of conditions leading to 3'UTR ribosome protected footprints
Analysis of conditions leading to 3'UTR ribosome protected footprints
PRJEB7901 | ENA
UnknownResource footprints and their ecosystem consequences.
Not available
S-EPMC5256307 | biostudies-literature
GenomicsChromatin footprints after double-hit stress
Chromatin footprints after double-hit stress
PRJNA825824 | ENA
GenomicsNuclease footprints in sperm project past and future chromatin regulatory events
Nuclear remodeling to an extreme condensed state is a hallmark of spermatogenesis. This is achieved by varied degrees of replacement of histones with protamines. Regions retaining nucleosomes may be of functional significance. To determine potential roles for somatic-like chromatin in the paternal g...
ORGANISM(S): Homo sapiens Mus musculus 
2016-05-04 | GSE78075 | GEO
UnknownHarmonizing corporate carbon footprints.
Not available
S-EPMC8536701 | biostudies-literature
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