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TranscriptomicsAffymetrix SNP array data for low-grade astrocytoma samples
Copy number analysis of 21 paediatric low-grade astrocytomas identified a discrete copy number gain of 1.9Mb in chromosome band 7q34. The gain was present in 12/14 cerebellar pilocytic astrocytomas. Subsequent analysis of tumour cDNA indentified a novel gene fusion between KIAA1549 and BRAF in these...
ORGANISM(S): Homo sapiens 
2010-04-09 | E-GEOD-14960 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human peripheral blood monocytes from a patient with a heterozygous deletion of the CARMA1 gene cultured with anti-CD3, anti-CD3 and anti-CD28 or lipopolysaccharide
PBMCs were isolated from whole blood taken from one patient and one healthy control. Cells were cultured in media (RPMI) alone, with 1µg/ml anti-CD3, with 1µg/ml anti-CD3 & 1µg/ml anti-CD28 or with 0.5ng/ml LPS. Cells were harvested after 24 or 48 hours, RNA isolated using Trizol, purified using R...
ORGANISM(S): Homo sapiens 
2022-04-01 | E-MTAB-101 | biostudies-arrayexpress
GenomicsICGC Oesophageal Adenocarcinoma sequence data - TLR_pathway_study - samples
upcoming publication
EGAD00001001960 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - dcc_release_28 - samples
WGS sequencing for 409 cases (832 samples) from the ICGC ESAD-UK project Tumours 50x Normals 30x HiSeq X BAM files These samples are all available in ICGC release 28
EGAD00001004137 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - 100_all_samples - samples
All samples from the "100" project
EGAD00001001457 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - 129_cohort - samples
Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - 129_cohort EAC whole genomic sequencing data - Publication Secrier & Li et al., 2016, Nature Genetics
EGAD00001002218 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - 100 - samples
Samples from the "100" project that are in the ICGC PanCancer project.
EGAD00001001071 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - mobile_elements - samples
Samples from Edwards et al 2015 - doi:10.1186/s12864-015-1685-z
EGAD00001001048 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - icgc_release_26 - samples
WGS sequencing for 303 cases (620 samples) from the ICGC ESAD-UK project Tumours 50x Normals 30x HiSeq X BAM files These samples are all available in ICGC release 26
EGAD00001003580 | EGA
GenomicsICGC Oesophageal Adenocarcinoma sequence data - chemo_cohort - samples
Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - chemo_cohort
EGAD00001002241 | EGA
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