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ProteomicsImproved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides
Computational, genomic, and proteomic approaches have been used to discover nonannotated proteincoding small open reading frames (smORFs). Some novel smORFs have crucial biological roles in cells and organisms, which motivates the search for additional smORFs. Proteomic smORF discovery methods are a...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-26 | MSV000084014 | MassIVE
TranscriptomicsS. coelicolor M752 SMM medium time course study
Antibiotic biosynthesis in Streptomyces species is controlled by a complex genetic and biochemical network of global and pathway specific regulators. Details of their precise interactions in mediating temporal and spatial expression of secondary metabolite genes remain poorly defined. In this study,...
ORGANISM(S): Streptomyces coelicolor 
2010-10-25 | E-GEOD-22398 | biostudies-arrayexpress
TranscriptomicsK562 polyA RNA-Seq
RNA-Seq reads and TopHat (Trapnell et al. Bioinformatics 2009) alignments of K562 cell-line transcriptome. These were used to validate the expression of short peptides idenitified by Mass-Spectrometry in K562 cells. K562 polyA+ RNA (Batch 1) and total RNA (batch 2) was purchased from Ambion. We use...
ORGANISM(S): Homo sapiens 
2012-11-14 | E-GEOD-34740 | biostudies-arrayexpress
UnknownAssessment of Motor Abilities and Physical Fitness in Youth in the Context of Talent Identification-OSF Test.
Not available
S-EPMC9655008 | biostudies-literature
ProteomicsStructural basis for lipid binding and function by an evolutionally conserved protein, Serum Amyloid A
Serum amyloid A (SAA) is a plasma protein that transports lipids during inflammation. To explore SAA solution conformations and lipid binding mechanism, we used hydrogen-deuterium exchange mass spectrometry, lipoprotein reconstitution, sequence analysis and molecular dynamics simulations. Solution ...
ORGANISM(S): Mus musculus (Mouse) 
2020-02-17 | PXD016391 | Pride
Hydrogen-deuterium exchange mass spectrometry  molecular dynamics simulations  lipoprotein nanoparticle  intrinsically disordered protein  β-hairpin misfolding intermediate  inflammation and immunity 
TranscriptomicsMethanococcus maripaludis S2 growth curve, tiling arrays
Experimentally mapped transcriptome structure of Methanococcus maripaludis S2 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 14 nt). Methanococcus maripaludis MM901, a wild type Methanococcus maripaludis S2 with an in fra...
ORGANISM(S): Methanococcus maripaludis S2 
2011-06-27 | E-GEOD-26777 | biostudies-arrayexpress
UnknownClinical Outcomes of Second- versus First-Generation Carotid Stents: A Systematic Review and Meta-Analysis.
Not available
S-EPMC9409706 | biostudies-literature
UnknownNon-contact physiological monitoring of preterm infants in the Neonatal Intensive Care Unit.
Not available
S-EPMC6908711 | biostudies-literature
UnknownAn adaptive cue selection model of allocentric spatial reorientation.
Not available
S-EPMC8582329 | biostudies-literature
TranscriptomicsTranscription profiling of human Hutchinson-Gilord progeria syndrome fibroblast cell lines with dominant mutation in the LMNA gene and age-matched normal controls
Hutchinson-Gilford progeria syndrome (HGPS) is a rare genetic disease with widespread phenotypic features resembling premature aging. HGPS was recently shown to be caused by dominant mutations in the LMNA gene, resulting in the in-frame deletion of 50 amino acids near the carboxyl terminus of the en...
ORGANISM(S): Homo sapiens 
2007-12-12 | E-GEOD-3860 | biostudies-arrayexpress
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