Francisella novicida

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Unknown (213)
Genomics (48)
Transcriptomics (25)
Proteomics (15)
Other (2)
Methylation profiling (1)
Metabolomics (1)

Organisms

Mus musculus (8)
Francisella tularensis subsp. novicida (8)
Francisella tularensis (6)
Francisella tularensis subsp. novicida U112 (6)
Homo sapiens (3)
Francisella (3)
Rickettsia typhi (2)
Orthohantavirus seoulense (2)
Orthohantavirus puumalaense (2)
Mammarenavirus choriomeningitidis (2)
Francisella tularensis subsp. mediasiatica (2)
Mycobacterium canetti (2)
Bartonella henselae (2)
Streptobacillus moniliformis (2)
Mycobacterium avium subsp. paratuberculosis (2)
Mycobacterium tuberculosis variant microti (2)
Cowpox virus (2)
Mycobacterium avium (2)
Bartonella quintana (2)
Rickettsia prowazekii (2)
Paslahepevirus balayani (2)
Yersinia enterocolitica (2)
Mycobacterium tuberculosis variant bovis (2)
Yersinia pseudotuberculosis (2)
Escherichia coli O157:H7 (2)
Yersinia pestis (2)
Campylobacter jejuni (2)
Francisella tularensis subsp. holarctica (2)
Francisella tularensis subsp. tularensis (2)
Francisella tularensis subsp. tularensis SCHU S4 (2)

Organisms

Francisella tularensis subsp. novicida (12)
Francisella tularensis subsp. novicida U112 (5)
Mus musculus (4)
Francisella tularensis (2)
Francisella cf. novicida Fx1 (1)
Francisella tularensis subsp. novicida FSC595 (1)
Francisella tularensis subsp. novicida FSC160 (1)
Francisella tularensis subsp. novicida FSC159 (1)
Francisella tularensis subsp. novicida PA10-7858 (1)
Francisella tularensis subsp. novicida F6168 (1)
Francisella tularensis subsp. novicida D9876 (1)
Francisella tularensis subsp. novicida GA99-3548 (1)
Francisella tularensis subsp. novicida FTG (1)
Francisella tularensis subsp. novicida GA99-3549 (1)
Francisella tularensis subsp. novicida FTE (1)
Saccharomyces cerevisiae (1)
Homo sapiens (1)

Repository

ENA (47)
geo (17)
pride (14)
biostudies-arrayexpress (12)
MassIVE (1)
MetaboLights (1)

Tissue

Cell suspension culture (3)
Bone marrow (1)
Cell culture (1)
Liver (1)
Macrophage (1)
Spleen (1)

Disease

Tularemia (2)
Primary immunodeficiency disease (1)

Technology Type

Mass Spectrometry (14)
Shotgun proteomics (12)
Bottom-up proteomics (2)
Mass spectrometry (1)

Instrument Platform

Q Exactive (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)

Publication Date

2015 (7)
2016 (5)
2009 (4)
2008 (4)
2017 (3)
2007 (3)
2024 (3)
2020 (3)
2018 (3)
2021 (3)
2012 (2)
2023 (2)
2022 (1)
2026 (1)
2019 (1)

CHEBI ID

CHEBI:59059 (1)
CHEBI:143859 (1)
CHEBI:89723 (1)
CHEBI:82344 (1)
CHEBI:89255 (1)
CHEBI:80946 (1)
CHEBI:88964 (1)
CHEBI:87429 (1)
CHEBI:4614 (1)
CHEBI:77927 (1)
CHEBI:133246 (1)
CHEBI:52052 (1)
CHEBI:89762 (1)
CHEBI:5672 (1)
CHEBI:89015 (1)
CHEBI:37070 (1)
CHEBI:78304 (1)
CHEBI:77928 (1)
CHEBI:89254 (1)
CHEBI:35986 (1)
CHEBI:77930 (1)
CHEBI:17700 (1)
CHEBI:41253 (1)
CHEBI:28878 (1)
CHEBI:16638 (1)
CHEBI:49000 (1)
CHEBI:48945 (1)
CHEBI:16310 (1)
CHEBI:15688 (1)
CHEBI:49019 (1)

Metabolite Name

Pyrazine, 2,5-dimethyl- (1)
Butanethioic acid, S-methyl ester (1)
Pyrazine, methyl- (1)
Methane, isocyanato- (1)
Pyrazine, tetramethyl- (1)
Phenol, 2,5-bis(1,1-dimethylethyl)- (1)
Butanoic acid, 3-methyl-, butyl ester (1)
1-Propanol, 3-(methylthio)- (1)
5-Hepten-2-one, 6-methyl- (1)
1-Butanol, 2-methyl- (1)
Acetic acid, butyl ester (1)
3-Octanone (1)
Methyl Isobutyl Ketone (1)
Butyl 2-methylbutanoate (1)
Butanoic acid, butyl ester (1)
Benzyl methyl ketone (1)
Butanoic acid, 2-methyl- (1)
Butanoic acid, 3-methyl- (1)
Butanal, 3-methyl- (1)
Propanoic acid, 2-methyl- (1)
Phenylethyl Alcohol (1)
1-Dodecanol (1)
2-Nonanone (1)
2-Heptanone (1)
2-Pentadecanone (1)
2-Nonanol (1)
2-Tridecanone (1)
1-Nonanol (1)
2-Undecanol (1)
2-Undecanone (1)

First Public Date

2013 (12)
2014 (9)
2015 (6)
2025 (3)
2024 (3)
2020 (3)
2017 (3)
2016 (3)
2023 (2)
2022 (1)
2019 (1)
2018 (1)

Classification

bacteria (30)

Study type

Transcription profiling by array (9)
Other (2)
Unknown experiment type (1)

Release Date

2017 (19)
2018 (19)
2021 (16)
2016 (15)
2019 (14)
2022 (13)
2010 (12)
2015 (11)
2009 (11)
2008 (11)
2020 (11)
2014 (11)
2024 (10)
2012 (9)
2013 (8)
2011 (8)
2007 (7)
2025 (6)
2023 (6)
2006 (3)
2004 (2)
2003 (1)
2002 (1)
2026 (1)

Lab affiliation

Plateforme protéomique 3P5-Necker, Université Paris Descartes - Structure Fédérative de Recherche Necker, INSERM US24/CNRS UMS3633, Paris 75014, France (2)
Department of Clinical Microbiology,Umeå University, Umeå, Sweden (1)
EDyP (1)
Key Laboratory for Experimental Teratology of the Ministry of Education, Advanced Medical Research Institute, Qilu Hospital, Cheeloo College of Medicine, Shandong University (1)
Max Planck Institute for Molecular Genetics, Mass Spectrometry Facility (1)
Necker Proteomics, SFR Necker, INSERM US24, Paris, France (1)
Necker proteomic platform, , PPN-3P5, Structure Federative de Recherche Necker, INSERM US24, (1)
Pacific Northwest National Laboratory (1)
Pacific Northwest National Laboratory, USA (1)
Plateforme Protéome Institut Necker, PPN, Structure Fédérative de Recherche Necker INSERM US24-CNRS UMS 3633 (1)
Proteomics Laboratory Structure Federative Recherche Necker, INserm US24Paris , France (1)
University of Victoria – Victoria, British Columbia, Canada V8P 3E6; International Centre for Cancer Vaccine Science, Gdansk, Poland (1)
Université Paris Cité, INSERM UMR-S1151, CNRS UMR-S8253, Institut Necker Enfants Malades, F-75015 Paris, France. (1)

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Francisella Expression Microarray Analysis

Francisella tularensis is a Gram-negative bacterium that is highly virulent in humans, causing the disease tularemia. F. novicida is closely related to F. tularensis and exhibits high virulence in mice, but is avirulent in healthy humans. A F. novicida-specific gene cluster (FTN0451-FTN0456) encodes...

ORGANISM(S): Francisella novicida

2012-11-30 | E-GEOD-39647 | biostudies-arrayexpress

Metabolic Profiling of Volatile Organic Compounds (VOCs) Emitted by the Pathogens Francisella tularensis and Bacillus anthracis in Liquid Culture

We conducted comprehensive (untargeted) metabolic profiling of volatile organic compounds (VOCs) emitted in culture by bacterial taxa Francisella tularensis (F. tularensis) subspecies novicida and Bacillus anthracis (B. anthracis) Sterne, surrogates for potential bacterial bioterrorism agents, as we...

2020-08-20 | MTBLS1737 | MetaboLights

In vivo screen of Francisella tularensis subsp. novicida mutants in sequence defined transposon library

We used an inhalation mouse model of infection to query a collection of 2149 mutants in a Francisella tularensis subsp. novicida background for genes required for growth, survival and systemic dissemination. A microarray-based genome-wide negative selection screen (Microarray tracking of transposon ...

ORGANISM(S): Francisella tularensis subsp. novicida

2008-12-30 | E-GEOD-11297 | biostudies-arrayexpress

Intra-macrophage Expression data of Francisella tularensis novicida U112

These samples are part of an experiment comparing the expression profiles of Francisella tularensis novicida grown in chemically defined medium and bacteria isolated 24 hours post infection of J774 macrophages to identify virulence factors Custom microarray submitted previously was used as the platf...

ORGANISM(S): Francisella tularensis subsp. novicida U112

2017-05-02 | E-GEOD-75689 | biostudies-arrayexpress

Transcription profiling of human monocytes infected with Francisella tularensis

Differential expression in human peripheral blood monocytes between F. novicida-infected and uninfected, and between Francisella tularensis tularensis isolate Schu S4 and uninfected. The goal was to examine genomewide transcriptional reponses to these two strains, and identify differentially-regulat...

ORGANISM(S): Homo sapiens

2008-10-25 | E-GEOD-12108 | biostudies-arrayexpress

Francisella tularensis subsp. novicida FSC595

Francisella tularensis subsp. novicida FSC595 Genome sequencing

PRJNA73395 | ENA

Francisella tularensis subsp. novicida U112

Francisella tularensis subsp. novicida U112 Genome sequencing

PRJNA236529 | ENA

Francisella tularensis subsp. novicida D9876

Francisella tularensis subsp. novicida D9876 Genome sequencing

PRJNA235892 | ENA

Francisella tularensis subsp. novicida F6168