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UnknownLigand preference and orientation in b- and c-type heme-binding proteins.
Not available
S-EPMC2727070 | biostudies-literature
ProteomicsPeptideForest: Semi-supervised machine learning integrating multiple search engines for peptide identification
We introduce PeptideForest, a semi-supervised machine learning approach that integrates the assignment of peptides to mass spectra from multiple algorithms to train a random forest classifier, thereby combining the results from different search engines. PeptideForest increases the number of peptide-...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2025-06-02 | PXD056915 | Pride
Human Machine learning E. coli Statistical post-processing Peptide identification 
ProteomicspyQms - partial labeled proteome gold standard
" The novel mass spectrometry quantitation tool pyQms can calculate isotope patterns for molecules that have any isotope enrichment or combinations of, e.g. 13C or 15N and allows partially labeled molecules to be quantified as well, as observed in pulse or pulse-chase experiments where enrichment le...
ORGANISM(S): Chlamydomonas reinhardtii 
2017-08-10 | PXD003236 | Pride
Lc-ms/ms Gold standard dataset 
Unknownp3d--Python module for structural bioinformatics.
Not available
S-EPMC2744707 | biostudies-literature
UnknownIdentification of key residues for pH dependent activation of violaxanthin de-epoxidase from Arabidopsis thaliana.
Not available
S-EPMC3338714 | biostudies-literature
UnknownpyQms enables universal and accurate quantification of mass spectrometry data.
Not available
S-EPMC5629261 | biostudies-literature
OtherPGRL1-mediated cyclic electron flow is crucial for acclimation to anoxia and complementary to non-photochemical quenching in stress adaptation.
Data from PeptideAtlas, [[http://www.peptideatlas.org/PASS/PASS00384 PASS00384]]. Experiment: set1, file: BK_physco_16022013_1_27.mzML. Published as part of Plant Physiol. 2014 Jun 19 . From the Abstract: {{i}} To investigate the functional importance of PGRL1 for photosynthetic performances in the...
ORGANISM(S): Physcomitrella_patens 
GPM11210028492 | GPMDB
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