Functional-proteomics

Show results for

Unknown (4063)
Proteomics (2396)
Genomics (497)
Transcriptomics (301)
Other (46)
Models (36)
Metabolomics (23)
Multiomics (10)
Genomic (3)
Methylation profiling (2)
Clinical (1)

Organisms

Homo sapiens (511)
Mus musculus (139)
Rattus norvegicus (17)
Arabidopsis thaliana (14)
Macaca mulatta (14)
Staphylococcus aureus (7)
Triticum aestivum (7)
Saccharomyces cerevisiae (6)
Sus scrofa (5)
Gallus gallus (5)
Plasmodium cynomolgi strain B (5)
Drosophila melanogaster (4)
Plasmodium knowlesi (4)
Geobacter sulfurreducens PCA (3)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (3)
Bacteria (3)
Caenorhabditis elegans (3)
Solanum tuberosum (2)
Bacteroides cellulosilyticus (2)
Dorea longicatena DSM 13814 (2)
Shigella flexneri 2a str. 301 (2)
Bartonella henselae (2)
Plasmodium falciparum 3D7 (2)
Plasmodium coatneyi (2)
Tetrahymena thermophila (2)
Saccharomyces paradoxus (1)
Dictyostelium discoideum (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Brassica napus (1)
Oryza sativa (1)

Organisms

Homo sapiens (193)
Mus musculus (73)
Macaca mulatta (13)
Rattus norvegicus (6)
Arabidopsis thaliana (4)
Drosophila melanogaster (3)
Caenorhabditis elegans (3)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Tetrahymena thermophila (2)
Oryza sativa Japonica Group (2)
Saccharomyces cerevisiae (2)
Zea mays (2)
Neurospora crassa (2)
Legionella pneumophila str. Paris (1)
Shigella flexneri 2a str. 301 (1)
Bartonella henselae (1)
Plasmodium falciparum 3D7 (1)
Dickeya solani (1)
Fusarium fujikuroi (1)
Enterobacter cloacae (1)
Staphylococcus aureus (1)
Macleaya microcarpa (1)
Stutzerimonas stutzeri ATCC 14405 = CCUG 16156 (1)
Morone saxatilis (1)
Rhizobium etli CFN 42 (1)
Flavobacterium sp. ACAM 123 (1)
Macleaya cordata (1)
Trichoplusia ni (1)
Bradyrhizobium diazoefficiens USDA 110 (1)
Apilactobacillus kunkeei (1)

Repository

pride (1664)
ENA (432)
geo (313)
iProX (242)
MassIVE (191)
PeptideAtlas (112)
PAXDB (104)
biostudies-arrayexpress (80)
jPOST (62)
BioModels (36)
MetaboLights (21)
PanoramaPublic (19)
GPMDB (16)
EGA (7)
dbGaP (3)
GNPS (2)

Tissue

Cell culture (382)
Epithelial cell (96)
Digestive System (95)
Brain (91)
Plant cell (63)
Colon (53)
Heart (49)
Liver (47)
Fibroblast (43)
Blood plasma (40)
Kidney (39)
Permanent cell line cell (39)
Blood (33)
Lung (30)
Leaf (29)
Colon epithelial cell (27)
Macrophage (26)
Blood serum (25)
Stem cell (25)
B cell (24)
Whole body (24)
Hepatocyte (23)
Blood cell (21)
T cell (20)
Primary cell (19)
Testis (19)
Cell suspension culture (16)
Skin (16)
Others (12)
Male Reproductive System (2)

Disease

Colon cancer (66)
Disease free (39)
Breast cancer (32)
Alzheimer's disease (19)
Not Available (16)
Malignant neoplasm of ovary (14)
Cardiovascular system disease (13)
Lung cancer (12)
Lymphoma (12)
Acute leukemia (9)
Glioblastoma (8)
Melanoma (8)
Wounds and Injuries (8)
Bacterial sepsis (7)
Type 2 diabetes mellitus (7)
COVID-19 (6)
Cervix carcinoma (6)
Parkinson's disease (6)
Brain glioblastoma multiforme (5)
Malaria (5)
Pancreatic ductal adenocarcinoma (5)
Plasmodium falciparum malaria (5)
Prostate adenocarcinoma (5)
Age related macular degeneration (4)
Amyotrophic lateral sclerosis (4)
Duchenne muscular dystrophy (4)
Lung adenocarcinoma (4)
Multiple myeloma (4)
Locally advanced rectal cancer (1)
Colorectal Neoplasms (1)

Technology Type

Mass Spectrometry (1664)
Shotgun proteomics (854)
Bottom-up proteomics (390)
Data-dependent acquisition (180)
Affinity purification coupled with mass spectrometry proteomics (149)
Gel-based experiment (143)
Data-independent acquisition (120)
SWATH MS (64)
Top-down proteomics (56)
HDMSE (26)
SRM/MRM (24)
Mass spectrometry (18)
Chemical cross-linking coupled with mass spectrometry proteomics (13)
All-ion fragmentation (10)
DiaPASEF (10)
Affinity proteomics (7)
Mass spectrometry imaging (4)
Mass spectrometry assay (3)
MSE (3)
Metaproteomics (2)
Proteogenomics (2)
RNA mass spectrometry (2)
Illumina HumanMethylation450K, Illumina HiSeq 2500, Illumina InfiniumCoreExome-24v1-1_A, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HumanMethylation450K, Illumina InfiniumCoreExome-24v1-1_A (1)
AB SOLiD System 3.0 (1)
Glycoproteomics (1)
Immunopeptidomics (1)
Olink affinity proteomics (1)
PAcIFIC (1)

Instrument Platform

LTQ Orbitrap Velos (140)
Q Exactive (53)
Orbitrap Fusion Lumos (22)
Instrument (16)
Orbitrap Fusion (12)
Q Exactive HF-X (11)
Q Exactive Plus (11)
Orbitrap Eclipse (10)
LTQ Orbitrap (8)
Illumina HiSeq 2500 (7)
Orbitrap Exploris 480 (7)
Q Exactive HF (6)
TimsTOF Pro (6)
LTQ (6)
LTQ Orbitrap Elite (5)
Synapt G2-S HDMS (5)
TripleTOF 6600 (5)
GC MS (4)
LTQ Orbitrap XL (4)
Illumina HiSeq 2000 (3)
MALDI Synapt G2-S HDMS (3)
GC-MS (3)
Impact (3)
TripleTOF 5600 (3)
Illumina Genome Analyzer IIx (2)
NextSeq 2000 (2)
Coulter Automated Workstation Biomek i7 Hybrid (1)
RNeasy 96-well plate kit (1)
None (1)
Illumina NovaSeq 6000 (1)

Publication Date

2025 (396)
2026 (390)
2022 (313)
2020 (258)
2024 (246)
2023 (222)
2021 (210)
2019 (146)
2014 (139)
2017 (120)
2018 (106)
2015 (93)
2016 (89)
2013 (31)
2011 (15)
2010 (14)
2012 (10)
2009 (8)
2008 (6)
2005 (3)
2007 (3)
2003 (2)
2002 (2)
2006 (1)

UNIPROT ID/AC

A0A1D6CXJ5_WHEAT (10)
A0A3B6B4B8_WHEAT (10)
A0A3B6MQM0_WHEAT (10)
A0A3B6QNV0_WHEAT (10)
A0A3B6TMN0_WHEAT (10)
A4K4Z0_WHEAT (10)
CALM_WHEAT (10)
CYB_WHEAT (10)
EF1B_WHEAT (10)
W5FAY5_WHEAT (10)
4565.Traes_4DS_8D47B4C37.1 (9)
A0A077RXF0_WHEAT (9)
A0A3B5ZZB3_WHEAT (9)
A0A3B6B445_WHEAT (9)
A0A3B6MTB1_WHEAT (9)
A0A3B6QGJ4_WHEAT (9)
A0A3B6TMY1_WHEAT (9)
PSAB_WHEAT (9)
W5FX66_WHEAT (9)
4565.Traes_3B_FFA902DFC.1 (8)
4565.Traes_7BS_9318744B2.1 (8)
A0A1D6CXT4_WHEAT (8)
A0A3B6IT96_WHEAT (8)
E6Y289_WHEAT (8)
RL30_WHEAT (8)
W5C4N4_WHEAT (8)
W5FEU1_WHEAT (8)
4565.Traes_3B_4EFCCC882.1 (7)
4565.Traes_5BL_423673029.1 (7)
4565.Traes_5BL_77F9DBF02.1 (7)

ENSEMBL ID

ENSG00000170477 (109)
ENSG00000229353 (49)
ENSG00000147251 (27)
ENSG00000247315 (7)
ENSG00000176092 (2)
ENSG00000214897 (2)
ENSMUSG00000027651 (2)
ENSMUSP00000141097 (2)
ENSG00000204131 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000072849 (1)

CHEBI ID

CHEBI:16610 (36)
CHEBI:42504 (35)
CHEBI:32365 (35)
CHEBI:17306 (35)
CHEBI:17458 (33)
CHEBI:29009 (33)
CHEBI:27485 (33)
CHEBI:15630 (33)
CHEBI:27969 (33)
CHEBI:16600 (33)
CHEBI:28031 (33)
CHEBI:45919 (33)
CHEBI:28096 (33)
CHEBI:15544 (33)
CHEBI:42394 (33)
CHEBI:15901 (33)
CHEBI:17636 (33)
CHEBI:18272 (33)
CHEBI:27820 (33)
CHEBI:28790 (33)
CHEBI:15545 (33)
CHEBI:29025 (33)
CHEBI:15746 (33)
CHEBI:44247 (33)
CHEBI:53152 (33)
CHEBI:28387 (33)
CHEBI:15555 (33)
CHEBI:17821 (33)
CHEBI:30817 (33)
CHEBI:16581 (33)

Metabolite Name

Leucine (3)
Spermidine (3)
Methyl palmitate (3)
Glutamine (3)
Aspartic acid (3)
Formononetin (3)
Daidzein (3)
Ethyl p-coumarate (2)
Prunin (2)
Naringenin 7-O-beta-D-glucoside (2)
L-Hydroxylysine (2)
(R)-Prunasin (2)
Licoagroside B (2)
Esculetin (2)
2-Ketohexanoic acid (2)
1-methylpseudouridine (2)
Dihydrokaempferol (2)
Mitragynine (2)
Melezitose (2)
Phenol (2)
3,4-Dihydroxybenzaldehyde (2)
Tetradecanoic acid (2)
Schaftoside (2)
Luteolin (2)
Oleanolic acid (2)
Daidzin (2)
(-)-Jasmonic acid (2)
Orotic acid (2)
DL-3,4-Dihydroxyphenyl glycol (2)
(S)-Malate (2)

First Public Date

2026 (80)
2025 (77)
2024 (60)
2021 (33)
2022 (29)
2014 (26)
2023 (22)
2020 (21)
2019 (21)
2017 (16)
2016 (14)
2013 (12)
2018 (11)
2015 (9)
2011 (1)

Modelling Approach

Constraint-based model (3)

Study status

Terminated (1)

Lab affiliation

Functional Proteomics, ICR (32)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (31)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (30)
Wellcome Trust Sanger Institute (26)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (9)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (8)
USDA-ARS (8)
BioArCh, University of York, UK (6)
Institute for Cardiovascular Regeneration, Centre for Molecular Medicine, Goethe University Frankfurt am Main, Germany (6)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (6)
Moffitt Cancer Center Tampa, FL, USA (6)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (6)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI), 07745 Jena, Germany (5)
Research Group Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München, Germany (5)
1) Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland 2) Faculty of Science, University of Zurich, Zurich, Switzerland (4)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg (4)
Department of Biomedical Sciences, University of Padova, Italy (4)
Department of Chemistry, National and Kapodistrian University of Athens, 15784 Zografou, Greece (4)
Head of Proteomics (4)
ICR, Functional Proteomics (4)
Institut für Kardiovaskuläre Physiologie, Goethe-Universität, Frankfurt am Main, Germany (4)
Institute of Cancer Research, London (4)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (4)
LIST-ERIN-BEAP Bascharage1 Luxembourg (4)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg Germany (4)
Medical Proteomics Unit, Research Department, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand (4)
Wageningen University (4)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (3)
Austrian Centre of Industrial Biotechnology (ACIB), Petersgasse 14, 8010 Graz, Austria; Medical University of Graz, Institute of Pathology, Research Unit Functional Proteomics and Metabolic Pathways, Stiftingtalstrasse 24, 8010 Graz, Austria; Omics Center Graz, BioTechMed-Graz, Stiftingtalstrasse 24, 8010 Graz, Austria. (3)

Keyword

Phase-II-Study (1)
Second-line-treatment (1)
Vectibix (1)
Open-label (1)
Randomized (1)
Colorectal (1)
Metastatic (1)
KRAS (1)
Panitumumab (1)
Capecitabine (1)
Oxaliplatin (1)

IsPrivate

False (36)

Model Flag

Non Kinetic (33)

Classification

bacteria (6)
protozoa (1)
fungi (1)

Modification

Not available (9)
15.994915 (7)
42.010565 (7)
57.021464 (6)
-17.026549 (4)
45.029395 (4)
0.984016 (3)
2x(15)N labeled L-lysine (3)
4-tetrahydrothiazine-3-carboxylic acid (3)
4x(15)N labeled L-arginine (3)
+3amu) (2)
4 (2)
4x(2)H labeled dimethylated residue (2)
6-dioxaoctanediamine derivatized cysteine (2)
N6-dimethyl-L-lysine (2)
-18.010565 (1)
-63.998286 (1)
10.008269 (1)
14.01565 (1)
227.126991 (1)
27.994915 (1)
31.989829 (1)
32.056407 (1)
4x(2)H labeled dimethylated L-lysine (1)
6.020129 (1)
9.030194 (1)
Heavy form - site K (1)
Light form - site K (1)
N6 (1)

Study type

Transcription profiling by array (41)
RNA-seq of coding RNA (17)
ChIP-seq (5)
Other (3)
Transcription profiling by tiling array (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
RIP-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)
Interventional (1)

Release Date

2025 (543)
2022 (437)
2021 (377)
2023 (372)
2024 (369)
2020 (304)
2019 (232)
2017 (206)
2016 (194)
2018 (163)
2015 (162)
2014 (135)
2013 (111)
2026 (94)
2010 (91)
2011 (86)
2012 (73)
2009 (68)
2008 (45)
2007 (23)
2006 (16)
2005 (15)
2004 (12)
2003 (6)
2002 (6)
2000 (2)
2001 (1)

Location

Germany (1)

Previous page
1 / 737
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 737
Next page

Sort by:

Relevance

Page size

Functional proteomics identified an upstream trancription complex promoting piRNA biogenesis

PRJNA448738 | ENA

Functional proteomics identified a PICS complex required for piRNA maturation and chromosome segregation

PRJNA540207 | ENA

Combined SNPs sequencing and allele specific proteomics capture reveal functional causality underpinning the 2p25 prostate cancer susceptibility locus

PRJNA1212024 | ENA

Functional proteomics identified an upstream trancription complex promoting piRNA biogenesis

Here we used functional proteomics approaches to identify an upstream transcription complex (USTC) that is required for piRNA biogenesis. The complex contains PRDE-1, SNPC-4, TOFU-4, and TOFU-5, all of which are enriched on the two piRNA clusters on chromosome IV and form distinct piRNA foci in the ...

ORGANISM(S): Caenorhabditis elegans

2019-04-04 | GSE112682 | GEO

Platelet membrane proteomics - Platelet membrane proteomics: a novel repository for functional research

Not available

ORGANISM(S): Homo sapiens (Human)

2009-08-24 | PRD000068 | Pride

Implications of functional proteomics in breast cancer.

Not available

S-EPMC3983827 | biostudies-literature

Cytoskeleton and nuclear lamina affection in recessive osteogenesis imperfecta: A functional proteomics perspective.

Not available

S-EPMC5584732 | biostudies-literature