Gallus - OmicsDI

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Genomics (2616)
Transcriptomics (1626)
Unknown (853)
Proteomics (326)
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Metabolomics (49)
Methylation profiling (23)
Models (1)

Organisms

Gallus gallus (1884)
Mus musculus (210)
Homo sapiens (185)
Rattus norvegicus (42)
Macaca mulatta (27)
Drosophila melanogaster (24)
Anas platyrhynchos (19)
Caenorhabditis elegans (19)
Coturnix japonica (17)
Monodelphis domestica (16)
Meleagris gallopavo (16)
Campylobacter jejuni (10)
Ornithorhynchus anatinus (9)
Arabidopsis thaliana (8)
Gorilla gorilla (8)
Zea mays (7)
Saccharomyces cerevisiae (7)
Taeniopygia guttata (7)
Tetraodon nigroviridis (6)
Columba livia (6)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Bombyx mori (4)
Eimeria tenella (4)
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Synthetic plasmid (1)
Pantherophis obsoletus lindheimeri (1)
Escherichia coli APEC O1 (1)
Campylobacter jejuni subsp. jejuni 81116 (1)
Clostridium perfringens (1)

Organisms

Gallus gallus (1969)
Gallus gallus gallus (66)
Gallus (35)
Gallus sp. (12)
chicken gut metagenome (8)
gut metagenome (7)
Escherichia coli (4)
Homo sapiens (4)
Petromyzon marinus (3)
Gallus varius (2)
Gallus sonneratii (2)
Gallus lafayettii (2)
Gallus gallus spadiceus (1)
Centrocercus minimus (1)
Colinus virginianus (1)
Phasianidae (1)
Python bivittatus (1)
Parus major (1)
Aves (1)
Dermanyssus gallinae (1)
rodent metagenome (1)
Gallus gallus murghi (1)
Psittacula krameri (1)
bird metagenome (1)
Salmonella enterica subsp. enterica serovar Enteritidis (1)
Limosilactobacillus fermentum (1)
Mus musculus (1)

Repository

ENA (2312)
geo (1357)
biostudies-arrayexpress (672)
pride (208)
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EVA (23)
jPOST (11)
MetabolomicsWorkbench (5)
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GPMDB (3)
GNPS (2)
ExpressionAtlas (1)
BioModels (1)
EGA (1)
NODE (1)

Tissue

Cell culture (25)
Egg (16)
Blood plasma (12)
Liver (12)
Embryo (11)
B cell (8)
Inner ear (6)
Bone (6)
Brain (6)
Whole body (6)
Epithelial cell (6)
Pectoral muscle (5)
Sperm (5)
Tendon (5)
Fibroblast (5)
Primary cell (5)
T cell (5)
Cecum (4)
Ear hair cell (4)
Skin (4)
Heart (4)
Lung (4)
Blood (4)
Milk (3)
Kidney (3)
Macular hair cell (2)
Bursa of Fabricius (2)
Utricle (2)
Uterine fluid (2)
Intestine (1)

Disease

Influenza (4)
Not Available (3)
Salmonella (3)
Avian influenza (3)
H9N2 infected (2)
Normal (2)
Infected with IBDV strain F52/70 (1)
Normal (control treated) (1)
Mock infected (1)
Control (1)
Infected (1)
IBDV infected (1)
Eimeria maxima infected (1)
Chicken Anaemia Virus infected (1)
Normal (untreated) (1)
Non infected (1)
Enteritis (1)
Lameness (1)
Acute enteritis (1)
Systemic inflammatory response syndrome (1)
Retinitis (1)
Chronic neutrophilic leukemia (1)
Infertility (1)
Congenital heart disease (1)
Salmonella infectious disease (1)
Bacterial infectious disease (1)
Polycystic Kidney (1)
Non-small cell lung carcinoma (1)
Severe acute respiratory syndrome (1)
Osteoarthritis (1)

Technology Type

Mass Spectrometry (213)
Shotgun proteomics (110)
Bottom-up proteomics (37)
Mass spectrometry (28)
Data-dependent acquisition (20)
Gel-based experiment (19)
Affinity purification coupled with mass spectrometry proteomics (19)
Mass spectrometry assay (13)
Chemical cross-linking coupled with mass spectrometry proteomics (12)
Data-independent acquisition (10)
Top-down proteomics (10)
SWATH MS (6)
ESI (4)
SRM/MRM (4)
Metaproteomics (3)
HDMSE (3)
Mass spectrometry imaging (2)
MSE (2)
Whole Genome Sequencing (1)
NMR spectroscopy (1)
EI (1)

Instrument Platform

Illumina HiSeq 2500 (23)
NextSeq 550 (19)
Illumina HiSeq 2000 (14)
Illumina HiSeq 4000 (14)
NextSeq 500 (13)
Illumina NovaSeq 6000 (10)
Illumina Genome Analyzer IIx (5)
Illumina HiSeq 3000 (4)
ScanArray 5000 [PerkinElmer] (3)
NextSeq 2000 (3)
Illumina HiSeq 1500 (3)
Illumina MiSeq (3)
Chromium 10x (2)
GenePix Personal 4100A [Axon Instruments] (2)
DNA Microarray Scanner BA [Agilent Technologies] (2)
DNBSEQ-G400 (2)
10x 3’ single-cell mRNA v3 kit (10x Genomics) (1)
UCHC CAM HPC cluster (1)
GeneQuant DNA/RNA caluculator (1)
Polytron (1)
Agilent Technologies Microarray Scanner (1)
Nimble gene 12 x 135 k custom gene expression arrays (1)
NimbleGen MS2000 (1)
Bioanalyzer „Agilent 2100 Expert (1)
Agilent G205C Scanner, 3µm (1)
AB SOLiD 4 System (1)
Variable Atmosphere Incubator (1)
Illumina NovaSeq X (1)
Ion Torrent Proton (1)
BGISEQ-500 (1)

Publication Date

2025 (193)
2021 (146)
2023 (139)
2015 (139)
2012 (128)
2026 (126)
2018 (126)
2013 (126)
2010 (126)
2016 (124)
2019 (123)
2020 (121)
2022 (118)
2017 (117)
2014 (111)
2011 (108)
2024 (91)
2009 (75)
2008 (69)
2007 (39)
2006 (13)
2005 (7)
2004 (5)

CHEBI ID

CHEBI:17368 (6)
CHEBI:15428 (5)
CHEBI:16335 (5)
CHEBI:17750 (5)
CHEBI:16704 (5)
CHEBI:16857 (5)
CHEBI:32816 (5)
CHEBI:16737 (5)
CHEBI:16919 (5)
CHEBI:48430 (4)
CHEBI:17256 (4)
CHEBI:16680 (4)
CHEBI:16040 (4)
CHEBI:17562 (4)
CHEBI:16750 (4)
CHEBI:17748 (4)
CHEBI:15741 (4)
CHEBI:17154 (4)
CHEBI:15891 (4)
CHEBI:16347 (4)
CHEBI:16414 (4)
CHEBI:15354 (4)
CHEBI:30769 (4)
CHEBI:134598 (3)
CHEBI:40410 (3)
CHEBI:17992 (3)
CHEBI:17033 (3)
CHEBI:15584 (3)
CHEBI:17172 (3)
CHEBI:16450 (3)

Metabolite Name

Uridine (11)
Taurine (10)
Deoxyguanosine (10)
Azelaic acid (10)
Adenine (10)
Inosine (10)
Hypoxanthine (10)
Uracil (9)
Glutathione (9)
Uric acid (9)
Cytidine (9)
Guanosine (9)
Deoxycytidine (9)
Thymidine (9)
Betaine (8)
Daidzein (8)
Choline (8)
Citric acid (8)
Glutaric acid (8)
Dodecanedioic acid (8)
Deoxyinosine (8)
Xanthine (8)
Ornithine (7)
Deoxycholic acid (7)
Oxypurinol (7)
Adenosine (7)
Guanine (7)
Suberic acid (7)
Salicylic acid (7)
Riboflavin (7)

First Public Date

2014 (274)
2025 (232)
2024 (232)
2023 (213)
2026 (195)
2018 (185)
2020 (174)
2021 (167)
2022 (159)
2019 (149)
2017 (132)
2016 (77)
2015 (63)
2013 (60)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Germany (4)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (3)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (3)
Cancer Research UK Cambridge Institute, University of Cambridge (3)
University of Edinburgh (3)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (2)
Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK Interdisciplinary Centre for Ancient Life, Department of Earth and Environmental Sciences, University of Manchester, Oxford Road 131, Manchester, M13 9PL, UK (2)
Laboratoire de Spectrométrie de Masse BioOrganique, IPHC, Université de Strasbourg, CNRS, UMR7178, Strasbourg, France (2)
Natural History Museum of Denmark University of Copenhagen, Øster Voldgade 5–7, 1350 Copenhagen, Denmark (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
Oregon Hearing Research Center Oregon Health & Science University Portland, OR, USA (2)
University of Hohenheim, Institute of Animal Science, Stuttgart, Germany (2)
Oregon Hearing Research Center Oregon Health & Science University Portland OR 97239 (2)
ETH Zurich, Institute of Molecular Systems Biology, Zurich, Switzerland (2)
China Agricultural University (2)
Wageningen University (2)
Agroscope Schwarzenburgstrasse 161 3003 Bern Switzerland (2)
North Carolina State University (2)
INRA Centre val de Loire 5tours, France) UMR INRA 85 CNRS 7247 UFR IFCE Physiologie de la reproduction et des comportements PAIB2 platform (1)
INRAE Val de Loire France (1)
Biological and Environmental Proteomics, Institute of Biomedical Research of Barcelona, Spanish National Research Council (IIBB-CSIC/IDIBAPS), Rosellón 161, E-08036 Barcelona, Spain. (1)
PCF, Biozentrum, University of Basel, Swizerland (1)
China Agricultural University, 100193, China (1)
National Engineering Laboratory for Animal Breeding, Beijing Key Laboratory for Animal Genetic Improvement, College of Animal Science and Technology, China Agricultural University, Beijing, China (1)
University of Edinburgh, Wellcome Trust Centre for Cell Biology (1)
Globe Institute, Faculty of Health and Medical Science, University of Copenhagen, Øster Farimagsgade 5, 1353, Copenhagen, Denmark (1)
The Hong Kong Polytechnic univerisity (1)
College of Animal Science and Technology, Henan Agricultural University, China (1)
Oregon Hearing Research Center (1)
Biology Department, Syracuse University, USA (1)

IsPrivate

False (1)

Submitter Keywords

Not Peer Reviewed (1)

Classification

bacteria (5)

Modification

Not available (2)
N6 (1)
57.02146 (1)
15.99491 (1)

Study type

Transcription profiling by array (404)
RNA-seq of coding RNA (113)
ChIP-seq (29)
RNA-seq of non coding RNA (21)
Comparative genomic hybridization by array (18)
RNA-seq of coding RNA from single cells (14)
Unknown experiment type (9)
ChIP-chip by array (7)
Other (7)
Methylation profiling by high throughput sequencing (7)
Animal - Single-cell sequencing (5)
Animal - High-throughput sequencing (4)
ATAC-seq (4)
DNA-seq (4)
Transcription profiling by SAGE (3)
MicroRNA profiling by high throughput sequencing (3)
Methylation profiling by array (3)
Proteomic profiling by array (3)
RNA-seq of total RNA (2)
Methyl-seq (1)
Transcription profiling by MPSS (1)
MeDIP-seq (1)
Animal - One-color microarray (1)
One-color microarray (1)
High-throughput sequencing (1)
Genotyping by array (1)
Bisulfite-seq (1)
Ribo-seq (1)
ScATAC-seq (1)
Single nucleus RNA sequencing (1)

Release Date

2022 (110)
2015 (108)
2010 (105)
2021 (102)
2020 (93)
2014 (91)
2012 (91)
2023 (90)
2011 (86)
2013 (82)
2025 (77)
2016 (76)
2018 (68)
2024 (66)
2017 (63)
2019 (55)
2009 (52)
2008 (48)
2026 (18)
2007 (17)
2006 (13)
2005 (7)
2004 (3)
2001 (3)
2000 (1)

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Gallus gallus gallus

Gallus gallus gallus skin appendage transcriptome

PRJNA285133 | ENA

Gallus gallus gallus

Gallus gallus gallus Genome sequencing and assembly

PRJNA477905 | ENA

Detection of genome-wide copy number variations in two chicken lines divergently selected for abdominal fat content

Background: The chicken (Gallus gallus) is an important model organism that bridges the evolutionary gap between mammals and other vertebrates. Copy number variations (CNVs) are a form of genomic structural variation widely distributed in the genome. CNV analysis has recently gained greater attentio...

ORGANISM(S): Gallus gallus

2015-05-20 | E-GEOD-58551 | biostudies-arrayexpress

Gallus gallus gallus

Gallus gallus gallus Raw sequence reads

PRJNA1082069 | ENA

Gallus gallus gallus

Gallus gallus gallus Raw sequence reads

PRJNA1230596 | ENA

Expression of known and predicted genes in tissues of Gallus gallus (chicken)

Expression of known and predicted genes in tissues of Gallus gallus (chicken) pooled from multiple healthy individuals. Two-colour experiments with two different tissues hybridized to each array. Each tissue is arrayed in replicate with dye swaps. Tissues: Bursa of Fabricius, Cerebellum, Cerebral co...

ORGANISM(S): Gallus gallus

2010-06-19 | E-GEOD-12974 | biostudies-arrayexpress

Gallus gallus

PRJNA843754 | ENA

RNA-Seq of G. gallus mRNA-seq from cell line macrophages and embryonic fibroblasts

RNA samples from chicken (Gallus gallus) embryonic fibroblasts (sample ID: ES90) as well as from the HD11 chicken macrophage cell line (sample ID: ES91) were sequenced at the National Institutes of Health Intramural Sequencing Center (NISC) using the Illumina GAIIx technology running the standard CA...

ORGANISM(S): Gallus gallus

2013-08-01 | E-MTAB-1479 | biostudies-arrayexpress

Gallus gallus gallus breed:leghorn

Gallus gallus gallus skin appendage transcriptome

PRJNA284860 | ENA

Gallus gallus

Gallus gallus Transcriptome

PRJNA411969 | ENA

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5565 Results

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