Gally David D - OmicsDI

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Transcriptomics (3)
Unknown (1)
Proteomics (1)

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Escherichia coli O157:H7 (1)
Escherichia coli O157:H7 str. Sakai (1)
Escherichia coli (1)
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Mycobacterium tuberculosis SP10 (1)
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Human alphaherpesvirus 1 strain 17 (1)
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Exiguobacterium sp. SH31 (1)
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Human betaherpesvirus 5 (1)
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Repository

biostudies-arrayexpress (3)
pride (1)

Tissue

Cell culture (1)

Technology Type

Data-dependent acquisition (1)
Bottom-up proteomics (1)
Mass Spectrometry (1)

Publication Date

2014 (2)
2009 (1)
2026 (1)

Study type

Transcription profiling by array (2)
RNA-seq of coding RNA (1)

Release Date

2014 (2)
2009 (1)
2018 (1)

Lab affiliation

University of Edinburgh (1)

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Transcriptional response of Escherichia coli O157 TUV93-0 to small molecule inhibitors of TTS

The transcriptional profile of Escherichia coli O157 treated with small molecule inhibitors of type III secretion was determined. Four variations of the small molecule inhibitor were assessed for global changes in transcription by treating cells with 20uM of inhibitor or an equivalent volume of DMSO...

ORGANISM(S): Escherichia coli

2009-08-10 | E-GEOD-10319 | biostudies-arrayexpress

An RNA-dependent mechanism for transient expression of bacterial translocation filaments.

Not available

S-EPMC5909449 | biostudies-literature

UV-crosslinking and high throughput sequencing of cDNAs (CRAC) of the RNA chaperone Hfq in enterohaemorhaggic E. coli

UV-crosslinking and high througput sequencing of cDNAs (CRAC) was used to map the binding sites Hfq in enterohaemorhaggic E. coli (EHEC). Hfq was tagged with a His-FLAG dual affintiy tag and UV crosslinked after growth in the MEM-HEPES media essentailly as per Granneman et al (2009) PNAS. We additio...

ORGANISM(S): Escherichia coli O157:H7 str. Sakai

2014-05-22 | E-GEOD-46118 | biostudies-arrayexpress

Transcriptional profile of pulsed AsxR in Escherichia coli O157:H7 str. TUV93-0

Transcript abundance in Escherichia coli O157:H7 was determined in the presence or absence of pulsed expression of the small RNA, AsxR. AsxR was cloned under the control the arabinose inducible promoter Para. Escherichia coli O157:H7 str. TUV93-0 with pAsxR or empty vector was cultured in MEM-HEPES ...

ORGANISM(S): Escherichia coli O157:H7

2014-05-22 | E-GEOD-46113 | biostudies-arrayexpress

The type 6 secretion system immunity protein RhsFI has been repurposed for small RNA regulation in pathogenic E. coli

RNA-binding proteins (RBPs) play key roles in regulating virulence gene expression in pathogenic, enterohaemorrhagic E. coli (EHEC). Under virulence-inducing conditions total RNA associated protein purification (TRAPP) identified 443 RNA-associated proteins in EHEC included 35 encoded within pathoge...