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TranscriptomicsvGPCR and lytic KSHV time course in TIME cells
TIME cells either expressing KSHV-RTA or KSHV-vGPCR alone, or TIME cells infected with KSHV and lytically reactivated with RTA for 6, 12, or 20 hours. Keywords = KSHV Keywords = host shutoff Keywords = vGPCR
ORGANISM(S): Homo sapiens 
2010-06-09 | E-GEOD-1406 | biostudies-arrayexpress
TranscriptomicsMock or latently infected KSHV cells (BCBL, SLK and HFF)
[original title] Mock or latently infected KSHV cells (BCBL, SLK and HFF) vs common reference (mixture of RNA from both infected and uninfected cells). Expression profiling of latently infected cells using a custom tiling microarray. SLK and HFF cells were infected and selected for rKSHV.219. Mock ...
ORGANISM(S): Homo sapiens 
2010-06-05 | E-GEOD-20443 | biostudies-arrayexpress
TranscriptomicsmiR-K5 expression and inhibition
Transcriptional profiling of BJAB cells expressing miR-K5 and BCBL cells treated with miR-K5 inhibitor. To identify host RNA targets of KSHV miRNAs, we took advantage of the observation that RNAs targeted by miRNAs often display small reductions in their steady-state levels, perhaps as a result of t...
ORGANISM(S): Homo sapiens 
2010-05-19 | E-GEOD-12967 | biostudies-arrayexpress
TranscriptomicsMock or KSHV cells (BJABJ, BCBL, TIME and HUVEC) vs common reference (mixture of RNA from both infected and uninfected cells)
Expression profiling of latently infected cells using a custom tiling microarray HUVEC and TIME cells were infected BCBL-1-derived KSHV. Mock infected HUVEC and TIME cells served as controls for each of these two stably infected cells, respectively. BJAB cells served as uninfected controls for the B...
ORGANISM(S): Homo sapiens 
2010-07-07 | E-GEOD-21972 | biostudies-arrayexpress
TranscriptomicsHuman respiratory and stool specimens used to detect cardioviruses
Cardioviruses are a genus of picornaviruses that cause severe illnesses in rodents, but little is known about the prevalence, diversity, or spectrum of disease of such agents among humans. We report the identification of a group of human cardioviruses that have been detected and cloned directly fro...
ORGANISM(S): Viruses 
2008-09-17 | E-GEOD-11569 | biostudies-arrayexpress
TranscriptomicsIdentification of Xenotropic MuLV-related virus
This series includes 20 microarrays used to identify Xenotropic MuLV-related virus (XMRV) in a set of human prostate tumors associated with R462Q RNASEL variant (Urisman, et al. 2006). The series includes 19 prostate tumor samples (VP) and a cell line control (HeLa).
ORGANISM(S): Viruses 
2010-07-01 | E-GEOD-3607 | biostudies-arrayexpress
TranscriptomicsmiR-K10a expression and inhibition
Transcriptional profiling of BJAB cells expressing miR-K10a and BCBL cells treated with miR-K10a inhibitor. To identify host RNA targets of KSHV miRNAs, we took advantage of the observation that RNAs targeted by miRNAs often display small reductions in their steady-state levels, perhaps as a result ...
ORGANISM(S): Homo sapiens 
2010-11-10 | E-GEOD-24069 | biostudies-arrayexpress
TranscriptomicsmiR-K12-9 expression and inhibition
Transcriptional profiling of BJAB cells expressing miR-K12-9 and BCBL cells treated with miR-K12-9 inhibitor. To identify host RNA targets of KSHV miRNAs, we took advantage of the observation that RNAs targeted by miRNAs often display small reductions in their steady-state levels, perhaps as a resul...
ORGANISM(S): Homo sapiens 
2012-11-01 | E-GEOD-40093 | biostudies-arrayexpress
TranscriptomicsmiR-K12-6-5p expression changes of human transcripts
Transcriptional profiling of BJAB cells expressing miR-K12-6-5p. To identify host RNA targets of KSHV miRNAs, we took advantage of the observation that RNAs targeted by miRNAs often display small reductions in their steady-state levels, perhaps as a result of their impaired translation. Accordingly,...
ORGANISM(S): Homo sapiens 
2015-02-11 | E-GEOD-65148 | biostudies-arrayexpress
TranscriptomicsViral Detection Microarray Analysis of Unknown Tropical Febrile Illness Cases
This study aimed to use pan-viral detection microarrays to identify viruses in serum from cases of acute pediatric febrile illness in a tropical setting. Patient clinical data and serum samples were collected between 2005 and 2009 as part of an ongoing pediatric dengue virus study at the Hospital In...
ORGANISM(S): Viruses 
2011-12-31 | E-GEOD-28142 | biostudies-arrayexpress
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