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TranscriptomicsComparison of 2 aspen genotypes having similar carbon assimilation rates but different allocation patterns under elevated CO2
• Reference to published study making use of this data: • Cseke LJ, Tsai C-J, Rogers A, Nelsen MP, White HL, Karnosky DF, Podila GK. (2009) Transcriptomic comparison in the leaves of two aspen genotypes having similar carbon assimilation rates but different allocation patterns under elevated CO2. N...
ORGANISM(S): Populus tremuloides 
2009-03-31 | E-GEOD-14881 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis plants with the chlorophyll removed by combining enhancer trap and RNAi approaches
Chlorophyll was removed from the veins of the C3 plant Arabidopsis by combining enhancer trap and RNAi approaches. Three independent transgenic lines were created. These were each compared to the parent line, J1511, in a microarray experiment.
ORGANISM(S): Arabidopsis thaliana 
2009-12-01 | E-MEXP-1988 | biostudies-arrayexpress
TranscriptomicsR.palustris: cbbT1 overexpression and cbbT2 overexpression
Transcriptional profiling of Rhodopseudomonas palustris (R. palustris) comparing cbbT1 over-expressing strain with cbbT2 over-expressing strain. Goal was to discriminate the molecular mechanisms between transketolase I (cbbT1) and transketolase II (cbbT2). R.palustris is a purple non-sulfur anoxygen...
ORGANISM(S): Rhodopseudomonas palustris 
2014-05-06 | E-GEOD-29310 | biostudies-arrayexpress
ProteomicsComparative Proteomics of Bark and Xylem Provides Insights into Age-Dependent Corticular Photosynthesis in Eucalyptus grandis
Eucalyptus species are vital for the global forestry industry, known for their rapid growth, adaptability, and high biomass production. Beyond their economic importance, eucalyptus plantations contribute to carbon sequestration, playing a crucial role in climate change mitigation by capturing atmosp...
ORGANISM(S): Eucalyptus grandis 
2026-02-23 | PXD067762 | Pride
Carbon metabolism Proteomics Corticular photosynthesis Eucalyptus Fermentation Glycolysis 
TranscriptomicsTranscriptome in Arabidopsis yellow variegated 2 (var2)
The yellow variegated2 (var2) mutant in Arabidopsis thaliana has been studied as a typical leaf-variegated mutant whose defect results from the lack of FtsH2 metalloprotease in chloroplasts. The var2 green sectors suffer from photooxidative stress and accumulate high levels of reactive oxygen specie...
ORGANISM(S): Arabidopsis thaliana 
2010-06-05 | E-GEOD-18646 | biostudies-arrayexpress
TranscriptomicsIn vivo recruitment analysis and a mutant strain without any group 2 σ factors reveal roles of different σ factors in cyanobacteria
In eubacteria, replacement of one σ factor in the RNA polymerase (RNAP) holoenzyme by another one changes the transcription pattern. Cyanobacteria are eubacteria characterized by oxygenic photosynthesis and they typically encode numerous group 2 σ factors that closely resemble the essential primary ...
ORGANISM(S): Synechocystis sp. PCC 6803 
2015-09-15 | E-GEOD-69981 | biostudies-arrayexpress
ProteomicsAlkali-salinity NaHCO3-responsive mechanisms in leaves from halophyte Puccinellia tenuiflora revealed from physiological and comparative proteomic analysis
Alkali-salinity is a major abiotic stress that limits plant growth and productivity. Studying mechanisms of alkali-salinity tolerance in halophytic plants will provide valuable information for underlying plant alkali-salinity tolerance. Puccinellia tenuiflora is considered as an ideal model plant fo...
ORGANISM(S): Puccinellia tenuiflora 
2022-02-23 | PXD002351 | Pride
Proteomics Puccinellia tenuiflora Nahco3 
TranscriptomicsExpression data from Arabidopsis wild-type, sicy-192, and sicy-192 gun1-101 plants
Plastid gene expression (PGE) acts as a signal that regulates the expression of photosynthesis-associated nuclear genes (PhANGs) via GENOMES UNCOUPLED1 (GUN1)-dependent retrograde signaling. We recently isolated Arabidopsis sugar-inducible cotyledon yellow-192 (sicy-192), a gain-of-function mutant o...
ORGANISM(S): Arabidopsis thaliana 
2013-09-14 | E-GEOD-50857 | biostudies-arrayexpress
TranscriptomicsPervasive effects of an endophytic fungus on host genetic and phenotypic expression in a tropical tree (part 3)
Inoculation of endophyte-free (E-) Theobroma cacao leaves with Colletotrichum tropicale (E+), the dominant foliar fungal endophyte in healthy T. cacao, induced significant changes in the expression of hundreds of host genes. Further, E+ leaves exhibit enhanced pathogen resistance, increased lignin a...
ORGANISM(S): Theobroma cacao 
2014-08-12 | E-GEOD-60357 | biostudies-arrayexpress
TranscriptomicsPervasive effects of an endophytic fungus on host genetic and phenotypic expression in a tropical tree (part 2)
Inoculation of endophyte-free (E-) Theobroma cacao leaves with Colletotrichum tropicale (E+), the dominant foliar fungal endophyte in healthy T. cacao, induced significant changes in the expression of hundreds of host genes. Further, E+ leaves exhibit enhanced pathogen resistance, increased lignin a...
ORGANISM(S): Theobroma cacao 
2014-06-30 | E-GEOD-54731 | biostudies-arrayexpress
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