Gene-environment interaction

Show results for

Unknown (2827)
Transcriptomics (594)
Genomics (375)
Proteomics (62)
Metabolomics (25)
Other (14)
Methylation profiling (10)
Genomic (7)
Models (4)
Clinical (1)
Multiomics (1)

Organisms

Homo sapiens (183)
Mus musculus (139)
Arabidopsis thaliana (32)
Saccharomyces cerevisiae (26)
Candida albicans (16)
Escherichia coli (11)
Rattus norvegicus (11)
Methanococcus maripaludis S2 (10)
Drosophila melanogaster (8)
Bos taurus (8)
Sus scrofa (8)
Schizosaccharomyces pombe (6)
Vitis vinifera (6)
Danio rerio (5)
Strongylocentrotus purpuratus (5)
Oryza sativa (5)
Oncorhynchus nerka (4)
Mycobacterium avium subsp. paratuberculosis (4)
Aspergillus fumigatus (4)
Fundulus heteroclitus (4)
Caulobacter vibrioides (3)
Apis mellifera (3)
Vibrio cholerae (3)
Gallus gallus (3)
Listeria monocytogenes EGD-e (3)
Anemonia viridis (2)
marine metagenome (2)
Pimephales promelas (2)
Aspergillus niger (2)
Bacillus anthracis (2)

Organisms

Homo sapiens (68)
Mus musculus (59)
Saccharomyces cerevisiae (8)
Rattus norvegicus (7)
Arabidopsis thaliana (6)
Escherichia coli str. K-12 substr. MG1655 (5)
Sus scrofa (5)
Candida albicans (4)
Escherichia coli (4)
Bos taurus (3)
Vitis vinifera (3)
Drosophila melanogaster (3)
Cryptococcus neoformans H99 (2)
Strongylocentrotus purpuratus (2)
Magallana gigas (2)
Salmo salar (2)
Oryza sativa (2)
Caenorhabditis elegans (2)
Mycobacterium avium subsp. hominissuis (1)
Enterobacter sp. SA187 (1)
Aspergillus cristatus (1)
Listeria monocytogenes EGD-e (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Streptococcus pyogenes (1)
Burkholderia contaminans (1)
Porphyromonas gingivalis (1)
Aspergillus fumigatus (1)
Pseudomonas aeruginosa (1)
Campylobacter jejuni (1)
Lithobates sylvaticus (1)

Repository

biostudies-arrayexpress (456)
ENA (325)
geo (192)
pride (44)
MetaboLights (25)
EGA (18)
MassIVE (8)
dbGaP (7)
iProX (5)
BioModels (4)
GPMDB (2)
jPOST (2)
PAXDB (2)
PanoramaPublic (1)

Tissue

Cell culture (9)
Brain (6)
Blood plasma (2)
Embryo (2)
Epithelial cell (2)
Fibroblast (2)
Heart (2)
Kidney (2)
Liver (2)
Melanocyte (2)
Skin mucus (2)
B cell (1)
Embryonic stem cell (1)
Endometrium epithelium (1)
Foreskin fibroblast (1)
Leaf (1)
Lung (1)
Neuron (1)
Peritoneal exudate (1)
Peritoneal fluid (1)
Plant cell (1)
Primary cell line cell (1)
Seminal vesicle (1)
Skeletal muscle (1)
Stem cell (1)
T cell (1)
T-lymphocyte (1)
Uterine endometrial epithelium (1)
Uterine endometrium (1)
Uterine epithelium (1)

Disease

Normal (2)
Not Available (2)
Pre-tumoral lesion in a mouse model of human adamantinomatous craniopharyngioma (ACP) (1)
Colorectal cancer recurrence-free (1)
Small cell lung cancer (1)
Temporal lobe epilepsy (1)
Megakaryoblastic leukemia (1)
Colorectal Neoplasms (1)
Amyotrophic lateral sclerosis (1)
Cardiovascular system disease (1)
Disease free (1)
Glioblastoma (1)
Human immunodeficiency virus infectious disease (1)
Leishmaniasis (1)
Malaria (1)
Melanoma (1)
Skin melanoma (1)
Systemic lupus erythematosus (1)
Upper respiratory tract disease (1)

Technology Type

Mass Spectrometry (44)
Shotgun proteomics (23)
Mass spectrometry (18)
Bottom-up proteomics (8)
Mass spectrometry assay (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (5)
SWATH MS (4)
Data-independent acquisition (3)
Gel-based experiment (3)
MSE (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (11)
NextSeq 500 (5)
Illumina Genome Analyzer IIx (2)
Axon GenePix 4000B scanning hardware (2)
NextSeq 2000 (2)
NextSeq 550 (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Hamamatsu Nanozoomer S60 (1)
Nanodrop 2000c spectrophotometer (1)
R software (1)
Nf-core pipeline (1)
Illumina DNA Tagmentation (1)
Arcturus PicoPure (1)
Miltenyi Biotec (cat no. 130-096-730) ,Fortessa X-20 flow cytometer (BD Biosciences) (1)
IScan (Illumina) (1)
Agilent Technologies G2565CA microarray scanner (1)
Affymetrix GeneChip Scanner 3000 7G (1)
ScanArray [PerkinElmer] (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
GenePix Personal 4100A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
Vortex (1)
Ion Torrent Proton (1)
Illumina (1)
MinION (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 3000 (1)

Publication Date

2012 (78)
2010 (78)
2011 (72)
2014 (68)
2013 (63)
2026 (42)
2024 (39)
2015 (39)
2025 (29)
2008 (29)
2020 (28)
2016 (26)
2022 (20)
2023 (18)
2017 (17)
2007 (17)
2021 (15)
2018 (14)
2009 (13)
2019 (12)
2005 (10)
2006 (8)

UNIPROT ID/AC

1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABB_HUMAN (1)
2ABD_HUMAN (1)
3HIDH_HUMAN (1)
3MGA_BACSU (1)
4OT_BACSU (1)
53DR_BACSU (1)
5NTC_HUMAN (1)
6PGDH_BACSU (1)
6PGD_BACSU (1)
6PGD_HUMAN (1)
6PGL_BACSU (1)
6PGL_HUMAN (1)
9606.ENSP00000291295 (1)
9606.ENSP00000322421 (1)
9606.ENSP00000347168 (1)
9606.ENSP00000348924 (1)
9606.ENSP00000349467 (1)
9606.ENSP00000352119 (1)
9606.ENSP00000352627 (1)
9606.ENSP00000355778 (1)

CHEBI ID

CHEBI:16708 (4)
CHEBI:15603 (4)
CHEBI:17895 (4)
CHEBI:48430 (3)
CHEBI:17154 (3)
CHEBI:6650 (3)
CHEBI:15760 (3)
CHEBI:32816 (3)
CHEBI:30915 (3)
CHEBI:28875 (3)
CHEBI:16414 (3)
CHEBI:17191 (3)
CHEBI:15756 (3)
CHEBI:30769 (3)
CHEBI:32321 (2)
CHEBI:16016 (2)
CHEBI:76341 (2)
CHEBI:16521 (2)
CHEBI:16440 (2)
CHEBI:17140 (2)
CHEBI:17924 (2)
CHEBI:16002 (2)
CHEBI:16927 (2)
CHEBI:17768 (2)
CHEBI:15908 (2)
CHEBI:17561 (2)
CHEBI:35932 (2)
CHEBI:15999 (2)
CHEBI:16857 (2)
CHEBI:17754 (2)

Metabolite Name

Serine (7)
Homoserine (6)
Phe-Val (6)
Uridine (6)
Aminocyclopyrachlor (5)
Leucine (5)
Norleucine (5)
5-Aminopentanoic acid (5)
4-Hydroxyproline (5)
2-Aminobutyric acid (5)
Alanine (5)
Citrulline (5)
Citric acid (5)
13-Ethenyl-5,7,9,11,13-pentamethyl-2-oxa-18-azahexacyclo[20.2.2.13,10.04,9.016,20.014,27]heptacosa-1(24),11,22,25-tetraene-15,17,19-trione (5)
Fusidic Acid (5)
(2S)-3-methyl-2-[[(2R)-5-oxopyrrolidine-2-carbonyl]amino]butanoic acid (5)
Arginine (5)
Oxypurinol (5)
Malic acid (5)
Pipecolic acid (5)
9-Oxo-10(E),12(E)-octadecadienoic acid (5)
Adenosine (5)
Glutamine (5)
Pyruvate (5)
Glyceric acid (5)
Uracil (5)
Dodecanoic acid (5)
Thymidine (5)
Tryptophan (5)
13,14-Dihydro-16,16-difluoroprostaglandin J2 (4)

First Public Date

2014 (68)
2024 (37)
2026 (32)
2020 (28)
2025 (27)
2023 (25)
2021 (23)
2019 (20)
2022 (18)
2017 (15)
2016 (11)
2013 (10)
2018 (6)
2015 (5)

Modelling Approach

Ordinary differential equation model (4)

Study status

Completed (1)

Lab affiliation

Department of Biochemistry, Charité Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany Berlin Institute of Health (BIH) at Charité Universitätsmedizin Berlin, Berlin, Germany The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Roosevelt Dr, Headington, Oxford OX3 7BN, UK (2)
Neurologische Klinik und Poliklinik des Universitätsklinikums Neurology Josef-Schneider-Straße 11 97080 Würzburg Germany (2)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Bowling Green State University (1)
Center for Evolutionary and Theoretical Immunology (CETI), Department of Biology, University of New Mexico, Albuquerque, NM, USA (1)
Center for Evolutionary and Theoretical Immunology (CETI), Department of Biology, University of New Mexico, Albuquerque, NM, USA. (1)
Chair in Infection and Global Health, Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, ic2 Building, Liverpool, L3 5RF, UK. (1)
Department of Biology, Plant ecophysiology lab, ADepartment of Biological Sciences, University of Cape Town, Private Bag X3, Rondebosch 7701, South Africa (1)
Department of Cellular Biology and Immunology, Lab 201, Instituto de Parasitología y Biomedicina López-Neyra (IPBLN), Consejo Superior de Investigaciones Científicas (CSIC), Spain. (1)
Department of Genetics, Stanford University (1)
Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel (1)
Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, Liverpool, UK. (1)
Department of Medical Biology, Medical University of Bialystok, Bialystok, Poland (1)
Department of Medicine and Animal Surgery, Faculty of Veterinary Science, University of Murcia, Spain (1)
Department of Medicine and Animal Surgery, International Excellence Campus for Higher Education and Research “Campus Mare Nostrum”, University of Murcia, Murcia, Spain Institute for Biomedical Research of Murcia (IMIB-Pascual Parrilla), Murcia, Spain (1)
Department of Molecular Biology, Cristea Lab, Princeton University, USA (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany (1)
Dept of Pathology, Microbiology and Immunology Vanderbilt University School of Medicine (1)
Division of Chemistry I, Department of Medical Biochemistry & Biphysics, Karolinska Institutet, Stockholm, Sweden (1)
Erciyes University Genome and Stem Cell Center (GENKOK) (1)
Functional Proteomics Laboratory Department of Science and Technology Federal University of São Paulo (ICT-UNIFESP) São José dos Campos, São Paulo, Brazil Rua Talim, 330, 12231-280; Tel +55 11 3385-4135 ext. 9727. (1)
Hans Merensky Chair in Avocado Research, Department of Biochemistry, Genetics and Microbiology, Faculty of Natural and Agricultural Sciences, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0028, South Africa (1)
Heidelberg University, Center for Organismal Studies (COS) Heidelberg, Department of Developmental Biology, Heidelberg, Germany (1)
ISSCOR / UCSD (1)
Indiana University School of Medicine, USA (1)
Institut Jacques Monod, UMR7592 CNRS-Université Paris Diderot, Sorbonne Paris Cité, F-75205 Paris, France (1)
Iowa State University (1)
Key Laboratory of Medical Electrophysiology of the Ministry of Education Medical Electrophysiological Key Laboratory of Sichuan Province Institute of Cardiovascular Research, Southwest Medical University (1)
Key Laboratory of Rare and Uncommon Diseases, Department of Microbiology, Institute of Basic Medicine, Shandong First Medical University & Shandong Academy of Medical Sciences (1)
Laboratory of Protein Chemistry - Proteomic Unit Department of Biochemistry, Institute of Chemistry,UFRJ Av. Athos da Silveira Ramos, 149, CT, Bl. A, 543, Cidade Universitária, 21941-909, Rio de Janeiro, RJ, Brazil Laboratory of Proteomics (LabProt) - LADETEC, Institute of Chemistry Av. Horácio Macedo, 1281, Polo de Química, Bl. C, Lab. 324, Cidade Universitária,21941-598, Rio de Janeiro, RJ, Brazil (1)

Keyword

Cholecalciferol (1)
Vitamin D (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (1)

Classification

bacteria (18)
fungi (8)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4 (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (304)
RNA-seq of coding RNA (53)
Methylation profiling by array (18)
Unknown experiment type (16)
Transcription profiling by tiling array (14)
ChIP-seq (11)
Comparative genomic hybridization by array (8)
Other (7)
RNA-seq of non coding RNA (4)
Transcription profiling by SAGE (3)
ChIP-chip by tiling array (3)
Cell line - High-throughput sequencing (3)
RNA-seq of coding RNA from single cells (3)
ChIP-chip by array (2)
MicroRNA profiling by array (2)
Animal - One-color microarray (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
RNA-seq of total RNA (1)
Interventional (1)

Release Date

2022 (286)
2023 (239)
2021 (237)
2020 (213)
2014 (198)
2025 (189)
2018 (184)
2019 (183)
2015 (180)
2017 (173)
2012 (170)
2016 (168)
2024 (163)
2013 (159)
2011 (151)
2010 (133)
2008 (69)
2009 (54)
2007 (42)
2026 (31)
2006 (28)
2005 (14)
2003 (6)
2002 (3)
2001 (3)
2000 (2)
1999 (2)
2004 (1)
1998 (1)
1997 (1)

Location

United Kingdom (1)

Previous page
1 / 392
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 392
Next page

Sort by:

Relevance

Page size

Gene-environment interaction in yeast gene expression

This study is a quantitative trait linkage mapping study targeted at gene-environment interaction. A family of yeast derived from BY4716 and RM11-1a was grown in two carbon sources (glucose and ethanol) and expression profiled. The analysis revealed how the influence of genetic factors changes in di...

ORGANISM(S): Saccharomyces cerevisiae

2008-04-15 | E-GEOD-9376 | biostudies-arrayexpress

Single-cell RNA sequencing dissects gene-environment interactions on gene expression and regulation in immune cells.

This study aims to dissect gene-environment interactions on gene expression and regulation in immune cells using scRNA-seq data from 120 donors being stimulated with 3 pathogens, for 2 different timepoints. More specifically, we identified context- and cell-type-specific eQTLs and co-expression QTLs...

EGAS00001005376 | EGA

Gene-environment dependence creates spurious gene-environment interaction.

Not available

S-EPMC4157149 | biostudies-literature

Gene-environment interaction between Notch1 and oxidative stress disrupts cardiac developmental pathways

PRJNA1171854 | ENA

Gene-environment interaction in yeast gene expression

ORGANISM(S): Saccharomyces cerevisiae

2008-04-15 | GSE9376 | GEO

Reverse gene-environment interaction approach to identify variants influencing body mass index in humans

PRJNA531837 | ENA

Gene-environment interaction and obesity.