Genomic structural variants

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Unknown (2281)
Genomics (510)
Transcriptomics (196)
Genomic (28)
Other (16)
Proteomics (13)
Methylation profiling (7)
Metabolomics (2)

Organisms

Homo sapiens (277)
Mus musculus (40)
Arabidopsis thaliana (10)
Saccharomyces cerevisiae (8)
Gallus gallus (6)
Caenorhabditis elegans (5)
Macaca mulatta (4)
Glycine max (3)
Canis lupus familiaris (3)
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Drosophila melanogaster (3)
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Heliconius melpomene (2)
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Pongo abelii (2)
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Ralstonia pickettii (1)
Brugia malayi (1)
Cucumis melo (1)
Dickeya dadantii 3937 (1)
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Plasmodium falciparum 3D7 (1)
Vitis vinifera (1)
Aedes aegypti (1)
Plasmodium falciparum (1)
Anas platyrhynchos (1)
Plasmodium falciparum 7G8 (1)
Sus scrofa (1)
Oncorhynchus mykiss (1)

Organisms

Homo sapiens (125)
Mus musculus (18)
Pantherophis guttatus (2)
Arabidopsis thaliana (2)
Puccinia graminis f. sp. tritici (1)
Hemitriccus margaritaceiventer (1)
Cardamine amara subsp. amara (1)
Bos (1)
Persea americana (1)
Tupaia belangeri chinensis (1)
Hordeum vulgare (1)
Macaca (1)
Bos javanicus (1)
Ovis vignei (1)
Candidozyma auris (1)
Oryza sativa Indica Group (1)
Oncorhynchus mykiss (1)
Caenorhabditis elegans (1)
Bubalus bubalis (1)
Ovis aries (1)
Homo (1)
Zea mays (1)
Zea mays subsp. mays (1)
Vitis vinifera (1)
Saccharomyces cerevisiae (1)
Gallus gallus (1)
unidentified (1)

Repository

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biostudies-arrayexpress (203)
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geo (76)
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pride (10)
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PAXDB (1)

Tissue

Breast (2)
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Leaf (2)
Fibroblast (2)
Chromosome (1)
Mammary gland epithelial cell (1)
Mammary epithelial cell (1)
Leukocyte (1)
Root (1)
Primary cell (1)
Saliva (1)
Colon (1)
Cell culture (1)

Disease

Primary medulloblastoma (1)
Mitochondrial disease (1)
Multiple congenital malformation (1)
Not Available (1)
Breast Carcinoma (1)
Bartonellosis (1)
Developmental and epileptic encephalopathy 9 (1)
Breast cancer (1)
Colon cancer (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (10)
Shotgun proteomics (8)
Illumina HiSeq 2000 (5)
ILLUMINA, Illumina HiSeq 2000 (2)
Mass spectrometry (2)
OXFORD_NANOPORE, MinION (1)
Illumina HiSeq 2500, ILLUMINA, NextSeq 500 (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
Illumina HumanHap 550K, Illumina HumanHap300-Duo (1)
Illumina HiSeq 2500 (1)
Complete Genomics, unspecified (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina MiSeq (1)
Immunopeptidomics (1)
SWATH MS (1)
Gel-based experiment (1)
Data-dependent acquisition (1)

Instrument Platform

Illumina HiSeq 2500 (9)
Illumina HiSeq 2000 (7)
Illumina NovaSeq 6000 (7)
NextSeq 500 (4)
Illumina Genome Analyzer IIx (3)
MinION (3)
Illumina MiSeq (3)
Illumina HiSeq 4000 (3)
Illumina HiSeq (2)
Illumina Genome Analyzer II (2)
Q Exactive (2)
QExactive (2)
Sony MA-900 cell sorter (1)
Sequel II (1)
Agilent DNA Microarray Scanner (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
HiSeq X Ten (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq X Ten (1)
Instrument (1)

Publication Date

2010 (32)
2014 (25)
2011 (24)
2013 (23)
2015 (22)
2012 (22)
2025 (19)
2024 (17)
2016 (16)
2021 (15)
2022 (13)
2026 (11)
2019 (11)
2008 (10)
2009 (8)
2023 (7)
2017 (7)
2018 (6)
2007 (4)
2020 (3)
2006 (3)
2004 (1)

UNIPROT ID/AC

A0A5F5XHX1_FELCA (1)
M3W9B3_FELCA (1)
M3W1Z4_FELCA (1)
9685.ENSFCAP00000022402 (1)
M3WAY7_FELCA (1)
M3W043_FELCA (1)
A0A337SJG3_FELCA (1)
9685.ENSFCAP00000021550 (1)
M3WLU0_FELCA (1)
9685.ENSFCAP00000011761 (1)
A0A337S9V5_FELCA (1)
A0A5F5Y535_FELCA (1)
A0A2I2UFE0_FELCA (1)
A0A337SAT1_FELCA (1)
A0A337SQG9_FELCA (1)
A0A337RW04_FELCA (1)
A0A2I2U0Y6_FELCA (1)
A0A337SF79_FELCA (1)
M3VWP9_FELCA (1)
M3W262_FELCA (1)
9685.ENSFCAP00000020231 (1)
9685.ENSFCAP00000022411 (1)
M3XE20_FELCA (1)
A0A5F5XD94_FELCA (1)
M3X2X9_FELCA (1)
M3WLD5_FELCA (1)
M3WGK0_FELCA (1)
A8WA76_FELCA (1)
9685.ENSFCAP00000022890 (1)
M3WN59_FELCA (1)

ENSEMBL ID

ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000147251 (2)
ENSG00000170477 (2)
ENSG00000176092 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:10033 (2)
CHEBI:133583 (2)
CHEBI:133565 (2)
CHEBI:9671 (2)
CHEBI:73018 (2)
CHEBI:58128 (2)
CHEBI:166739 (2)
CHEBI:48929 (2)
CHEBI:9307 (2)
CHEBI:133026 (2)
CHEBI:8776 (2)
CHEBI:604731 (2)
CHEBI:133706 (2)
CHEBI:132994 (2)
CHEBI:88765 (2)
CHEBI:8087 (2)
CHEBI:7936 (2)
CHEBI:28315 (2)
CHEBI:133089 (2)
CHEBI:90344 (2)
CHEBI:86910 (2)
CHEBI:133430 (2)
CHEBI:178069 (2)
CHEBI:133532 (2)
CHEBI:61993 (2)
CHEBI:73072 (2)
CHEBI:25013 (2)
CHEBI:133594 (2)
CHEBI:71062 (2)
CHEBI:5778 (2)

Metabolite Name

Verapamil (2)
Vanillic alcohol sulfate (2)
Valerate (2)
Umbelliferone sulfate (2)
Tyramine O-sulfate (2)
Triamterene (2)
Thymol sulfate (2)
Theophylline (2)
Theobromine (2)
Theanine (2)
Taurolithocholate 3-sulfate (2)
Taurocholenate sulfate (2)
Tartarate (2)
Sulfate* (2)
Succinimide (2)
Salicyluric glucuronide* (2)
Saccharin (2)
S-allylcysteine (2)
Ranitidine (2)
Quinine (2)
Pyrraline (2)
Pyroglutamine* (2)
Propyl 4-hydroxybenzoate sulfate (2)
Pregnenolone sulfate (2)
Pregnen-diol disulfate* (2)
Pregnanediol-3-glucuronide (2)
Phenylalanylphenylalanine (2)
Phenylacetylglutamine (2)
Phenylacetate (2)
Paroxetine (2)

First Public Date

2026 (64)
2025 (44)
2024 (35)
2019 (30)
2021 (24)
2023 (21)
2022 (21)
2018 (21)
2020 (20)
2014 (16)
2013 (13)
2016 (11)
2017 (10)
2015 (7)
2012 (4)

Classification

fungi (1)

Study type

Comparative genomic hybridization by array (52)
Transcription profiling by array (40)
RNA-seq of coding RNA (35)
ChIP-seq (17)
DNA-seq (14)
Methylation profiling by array (10)
Other (6)
RNA-seq of non coding RNA (6)
Genotyping by array (5)
Unknown experiment type (4)
ChIP-chip by tiling array (3)
ChIP-chip by array (3)
Cell line - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Tiling path by array (1)
4C (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (332)
2022 (310)
2021 (267)
2023 (258)
2024 (245)
2020 (173)
2019 (146)
2018 (103)
2017 (89)
2016 (81)
2014 (79)
2015 (76)
2011 (56)
2010 (52)
2013 (51)
2012 (51)
2026 (40)
2009 (26)
2008 (24)
2007 (9)
2006 (6)
2005 (4)
1998 (2)
2004 (1)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, China (1)
Department of Protein Biochemistry and Proteomics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, Olomouc, Czech Republic (1)
University of Melbourne, Melbourne, Australia (1)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Robert-Rössle-Straße 10, 13125 Berlin, Germany (1)
Molecular Pharmacology Program, Sloan Kettering Institute, Tow Center for Developmental Oncology, Department of Pediatrics, Memorial Sloan Kettering Cancer Center, and Doctor of Medicine Program, Weill Cornell Medicine (1)
Military Health Institute, Prague, Czech Republic (1)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University,China (1)
Department of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, University at Buffalo (1)
NKI Proteomics Facility, Netherlands Cancer Institute, Amsterdam, The Netherlands (1)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (1)

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Validation of genomic structural variation predictions in fruit flies

Whole-genome tiling arrays were used to validate deletions and tandem duplications that were inferred based on next-generation sequencing data. The arrays were generated for six samples of the Drosophila melanogaster Genetic Reference Panel (DGRP) as well as the Berkeley reference strain. Structural...

ORGANISM(S): Drosophila melanogaster

2012-11-29 | E-MTAB-1105 | biostudies-arrayexpress

U87MG Decoded: The Genomic Sequence of a Cytogenetically Aberrant Human Cancer Cell Line

U87MG is a commonly studied grade IV glioma cell line that has been analyzed in at least 1,700 publications over four decades. In order to comprehensively characterize the genome of this cell line and to serve as a model of broad cancer genome sequencing, we have generated greater than 30x genomic s...

ORGANISM(S): Homo sapiens

2010-01-24 | E-GEOD-19986 | biostudies-arrayexpress

NimbleGen 42M data for the HuRef individual

The ideal genome sequence for medical interpretation is complete and diploid, capturing the full spectrum of genetic variation. Toward this end, there has been progress in discovery of single nucleotide polymorphism (SNP) and small (<10bp) insertion/deletions (indels), but annotation of larger stru...

ORGANISM(S): Homo sapiens

2013-02-12 | E-GEOD-20289 | biostudies-arrayexpress

Fine-Scale Mapping and Sequencing of Structural Variation from Eight Human Genomes

Genetic variation amongst individual humans occurs on many different scales, ranging from gross alterations in the human karyotype to single-nucleotide changes. In this manuscript we explore variation on an intermediate scale-particularly insertions, deletions, and inversions affecting from a few t...

ORGANISM(S): Homo sapiens

2008-05-01 | E-GEOD-10037 | biostudies-arrayexpress

The genome of the grape powdery mildew pathogen

Powdery mildew (Erysiphe necator) is a widespread and economically important disease of grapevines. Large quantities of fungicides are used for its control, accelerating the incidence of fungicide-resistance. A shotgun approach was applied to sequence and assemble the E. necator genome of five isola...

ORGANISM(S): Vitis vinifera

2014-12-10 | E-GEOD-58958 | biostudies-arrayexpress

Structural variants drive context dependent oncogene activation in cancer

PRJNA613064 | ENA

Towards a comprehensive structural variation map of an individual human genome for personalized medicine

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Homo sapiens

2013-02-12 | E-GEOD-20290 | biostudies-arrayexpress

Fine-Scale Mapping and Sequencing of Structural Variation from Eight Human Genomes

ORGANISM(S): Homo sapiens

2008-05-01 | E-GEOD-10008 | biostudies-arrayexpress

Integrative analysis of genomic structural variants in human leukemia