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ProteomicsProteomeTools â?? Part II - Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
"The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the second iteration of the generation and multimodal LC-MS/MS analysis of >220,000 synthetic tryptic peptides representing nearly all c...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2020-07-21 | MSV000085805 | MassIVE
ProteomicsProsit: Proteome-wide prediction of peptide tandem mass spectra by deep learning
In this study, we extended the ProteomeTools peptide library (PROPEL, see PXD004732 and PXD010595) to train a deep neural network resulting in chromatographic retention time and fragment ion intensity predictions for (tryptic) peptides that exceed the quality of the experimental data.
ORGANISM(S): Drosophila Melanogaster (ncbitaxon:7227) Escherichia Coli (ncbitaxon:562) Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) Caenorhabditis Elegans (ncbitaxon:6239) 
2021-03-12 | MSV000087047 | MassIVE
OtherMass-spectrometry-based draft of the human proteome
Data from ProteomeXchange, PXD ID: PXD000865. File: 00645_A01_P004893_B0A_A00_R1.mzml. Published as part of Nature 509, 582-587, 29 May 2014.
ORGANISM(S): Homo_sapiens_viruses, Human 
GPM32310000771 | GPMDB
Resource Reanalysis 
ProteomicsMass spectrometry based draft of the human proteome
This PXD project contains two projects published on ProteomicsDB (https://www.proteomicsDB.org) as integral part of the publication. The first project entitled 'human body map' (https://www.proteomicsdb.org/#projects/42) involves the analysis of 36 different human tissues and body fluids. The second...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-02-23 | MSV000079526 | MassIVE
ProteomicsProteomeTools
The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the generation and multimodal LC-MS/MS analysis of >350,000 synthetic tryptic peptides representing nearly all canonical human gene produ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-02-10 | MSV000080544 | MassIVE
ProteomicsHs_Adrenal_gland
Human Adrenal Gland
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe005096 | PeptideAtlas
ProteomicsHs_Esophagus
Human Esophagus
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe004848 | PeptideAtlas
ProteomicsHs_Placenta_TMT6_Cellzome_1
Human Placenta, TMT6plex, Cellzome sample 1
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe005074 | PeptideAtlas
ProteomicsHs_Liver_chymotrypsin
Hs_Liver_chymotrypsin
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe004830 | PeptideAtlas
ProteomicsHs_Liver_LysC
Hs_Liver_LysC
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe004829 | PeptideAtlas
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